#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on October 06, 2026; 13:37 GMT TreeBASE (cc) 1994-2008 Study reference: Begerow D., Dreyer L., Roets F., & Wingfield M.J. 2008. Thecaphora capensis sp. nov., an unusual new anther smut on Oxalis in South Africa. Persoonia, 21. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2193] [ The following blocks are input data for analysis step 4577 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4577; DIMENSIONS NTAX=32; TAXLABELS Doassansiopsis_deforman_AF009849 Sporisorium_sorghi_AF009872 Thecaphora_affinis_EF647747 Thecaphora_alsinearum_EF200057 Thecaphora_alsinearum_EF200058 Thecaphora_amaranthi_AF009873 Thecaphora_amaranthi_EF200038 Thecaphora_capensis_1 Thecaphora_capensis_2 Thecaphora_capensis_3 Thecaphora_capensis_4 Thecaphora_haumanii_EF647749 Thecaphora_hedysari_EF647750 Thecaphora_hennenea_EF200039 Thecaphora_italica_EF200050 Thecaphora_italica_EF200051 Thecaphora_lathyri_EF647748 Thecaphora_leptideum_EF647745 Thecaphora_melandrii_EF200048 Thecaphora_melandrii_EF200049 Thecaphora_oxalidis_EF647746 Thecaphora_polymniae_EF647751 Thecaphora_saponariae_EF200041 Thecaphora_saponariae_EF200042 Thecaphora_schwarzmania_EF647752 Thecaphora_seminis_conv_AF009874 Thecaphora_solani_AY344049 Thecaphora_solani_AY344054 Thecaphora_spilanthis_DQ832241 Thecaphora_spilanthis_EF647753 Thecaphora_thlaspeos_EF647754 Urocystis_colchici_DQ838576 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3363] TITLE Thecaphora_LSU; LINK TAXA = TaxaForAnalysisStep4577; DIMENSIONS NCHAR=1034; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Doassansiopsis_deforman_AF009849 ----------------------------------------CCCTAGTAACGGCGAGTGAAGAGGGAA-GAGCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAATCTCGAGAAGTGTTT?CCGCGCTGGACC-AGGTAC---AAGTCCCTTGGAATAGGGCATCATAGAGGGTGAAAATCCCGTACTTGACTTGGAACCACCAGGGTTTTGTGATACACTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATCGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAA-AGTACGTGAAATTGCCGGAAGGGAAGGGTAGGGAGTCAGACA-TGCTGCTATTA--ATTCAGCCGTACCTTT--GGGTTAGGTGTAT-TTTAGTAGTGGCAGGCCA{GT}CATCGGTTTGTGCCGCTGGATATAGGTTTGAGGAATGTGGCTTATGCTTCGGTATAA-GTGTT-ATAGCCTCTTACTGAGTACAGCGGCGTGGACCGAGGAACGCAGCGCACCCGCA--AGGGCGGGCCTTCGGGCACCTT-TGCGCTTAGGATGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sporisorium_sorghi_AF009872 -----TCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAA-GAGCCCAAGATTGAAAGCTGGCGTCT-----TCGG-CGTCCGCATTGTAATCTCAAGAAGTGTTTTCCGCTTCGGACC-ATGCCT---AAGTCCCTTGGAAAAGGGCATCATAGAGGGTGATAATCCCGTACATGGCATGGAGCGCCCGAAGCTTTGTGATACGCTTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAACAGTACGTGAAATTGCCAAAAGGGAAGGGTAGGAGGTCAGAGA-TGCGTCTTGGG--ATTCAGCCTTGCTTTT--TCGCTTGGTGTTT-TTCCCAAGTTGCAGGCCAACGTCGGTTTTGGGCACTGGAGAAGGGTGGGAGGAACGTGGC--ACCTCTCGGGGT---GTGTT-ATAGCCTCCTACTGGATACAGCGACCGAGACCGAGGACAGCAGCGTACTCGCA--AGAGCGGGCCTTCGGGCACCTT-TACGCTTAGGGCGTTGGCATAATGGCCCTCTACCACCCGTCTTGAAACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_affinis_EF647747 