#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 20, 2024; 16:13 GMT TreeBASE (cc) 1994-2008 Study reference: Collevatti R., Colli G., Giugliano L., Werneck F., & Werneck F. 2008. Phylogeny, biogeography and evolution of clutch size in South American lizards of the genus Kentropyx (Squamata: Teiidae). Molecular Ecology, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2213] [ The following blocks are input data for analysis step 4640 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4640; DIMENSIONS NTAX=16; TAXLABELS Ameiva_ameiva Cnemidophorus_gramivagus Kentropyx_altamazonica_1 Kentropyx_altamazonica_2 Kentropyx_calcarata_1 Kentropyx_calcarata_2 Kentropyx_paulensis_1 Kentropyx_paulensis_2 Kentropyx_pelviceps Kentropyx_sp_1 Kentropyx_sp_2 Kentropyx_striata Kentropyx_vanzoi_1 Kentropyx_vanzoi_2 Kentropyx_viridistriga_1 Kentropyx_viridistriga_2 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3880] TITLE 16s; LINK TAXA = TaxaForAnalysisStep4640; DIMENSIONS NCHAR=446; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ameiva_ameiva AACGGCCGAGGGATCCTACACCGTGCAAAGGTAGCATAATCATTTGTCATCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACTTTCCTGTCTCTTGTAACCAATCAATGAAACTGATCTTTCAGTCCAAAAGCTGAAATATTTACACAAGACGAAAAGACCCTGTGGAAC-TTTAAGTGCTAATCAAC-ACATGACACAGACACTTTTAGTTGGGGCAACTTTGGAACAAAACAAAACTTCCAATACAAAGACCACCT-C-CGACAAACCAAGGC-CCACACGCCAATGTT-T--GCCT-CT-TATACTGATCCAGTATTACTGATCAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGCCCCCCAAACAGTGCAGCAGCTGT Cnemidophorus_gramivagus AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACTTTCCTGTCTCTTGTAACCAATCAATGAAACTGATCTCCCAGTCCAAAAGCTGGAATAAAGCCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGTTAGTCAACAACATGATA-AACCACTTTTAGTTGGGGCAACTTTGGAATAAAACAAAACTTCCAATAAAGGGTACAACT-CACCCTAAATCTAGAC-ACACACGCCAAAATT-TA-GACC-CA-GA-ATCGACCCAGTACCACTGACAAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAG-GGGGCTTACGACCTCGATGTTGGATCAGGGCACCCAAACAGTGCAGCAGCTGT Kentropyx_altamazonica_1 AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCTCCCAGTCCAAAAGCTGGGATAAAACCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGCTAGTCATT-ATATGATAGAAACACTTTTAGTTGGGGCAACTTTGGAACAAAGTAAAACTTCCAATTAAATTT-T-ATTATA-CCTTAATCTAGGTATTACACACCGACATT-AA-AA-TACT-C---TTGACCCAGTACTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCA-GGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_altamazonica_2 AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATTCCCCAGTCCAAAAGCTGGGATAAAACCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGCTAATCATT-ATATGATAAAGACACTTTTAGTTGGGGCAACTTTGGAACAAAGTAAAACTTCCAATTAAATTT-T-ATTACA-CCTTAATCTAGGCACTACACACCAACATTAAA-AA-TACC-C---TTGACCCAGTACTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGATGAGCGGGGCTTACGACCTCGATGTTGGATCA-GGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_calcarata_1 AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACCTTACTGTCTCTTGTAACCAATCAATGAAACTGATCTTCTAGTCCAAAAGCTAGAATAAAAACACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGTCAATCATC-ATATGATATAACCACTTTTAGTTGGGGCAACTTTGGAATAAAGAAAAACTTCCAATTATTTTTAT-CTT-T--CCCTAATCTAGGT-CCACATACCAAAATT-AATGA-TACT-T---CTGACCCAGTCCTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCA-GGCCCCCCAACAGTGCAGCAGCTGC Kentropyx_calcarata_2 AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAACGGCCCAATGAGGACCTTACTGTCTCTTGTAACCAATCAATGAAACTGATCTTCTAGTTCAAAAGCTAGAATAAAAACACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGTCAACCATC-ATATGATATAACCACTTTTAGTTGGGGCAACTTTGGAATAAAGAAAAACTTCCAATTAATCTTAT-CTT-T--CCCTAATCTAGGT-CTACATACCAACATT-AATGA-TACT-T---CTGACCCAGTCCTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAGCAGTGCAGCAGCTGC Kentropyx_paulensis_1 AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCATTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCCCCCAGTCCAAAAGCTGGGATAAAATCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ACATGATA-TAATACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAGTTAAATTTGT-C-T-GA-CCTTAATCTAGGT-TTACACACCAACATTAAA-AA-T-TA-C--ACTGACCCAGTCCTACTGACTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_paulensis_2 AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCATTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCCCCCAGTCCAAAAGCTGGGATAAAATCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ACATGATA-TAATACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAGTTAAATTTGT-C-T-GA-CCTTAATCTAGGT-TTACACACCAACATTAAA-AA-T-TA-C--ACTGACCCAGTCCTACTGACTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_pelviceps ?ACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTACTGTCTCTTATAACCAATCAATGAAACTGATCCTCCAGTCCAAAAGCTGGGATAAAGCCACAAGACGAAAAGACCCTGTGGAACTTTCAAGTACCAATCATT-ACATGAC-TAAGCACTTTTAGTTGGGGCAACTTCGGAATAAAGTAAAACTTCCAATTAAACTTAC-CCT-TA-CCTTAATCTAGGT-TTACACACCAACATT-CATAA-CATT-C---TCGACCCAGTATTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCA-GGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_sp_1 AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCATTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCCCCCAGTCCAAAAGCTGGGATAAAATCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ATATGATA-TAATACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATTAAATTTGT-C-T-AA-CCTTAATCTAGGT-TTACACACCAACATTAAA-AA-T-TA-C--ACTGACCCAGTCCTACTGACTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_sp_2 AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCATTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCCCCCAGTCCAAAAGCTGGGATAAAATCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ATATGATA-TAATACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATTAAATTTGT-C-T-AA-CCTTAATCTAGGT-TTACACACCAACATTAAA-AA-T-TA-C--ACTGACCCAGTCCTACTGACTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_striata AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACTTTACTGTCTCTTGTAATTGATCAATGAAACTGATCTCTCAGTCCAAAAGCTGAGATAAAACCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGTTAATCATC-GCATGACACAGCCACTTTTAGTTGGGGCAACTTTGGAACAAAACAAAACTTCCAATTAAATTTAT-CAT-TA-CCTTAATTTAGGT-CCACACACCAATATTTTA-AA-TAAT-T---TTGACCCAGTATTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCA-GGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_vanzoi_1 AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATTTCCCAGTTCAAAAGCTGGGATAAAACCACAAGACGAAAAGACCCTGTGGAACTTTTAAATGCCAGTCACC-ACATGAT-GAAACACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATT-CATTTAT-CTT-TA-CCTTAATCTAGGT-TTACACGCCGACATTAAATAG-TGCT-C---TTGACCCAGTCCTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTAAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_vanzoi_2 AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATTTCCCAGTTCAAAAGCTGGGATAAAACCACAAGACGAAAAGACCCTGTGGAACTTTTAAATGCCAGTCACC-ACATGAT-GAAACACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATT-CATTTAT-CTT-TA-CCTTAATCTAGGT-TTACACGCCGACATTAAATAA-TGCTCC---TTGACCCAGTCCTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTAAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_viridistriga_1 AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCTCCCAGTCCAAAAGCTGGAATAAAAACACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ACATGATATTAATGCTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATTAAATTTAC-C-T-TA-CCTTAATTTAGGC-TTACACGCCAACATTAAA-GA-TGTT-C---TTGACCCAGTCCTACTGATTAAAGAAATAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTAAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_viridistriga_2 AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCTCCCAGTCCAAAAGCTGGAATAAAAACACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ACATGATATTAATGCTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATTAAATTTAC-C-T-TA-CCTTAATTTAGGC-TTACACGCCAACATTAAA-GA-TGTT-C---TTGACCCAGTCCTACTGATTAAAGAAATAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTAAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 16s) = N: 1-446; CODONPOSSET CodonPositions (CHARACTERS = 16s) = N: 1-446; END; [ The following blocks are output data for analysis step 4640 ] BEGIN TREES; TITLE Tb9412; LINK TAXA = TaxaForAnalysisStep4640; TREE 16s_Bayesian = [&R] (Ameiva_ameiva,Cnemidophorus_gramivagus,(Kentropyx_striata,((Kentropyx_calcarata_1,Kentropyx_calcarata_2),(Kentropyx_pelviceps,((Kentropyx_altamazonica_1,Kentropyx_altamazonica_2),((Kentropyx_vanzoi_1,Kentropyx_vanzoi_2),((Kentropyx_viridistriga_1,Kentropyx_viridistriga_2),((Kentropyx_paulensis_1,Kentropyx_paulensis_2),(Kentropyx_sp_1,Kentropyx_sp_2))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5424] END;