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAA-AGCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGCATTATCCGCGCCGGACC-GAGCTTT--AAATCCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGTTCGGAACCCCCGGGGCTTTGTGATTTGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGAAGTCAGATA---TGCCTTTGCGGATTCAGCTTGACCTTTCGAGGTTGTGTGTATTTCCGTC-TCGGCAGGCCAACATCGATTTTGGCTGTCGGATATGAGTGGAAGGAATGTGGCACTCTCTTCGGAC-GGTGTGTT-ATAGCCTTTTCTTTGGTACGGCGGCTGGGATCGAG-AACGCAGTGCACCCTTGT--GGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTCTCTGCCACCCGTCTTGAAACACGGACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_alsinearum_EF200057 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAA-AGCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGCGTTATCCGCGCCGGACC-AGACTTTTTAAGTCCATTGGAATATGGTACCATAGAGGGTGATAGTCCCTTTCATGGTCTGGAACCCCCGGAGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGACAGGGAGTCAGTTA-TGGACCTTGCGG-ATTCAGCTTGACCTTTCGAGGTTGGGTCTATGTCTGCTTGGACCAGGCCAGCATCGATTTTGGCTGCCGGATATTAGTAGGGGGAACGTAGCATTTTCTTCGGAACAATGTGTTTATAGACCTTTGCTTGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCTTC--GGGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTCTCTATCACCCGTCTTGAAACACGGACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_alsinearum_EF200058 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAA-AGCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGCGTTATCCGCGCCGGACC-AGACTTTTTAAGTCCATTGGAATATGGTACCATAGAGGGTGATAGTCCCTTTCATGGTCTGGAACCCCCGGAGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGACAGGGAGTCAGTTA-TGGACCTTGCGG-ATTCAGCTTGACCTTTCGAGGTTGGGTCTATGTCTGCTTGGACCAGGCCAGCATCGATTTTGGCTGCCGGATATTAGTAGGGGGAACGTAGCATTTTCTTCGGAACAATGTGTTTATAGACCTTTGCTTGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCTTC--GGGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTCTCTATCACCCGTCTTGAAACACGGACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_amaranthi_AF009873 -------------------------------------TTCCCTTAGTAACGGCGAGTGAAGAGGGAAT-AGCCCAAGTTTGAAAGCTGGCGCCT-----TCGG-CGTCCGCATTGTAAACTCGAGAAGCATTATCCGCGTCGGACC-TGGCTC---AAATCCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGTCAGGA-CGCCCGAGGCTTTGTGATGTGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGAAGTCAGATA---TGCCTCTGCGGATTCAGCTTGACCTTTCGAGGTTGGGTGTATTTCCGTT-TGGGCAGGCCAGCATCGATTTTGGCTGCCGGATATTGGTAGAAGGAATGTGGCATCCTCTTCGGAG-GGTGTGTT-ATAGCCTTCTACTGGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCATT--AGGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGCTGGCTTAATGGCTCTCTGCCACCCGTCTTGAAACCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_amaranthi_EF200038 -------------------------------------TTCCCTTAGTAACGGCGAGTGAAGAGGGAAT-AGCCCAAGTTTGAAAGCTGGCGCCT-----TCGG-CGTCCGCATTGTAAACTCGAGAAGCATTATCCGCGTCGGACC-TGGCTC---AAATCCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGTCAGGA-CGCCCGAGGCTTTGTGATGTGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGAAGTCAGATA---TGCCTCTGCGGATTCAGCTTGACCTTTCGAGGTTGGGTGTATTTCCGTT-TGGGCAGGCCAGCATCGATTTTGGCTGCCGGATATTGGTAGAAGGAATGTGGCATCCTCTTCGGAG-GGTGTGTT-ATAGCCTTCTACTGGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCATT--AGGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGCTGGCTTAATGGCTCTCTGCCACCCGTCTTGAAACCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_capensis_1 ---------------------------------------------------------------------------------------------------------------ATTG-GGGCTCGAGAAGCGTTATCCGCGCCGGACC-AGGCTTT--AAATCCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGTCTGGAACCACCGGGGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGAAGTCAGATA---TGTCTTGGTGGATTCAGCTTGACCTTTCGAGGTTGGGTGTATTTCCGTCATGGACAGGCCAGCATCGATTTTGGCTGCCGGATATTGGTAAGGGGAATGTGGCATCCTTTTCGGAG-GGTGTGTT-ATAGCCTCTTACTTGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCGTA--AGGGCGGGCCTTAGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTTTCTGCCACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGTCTTTGGGTGTGAAAACCCATGGGCGAAATGAAAGTGACCTTTAAGGTGGGACTCT--CCGGATGCACCATCGACCGATCTCGATTTTTT-ATAATGACGGATTTGAGTAAGAGCATATATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAGAAACTCGTTACTCAGTTTTATGAGGTAAAGCGAATGA Thecaphora_capensis_2 ---------------------------------------------------------------------------------------------------------------ATTG-GGGCTCGAGAAGCGTTATCCGCGCCGGACC-AGGCTTT--AAATCCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGTCTGGAACCACCGGGGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGAAGTCAGATA---TGTCTTGGTGGATTCAGCTTGACCTTTCGAGGTTGGGTGTATTTCCGTCATGGACAGGCCAGCATCGATTTTGGCTGCCGGATATTGGTAAGGGGAATGTGGCATCCTTTTCGGAG-GGTGTGTT-ATAGCCTCTTACTTGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCGTA--AGGGCGGGCCTTAGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTTTCTGCCACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGTCTTTGGGTGTGAAAACCCATGGGCGAAATGAAAGTGACCTTTAAGGTGGGACTCT--CCGGATGCACCATCGACCGATCTCGATTTTTT-ATAATGACGGATTTGAGTAAGAGCATATATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAGAAACTCGTTACTCAGTTTTATGAGGTAAAGCGAATGA Thecaphora_capensis_3 ---------------------------------------------------------------------------------------------------------------ATTG-GGGCTCGAGAAGCGTTATCCGCGCCGGACC-AGGCTTT--AAATCCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGTCTGGAACCACCGGGGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGAAGTCAGATA---TGTCTTGGTGGATTCAGCTTGACCTTTCGAGGTTGGGTGTATTTCCGTCATGGACAGGCCAGCATCGATTTTGGCTGCCGGATATTGGTAAGGGGAATGTGGCATCCTTTTCGGAG-GGTGTGTT-ATAGCCTCTTACTTGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCGTA--AGGGCGGGCCTTAGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTTTCTGCCACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGTCTTTGGGTGTGAAAACCCATGGGCGAAATGAAAGTGACCTTTAAGGTGGGACTCT--CCGGATGCACCATCGACCGATCTCGATTTTTT-ATAATGACGGATTTGAGTAAGAGCATATATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAGAAACTCGTTACTCAGTTTTATGAGGTAAAGCGAATGA Thecaphora_capensis_4 ---------------------------------------------------------------------------------------------------------------ATTG-GGGCTCGAGAAGCGTTATCCGCGCCGGACC-AGGCTTT--AAATCCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGTCTGGAACCACCGGGGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGAAGTCAGATA---TGTCTTGGTGGATTCAGCTTGACCTTTCGAGGTTGGGTGTATTTCCGTCATGGACAGGCCAGCATCGATTTTGGCTGCCGGATATTGGTAAGGGGAATGTGGCATCCTTTTCGGAG-GGTGTGTT-ATAGCCTCTTACTTGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCGTA--AGGGCGGGCCTTAGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTTTCTGCCACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGTCTTTGGGTGTGAAAACCCATGGGCGAAATGAAAGTGACCTTTAAGGTGGGACTCT--CCGGATGCACCATCGACCGATCTCGATTTTTT-ATAATGACGGATTTGAGTAAGAGCATATATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAGAAACTCGTTACTCAGTTTTATGAGGTAAAGCGAATGA Thecaphora_haumanii_EF647749 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAA-AGCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGCGTTATCCGCGCCGGACC-AGGCCTT--AAGTCCATTGGAATATGGCACCATAGAGGGTGATAGTCCCTTTCATGGTCTGGAACCCCCGGAGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGACAGGGAGTCAGTTA-TGGACTTTGCGG-ATTCAGCTTGACCTTTCGAGGTTGGGTTTATTTCTGCTTGGACCAGGCCAGCATCGATTTTGGCTGTCGGAGATGAGTAGGGGGAACGTAGCATTTTCTTCGGAACAATGTGTTTATAGACCTTTACTTGGTACGACGGCTGGGATCGAGGAACGCAGTGCACCCTTC--GGGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTCTCTGCCACCCGTCTTGAAACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_hedysari_EF647750 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAA-AGCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGCGTTATCCGCGCCGGACC-AGGCCTT--AAGTCCATTGGAATATGGCACCATAGAGGGTGATAGTCCCTTTCATGGTCTGGAACCCCCGGAGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGACAGGGAGTCAGTTA-TGGACTTTGCGG-ATTCAGCTTGACCTTTCGAGGTTGGGTTTATTTCTGCTTGGACCAGGCCAGCATCGATTTTGGCTGTCGGAGATGAGTAGGGGGAACGTAGCATTTTCTTCGGAACAATGTGTTTATAGACCTTTACTTGGTACGACGGCTGGGATCGAGGAACGCAGTGCACCCTTC--GGGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTCTCTATCACCCGTCTTGAAACACGGACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_hennenea_EF200039 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAA-AGCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGTGTTATCCGCGCCGGACC-AGACTTT--AAATCCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGTCTGGAACCCCCGGGGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATAAAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGAAGTCAGATA---TGTCTTGATTGATTCAACTTGGCCTTTCGAGGTTGGGTGTATTTCGATTACGGACAGGCCAGCATCGATTTTAGCTGCCGGATATTGGTAGAAGGAATGTGGCATCTTTTTCGGAA-GGTGTGTT-ATAGCCTTTTACTTGGTACGGCGGCCGGGATCGAGGAACGCAGTGCACCCTTTT--GGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTTTCTGCCACCCGTCTTGAAACACGGACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_italica_EF200050 -------AATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAAGAGCCCAAGTTTGAAAGCTGGCACCT-----TGGGGTGTCCGCATTGTAAACTCGAGAAGTGTTATCCGCGCCGGACC-AGGCTTTTTAAGTCCATTGGAATATGGCACCATAGAGGGTGATAGTCCCTTTCATGGTCTGGAACCCCCGGGGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGTCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGACAGGGAGTCAGACA-TGGACCTTGCGG-ATTCAGCCTGACCTTTCGAGGTTGGGTGTATTTCCGCTTGGACCAGGCCAGCATCGATTTTGGCTGCCGGATATGGGTGAGGGGAACGTGGCATTTGTTTCGGCA-AATGTGTT-ATAGCCCTTGACTTGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCTTC--GGGGCAGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_italica_EF200051 -------AATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAAGAGCCCAAGTTTGAAAGCTGGCACCT-----TGGGGTGTCCGCATTGTAAACTCGAGAAGTGTTATCCGCGCCGGACC-AGGCTTTTTAAGTCCATTGGAATATGGCACCATAGAGGGTGATAGTCCCTTTCATGGTCTGGAACCCCCGGGGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGTCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGACAGGGAGTCAGACA-TGGACCTTGCGG-ATTCAGCCTGACCTTTCGAGGTTGGGTGTATTTCCGCTTGGACCAGGCCAGCATCGATTTTGGCTGCCGGATATGGGTGAGGGGAACGTGGCATTTGTTTCGGCA-AATGTGTT-ATAGCCCTTGACTTGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCTTC--GGGGCAGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_lathyri_EF647748 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAA-AGCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGCATTATCCGCGCCGGACC-GAGCTTT--AAATTCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGTTCGGAACCCCCGGGGCTTTGTGATTTGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGAAGTCAGATA---TGCCTTTGCGGATTCAGCTTGACCTTTCGAGGTTGTGTGTATTTCCGTC-TTGGCAGGCCAACATCGATTTTGGCTGTCGGATATGAATGGAAGGAATGTGGCACTCTCTTCGGAG-GGTGTGTT-ATAGCCTTTTATCTGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCTTTT--GGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTCTCTGCCACCCGTCTTGAAACACGGACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_leptideum_EF647745 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAA-GAGCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGCATTATCCGCGCCGGACC-TAGCTTT--AAATCCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGTTAGGAGCCACCGGGGCTTTGTGATTTGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGAAGTCAGATA---TGCCTCTGCAAATTCAGCTTGACCTTTCGAGGTTGGGTGTATTTTTGCT-TGGGCAGGCCAACATCGATTTTGGCTGCCGGATATGAGTGGAAGGAATGTGGCATCCTTTTCGGAG-GGTGTGTT-ATAGCCTTCTACTAGGTACGGCGGCTGGGATCGAGGACTGCAGTGCACCCTTC--GGGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTCTCTGCCACCCGTCTTGAAACACGGACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_melandrii_EF200048 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAA-AGCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGCGTTATCCGCGCCGGACC-AGATTTTTTAAGTCCATTGGAATATGGTACCATAGAGGGTGATAGTCCCTTTCATGGTCTGGAACCCCCGGAGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGACAGGGAGTCAGTTAATGGACCTTGCGGGATTCAGCTTGACCTTTCGAGGTTGGGTCTATGTCTGCTTGGACCAGGCCAGCATCGATTTTGGCTGCCAGATATTAGTAGGGGGAACGTAGCATTTTCTTCGGAACAATGTGTTTATAGACCTTTGCTTGGTATGGCGGCTGGGATCGAGGAACGCAGTGCACCCTTC--GGGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTCTCTATCACCCGTCTTGAAACACGGACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_melandrii_EF200049 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAA-AGCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGCGTTATCCGCGCCGGACC-AGATTTTTTAAGTCCATTGGAATATGGTACCATAGAGGGTGATAGTCCCTTTCATGGTCTGGAACCCCCGGAGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGACAGGGAGTCAGTTAATGGACCTTGCGGGATTCAGCTTGACCTTTCGAGGTTGGGTCTATGTCTGCTTGGACCAGGCCAGCATCGATTTTGGCTGCCAGATATTAGTAGGGGGAACGTAGCATTTTCTTCGGAACAATGTGTTTATAGACCTTTGCTTGGTATGGCGGCTGGGATCGAGGAACGCAGTGCACCCTTC--GGGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTCTCTATCACCCGTCTTGAAACACGGACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_oxalidis_EF647746 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAC-AGCCCAAGTTTGAAAGCTGGCACCT-----TTGG-TGTCCGCATTGTAAACTCGAGAAGTGTTATCCGTGCCGGACC-AGGCTTT--AAATCCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGTCTGGAACCACCGGGGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGAAGTCAGATA---TGTCTTGGCGGATTCAGCTTGACCTTTTGAGGTTGGGTGTATTTCTGTCATGGACAGGCCAGCATCAATTTTGGCTGCTGGATATTGGTGAGGGGAATGTGGCATCCTTTTCGGAG-GGTGTGTT-ATAGCCTATTACTTGGTACAGCGGCTGGGATTGAGGAACGCAGTGCACCCATA--AGGGCGGGCCTTAGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTTTCTGCCACCCGTCTTGAAACACGGACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_polymniae_EF647751 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAA-AGCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGCGTTATCCGCGCCGGACC-AGGCCTT--AAGTCCATTGGAATATGGCACCATAGAGGGTGATAGTCCCTTTCATGGTCTGGAACCCCCGGAGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGACAGGGAGTCAGTTA-TGGACTTTGCGG-ATTCAGCTTGACCTTTCGAGGTTGGGTTTATTTCTGCTTGGACCAGGCCAGCATCGATTTTGGCTGTCGGAGATGAGTAGGGGGAACGTAGCATTTTCTTCGGAACAATGTGTTTATAGACCTTTACTTGGTACGACGGCTGGGATCGAGGAACGCAGTGCACCCTTC--GGGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTCTCTATCACCCGTCTTGAAACACGGACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_saponariae_EF200041 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAA-AGCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGCGTTATCCGCGCCGGACCCAGACTTT--AAGTCCATTGGAATATGGCACCATAGAGGGTGATAGTCCCTTTCATGGTCTGGAACCCCCGGAGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGACAGGGAGTCAGTTA-TGGACCTTGCGG-ATTCAGCTTGACCTTTCGAGGTTGGGTCTATGTCTGCTTGGACCAGGCCAGCATCGATTTTGGCTGCCGGATATTAGTAGGGGGAACGTAGCATTTTCTTCGGAACAATGTGTTTATAGACCTTTGCTTGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCTTC--GGGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTCTCTATCACCCGTCTTGAAACACGGACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_saponariae_EF200042 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAA-AGCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGCGTTATCCGCGCCGGACCCAGACTTT--AAGTCCATTGGAATATGGCACCATAGAGGGTGATAGTCCCTTTCATGGTCTGGAACCCCCGGAGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGACAGGGAGTCAGTTA-TGGACCTTGCGG-ATTCAGCTTGACCTTTCGAGGTTGGGTCTATGTCTGCTTGGACCAGGCCAGCATCGATTTTGGCTGCCGGATATTAGTAGGGGGAACGTAGCATTTTCTTCGGAACAATGTGTTTATAGACCTTTGCTTGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCTTC--GGGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTCTCTATCACCCGTCTTGAAACACGGACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_schwarzmania_EF647752 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAA-AGCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGCATTATCCGCGCCGGACC-AAGCTTT--AAATCCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGTTTGGAACCCCCGGGGCTTTGTGATTTGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGTGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGAAGTCAGATA---TGCCTTTGCGGATTCAGCTTGACCTTTCGAGGTTGTGTGTATTTCCGTT-TGGGCAGGCCAACATCGATTTTGGCTGTCGGATATGAATGGAAGGAATGTGGCACTCTCTTCGGAG-GGTGTGTT-ATAGCCTTTTATTTGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCTTTT-AGGGCGGGCCTTTGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTCTCTGCCACCCGTCTTGAAACACGGACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_seminis_conv_AF009874 -----------------------------------------------AACGGCGAGTGAAGAGGGAAAG-GCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGCATTATCCGCGCCGGACC-GAGCTTT--AAATCCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGT?CGGGGCCCCCGGGGCTTTGTGATTTGCTCTCCAA?AGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATA?CGAAC?AGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTTCGTGAAATTGCCGGAAGGGAAGGGTAGGAAGTCAGATA---TGCCTTTGCGGATTCAGCTTGACCTTTCGAGGTTGTGTGTATTTCCGTC-TTGGCAGGCCAACATCGATTTTGGCTGTCGGATATGAATGGAAGGAATGTGGCACTCTCTTCGGAG-GGTGTGTT-ATAGCCTTTTATTTGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCTTTT--GGGCGGGCCTTCGGGCACCTTATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_solani_AY344049 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGA-TGAGCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGCGTTATCCGCGCCGGACC-AGACTTT--AAATCCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGTCTGGAACCCCCGGGGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGGAGTCAGATA---TGTCTTAGTTGATTCAGCTTGACCTTTCGAGGTTGGGTGTATTTCGGCTATGGACAGGCCAGCATCGATTTTGGCTGCCGGATATGGGTAAAGGGAATGTGGCATCTTCTTCGGAA-GATGTGTT-ATAGCCCTTTACTTGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCTTC--GGGGCGGGCCTTTGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTCTCTGCCACCCGTCTTGAAACACGGACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_solani_AY344054 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGA-TGAGCCCAAGTTTGAAAGCTGGCACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGCGTTATCCGCGCCGGACC-AGACTTT--AAATCCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGTCTGGAACCCCCGGGGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGGAGTCAGATA---TGTCTTAGTTGATTCAGCTTGACCTTTCGAGGTTGGGTGTATTTCGGCTATGGACAGGCCAGCATCGATTTTGGCTGCCGGATATGGGTAAAGGGAATGTGGCATCTTCTTCGGAA-GATGTGTT-ATAGCCCTTTACTTGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCTTC--GGGGCGGGCCTTTGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTCTCTGCCACCCGTCTTGAAACACGGACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_spilanthis_DQ832241 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAA-AGCCCAAGTTTGAAAGCTGACACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGTGTTATCCGCGCCGGACC-AGACTTT--AAATCCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGTCTGGAACCCCCGGGGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGAAGTCAGATA---TGTCTTAATTGATTCAACTTGGCCTTTCGAGGTTGGGTGTATTTCAATTACGGACAGGCCAGCATCGATTTTAGCTGCCGGATATTGGTAG{AG}AGGAATGTGGCATCTTTTTCGGAA-GGTGTGTT-ATAGCCTTTTACTTGGTACGGCGGCCGGGATCGAGGAACGCAGTGCACCCTTTT--GGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTTTCTGCCACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGTCTTTGGGTGTGAAAACCCATAGGCGAAATGAAAGTGACCTTTAAGGTGGGACTCT--TCGGATGCACCATCGACCGATCTTGAATTTTT-ATAATGACGGATTTGAGTAAGAGCATATATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGTCAGGGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAGAAACTCGTTACTCAGTTTTATGAGGTAAAGCGAATGA Thecaphora_spilanthis_EF647753 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAA-AGCCCAAGTTTGAAAGCTGACACCT-----TCGG-TGTCCGCATTGTAAACTCGAGAAGTGTTATCCGCGCCGGACC-AGACTTT--AAATCCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGTCTGGAACCCCCGGGGCTTTGTGATGCGCTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATAGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGAAGTCAGATA---TGTCTTAATTGATTCAACTTGGCCTTTCGAGGTTGGGTGTATTTCAATTACGGACAGGCCAGCATCGATTTTAGCTGCCGGATATTGGTAGAAGGAATGTGGCATCTTTTTCGGAA-GGTGTGTT-ATAGCCTTTTACTTGGTACGGCGGCCGGGATCGAGGAACGCAGTGCACCCTTTT--GGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTTTCTGCCACCCGTCTTGAAACACGGACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Thecaphora_thlaspeos_EF647754 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAA-AGCCCAAGTTTGAAAGCTGGCACCT-----TTGG-TGTCCGCATTGTAAACTCGAGAAGCATTATCCGCGCCGGACC-AAGCTTT--AAATCCTTTGGAATAAGGTACCTTAGAGGGTGATAGTCCCTTTCATAGTTTGGAACCCCCGGGGCTTTGTGATTTGCTCTCCAGGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATTGAGGAGAGACCGATAGCGAACAAGTACCGTGAGG-AAAGATGAAA-GAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGAAGTCAGACA---TGCCTTTGCGGATTCAGCTTGACCTTTTGAGGTTGTGTGTATTTCCGTT-TGGGCAGGCCAACATCGATTTTGGCTGTCGGATAGGAATGGAAGGAATGTGGCACTCTTTTCGGAG-GGTGTGTT-ATAGCCTTCTATTTGGTACGGCGGCTGGGATCGAGGAACGCAGTGCACCCTTTTTTGGGCGGGCCTTCGGGCACCTT-TGCACATAGGATGTTGGCTTAATGGCTCTCTGCCACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGTCTTTGGGTGTGAAAACCCATGGGCGAAATGAAAGTGACCTTTAAGGTGGGACTCTTT--GGATGCACCATCGACCGATCTTGAATTTTT-ATAATGACGGATTTGAGTAAGAGCATATATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCATTAAGATACTTAGGTGGTTAAGAGGCAGCTAAAAGGGCATGTCTAGTGGGCGTTGAGGCCTGCGACACTATCAAATTGC Urocystis_colchici_DQ838576 GCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAA-GAGCCCAAGTTTGAAAGCTGGCGTTTGTATTCAGG-CGTCCGCATTGTAAACTCGAGAAGTGTTATCCGCGCCGGACC-AGGTTC---AAGTCCCTTGGAATAGGGCATCATAGAGGGTGAAAGTCCCGTGCTTGATCTGGAACC-CCGGGGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATCGAGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCCGGAAGGGAAGGGTAGGAAGTCAGACA-TGC-CTTTGCAG-ATTCAGCCTTGTCTTT--GGACTTGGTGCAT-TTTTGTAATGGCAGGCCAGCGTCGGTTTGTGTCGCCGGATATAGGTTTAGGGAATGTGGCTTTATCTTTGGGTAAA-GTGTT-ATAGCCCTTTACTGAGTACGGCGGTGTGGACCGAGGAACGCAGCGCACCCATT--AGGGCGGGCCTTCGGGCACCTT-TGCGCTTAGGATGCTGGCTTAATGGCTTTCTGCCACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCATGCGAGTCTTTGGGTGGCAAA-CCCATGGGCGAAATGAAAGTGAATTTTAAGGTGGGATCCCTTGCGGGTGCACCATCGGCCGACTTTGAACCTTTCATGGGGACGAGTTTGAGCAAGAGCATTTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCAT------------------------------------------------------------------------------ ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Thecaphora_LSU) = N: 1-1034; CODONPOSSET CodonPositions (CHARACTERS = Thecaphora_LSU) = N: 1-1034; END; [ The following blocks are output data for analysis step 4577 ] BEGIN TREES; TITLE Tb9349; LINK TAXA = TaxaForAnalysisStep4577; TREE Fig._2 = [&R] ((((Thecaphora_solani_AY344054,Thecaphora_solani_AY344049),(((Thecaphora_spilanthis_EF647753,Thecaphora_spilanthis_DQ832241),Thecaphora_hennenea_EF200039),((((((Thecaphora_seminis_conv_AF009874,Thecaphora_lathyri_EF647748,Thecaphora_affinis_EF647747),Thecaphora_schwarzmania_EF647752),Thecaphora_thlaspeos_EF647754),Thecaphora_leptideum_EF647745),(Thecaphora_amaranthi_EF200038,Thecaphora_amaranthi_AF009873)),(Thecaphora_oxalidis_EF647746,(Thecaphora_capensis_1,Thecaphora_capensis_2,Thecaphora_capensis_3,Thecaphora_capensis_4))))),(((((Thecaphora_melandrii_EF200048,Thecaphora_melandrii_EF200049),Thecaphora_alsinearum_EF200057,Thecaphora_alsinearum_EF200058),Thecaphora_saponariae_EF200041,Thecaphora_saponariae_EF200042),(Thecaphora_polymniae_EF647751,Thecaphora_haumanii_EF647749,Thecaphora_hedysari_EF647750)),(Thecaphora_italica_EF200050,Thecaphora_italica_EF200051))),((Urocystis_colchici_DQ838576,Doassansiopsis_deforman_AF009849),Sporisorium_sorghi_AF009872)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr378] END;