#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 29, 2024; 6:24 GMT TreeBASE (cc) 1994-2008 Study reference: Collevatti R., Colli G., Giugliano L., Werneck F., & Werneck F. 2008. Phylogeny, biogeography and evolution of clutch size in South American lizards of the genus Kentropyx (Squamata: Teiidae). Molecular Ecology, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2213] [ The following blocks are input data for analysis step 4642 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4642; DIMENSIONS NTAX=16; TAXLABELS Ameiva_ameiva Cnemidophorus_gramivagus Kentropyx_altamazonica_1 Kentropyx_altamazonica_2 Kentropyx_calcarata_1 Kentropyx_calcarata_2 Kentropyx_paulensis_1 Kentropyx_paulensis_2 Kentropyx_pelviceps Kentropyx_sp_1 Kentropyx_sp_2 Kentropyx_striata Kentropyx_vanzoi_1 Kentropyx_vanzoi_2 Kentropyx_viridistriga_1 Kentropyx_viridistriga_2 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3606] TITLE 12s16s; LINK TAXA = TaxaForAnalysisStep4642; DIMENSIONS NCHAR=779; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ameiva_ameiva GTTTATCCGCCAGAGGATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAACCCTGCCTAGAGGAGCCTGTTTCATAATCGATAACCCCCGTTCAACCCAACCTTCCCTCG-AA--CATC--CCAGCCTATATACCGCCGTCTTACT--TCTAGCTTACCTTCTGAAAGAAACAC-AGTAAGCACAATAG-TC-CC-AACTGAAAAGTCAGGTCAAGGTGTAGCTTATGGGAAGGAGAAAATGGGCTACATTTTCTGT-CACAGAACACCCACGGAAAATATTCTGAAA-TAAAATAT-ATAAAGGCGGATTTAGCAGTAAGAACGGCCGAGGGATCCTACACCGTGCAAAGGTAGCATAATCATTTGTCATCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACTTTCCTGTCTCTTGTAACCAATCAATGAAACTGATCTTTCAGTCCAAAAGCTGAAATATTTACACAAGACGAAAAGACCCTGTGGAAC-TTTAAGTGCTAATCAAC-ACATGACACAGACACTTTTAGTTGGGGCAACTTTGGAACAAAACAAAACTTCCAATACAAAGACCACCT-C-CGACAAACCAAGGC-CCACACGCCAATGTT-T--GCCT-CT-TATACTGATCCAGTATTACTGATCAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGCCCCCCAAACAGTGCAGCAGCTGT Cnemidophorus_gramivagus ACTCGTCCGCCAGAAAATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATCCTGCCTAGAGGAGCCTGTTTCATAATCGATAACCCCCGTTCAACCCGACCTTTCCTTGAAA--TATT--TCAGCCTATATACCGCCGTCCT-TT--TC-CGCCTACCTTCTGAAAGACCTAC-AGTAGGCCTAATAGTTCACC-AACTAAAAAGTCAGGTCAAGGTGTAGCTTATGGAAAGGAGAAAATGGGCTACATTTTCTAC-TATAGAACA-CCACGAAATACTTTCTGAAA-T-AAATGT-ATGAAGGAGGATTTAGTAGTAAGAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACTTTCCTGTCTCTTGTAACCAATCAATGAAACTGATCTCCCAGTCCAAAAGCTGGAATAAAGCCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGTTAGTCAACAACATGATA-AACCACTTTTAGTTGGGGCAACTTTGGAATAAAACAAAACTTCCAATAAAGGGTACAACT-CACCCTAAATCTAGAC-ACACACGCCAAAATT-TA-GACC-CA-GA-ATCGACCCAGTACCACTGACAAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAG-GGGGCTTACGACCTCGATGTTGGATCAGGGCACCCAAACAGTGCAGCAGCTGT Kentropyx_altamazonica_1 ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATCCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCCAACCTTCCCTTGAAA-TTTATTTTCAGCCTATATACCGCCGTCCT--T-TAC-CGCTTACCTTCTGAAAGAAATACTAGTAAGCCTAATAG-CCCCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCCTATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGAACA--CACGAAATATACTCTGAAATCAAAGTAA-CTGAAGGCGGATTTAGTAGTAAGAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCTCCCAGTCCAAAAGCTGGGATAAAACCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGCTAGTCATT-ATATGATAGAAACACTTTTAGTTGGGGCAACTTTGGAACAAAGTAAAACTTCCAATTAAATTT-T-ATTATA-CCTTAATCTAGGTATTACACACCGACATT-AA-AA-TACT-C---TTGACCCAGTACTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCA-GGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_altamazonica_2 ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAATTCAAAAGACTTGACGGTGTCCCAATCCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGCTTAACCCAACCTTCCCTTGAAA--CCATTTTCAGCCTATATACCGCCGTCCT--T-TAC-CGCTTACCTTCTGAAAGTCACACTAGTAAGCCTAATAG-CCATT-AGCTAGAAAGTCAGGTCAAGGTGTAGCCCATGGGTAGGAGAAAGTGGGCTACATTTTCTACTTCTAGAACA--CACGAAACATACTCTGAAATCAAAGTAA-CCGAAGGCGGATTTAGTAGTAAGAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATTCCCCAGTCCAAAAGCTGGGATAAAACCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGCTAATCATT-ATATGATAAAGACACTTTTAGTTGGGGCAACTTTGGAACAAAGTAAAACTTCCAATTAAATTT-T-ATTACA-CCTTAATCTAGGCACTACACACCAACATTAAA-AA-TACC-C---TTGACCCAGTACTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGATGAGCGGGGCTTACGACCTCGATGTTGGATCA-GGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_calcarata_1 ACTTGTCCGCCAGAAAATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACAGTGT-CCTAT-CTGCCTAGAGGAGCCTGCTTCATAATCGATAAACCCCGTTCAACCCAACCCTCCCTCGAAA-TCCACTTTCAGCCTATATACCGCCGTCCT--TCTTG-CGCTTACCTTCTGAAAGATCTATTAGTAAGCCCAATAG-CCCTTAAGCTAAAAAGTCAGGTCAAGGTGTAGCCCATGGGAGGGAGAAAGTGGGCTACATTTTCTACCT-TAGAACA--CACGAAATATATTCTGAAACCAAAGTAATATGAAGGTGGATTTAGTAGTAAGAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACCTTACTGTCTCTTGTAACCAATCAATGAAACTGATCTTCTAGTCCAAAAGCTAGAATAAAAACACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGTCAATCATC-ATATGATATAACCACTTTTAGTTGGGGCAACTTTGGAATAAAGAAAAACTTCCAATTATTTTTAT-CTT-T--CCCTAATCTAGGT-CCACATACCAAAATT-AATGA-TACT-T---CTGACCCAGTCCTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCA-GGCCCCCCAACAGTGCAGCAGCTGC Kentropyx_calcarata_2 ACTTGTCCGCCAGAAAATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACAGTGT-CCTAT-CTGCCTAGAGGAGCCTGCTTCATAATCGATAAACCCCGCTCAACCCGACCCTCCCTCGAAA-CCCACTTTCAGCCTATATACCGCCGTCCT--TCTAG-CGCTTACCTTCTGAAAGATCTATCAGTAAGCCCAATAG-CCCTTAAGCTAAAAAGTCAGGTCAAGGTGTAGCCCATGGGAGGGAGAAAGTGGGCTACATTTTCTACCT-TAGAACA--CACGAAATATACTCTGAAACCAAAGTAATATGAAGGTGGATTTAGTAGTAAAAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAACGGCCCAATGAGGACCTTACTGTCTCTTGTAACCAATCAATGAAACTGATCTTCTAGTTCAAAAGCTAGAATAAAAACACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGTCAACCATC-ATATGATATAACCACTTTTAGTTGGGGCAACTTTGGAATAAAGAAAAACTTCCAATTAATCTTAT-CTT-T--CCCTAATCTAGGT-CTACATACCAACATT-AATGA-TACT-T---CTGACCCAGTCCTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAGCAGTGCAGCAGCTGC Kentropyx_paulensis_1 ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATTCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCCGACCTTCCCTTGAAA-CCCAC-TTCAGCCTATATACCGCCGTCCT-TTATAC-CGCTTACCTTTTGAAAGATATACGAGTAAGCCAAATAG-CTTCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCTCATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGAACA--TACGAAATGTACTCTGAAATTAAAGTAA-ATGAAGGCGGATTTAGTAGTAAAAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCATTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCCCCCAGTCCAAAAGCTGGGATAAAATCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ACATGATA-TAATACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAGTTAAATTTGT-C-T-GA-CCTTAATCTAGGT-TTACACACCAACATTAAA-AA-T-TA-C--ACTGACCCAGTCCTACTGACTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_paulensis_2 ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATTCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCCGACCTTCCCTTGAAA-CCCAC-TTCAGCCTATATACCGCCGTCCT-TTATAC-CGCTTACCTTTTGAAAGATATACGAGTAAGCCAAATAG-CTTCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCTCATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGAACA--TACGAAATGTACTCTGAAATTAAAGTAA-ATGAAGGCGGATTTAGTAGTAAAAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCATTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCCCCCAGTCCAAAAGCTGGGATAAAATCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ACATGATA-TAATACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAGTTAAATTTGT-C-T-GA-CCTTAATCTAGGT-TTACACACCAACATTAAA-AA-T-TA-C--ACTGACCCAGTCCTACTGACTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_pelviceps AATTGTTCGCCAGAAAATTACGGGTGAAAACCTAAAACTCAAAAGACTTGACGGTGTCCCAATCCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCTAACCTTCCCTTGAAA-CCTACTTTCAGCCTATATACCGCCGTCCT--T--AC-CGCTTACCTTCTGAAAGATGTACTAGTAAGCTCAACAG-CACTT-AACTAAAAAGTCAGGTCAAGGTGTAGCCCATGGGAAGGAGAAAGTGGGCTACATTTTCTACTT-CAGAATA--CACGAAATATACTCTGAAAT-AAAGTAA-ATGAAGGCGGATTTAGTAGTAAG?ACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTACTGTCTCTTATAACCAATCAATGAAACTGATCCTCCAGTCCAAAAGCTGGGATAAAGCCACAAGACGAAAAGACCCTGTGGAACTTTCAAGTACCAATCATT-ACATGAC-TAAGCACTTTTAGTTGGGGCAACTTCGGAATAAAGTAAAACTTCCAATTAAACTTAC-CCT-TA-CCTTAATCTAGGT-TTACACACCAACATT-CATAA-CATT-C---TCGACCCAGTATTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCA-GGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_sp_1 ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATTCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCCAACCTTCCCTTGAAA-CCTTC-TTCAGCCTATATACCGCCGTCCT-TTATAC-CGCTTACCTTTTGAAAGATATATGAGTAAGCCAAATAG-CCTCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCTCATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGATTA--TACGAAATGTACTCTGAAATTAAAGTAA-ATGAAGGCGGATTTAGTAGTAAAAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCATTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCCCCCAGTCCAAAAGCTGGGATAAAATCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ATATGATA-TAATACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATTAAATTTGT-C-T-AA-CCTTAATCTAGGT-TTACACACCAACATTAAA-AA-T-TA-C--ACTGACCCAGTCCTACTGACTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_sp_2 ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATTCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCCAACCTTCCCTTGAAA-CCTTC-TTCAGCCTATATACCGCCGTCCT-TTATAC-CGCTTACCTTTTGAAAGATATATGAGTAAGCCAAATAG-CCTCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCTCATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGATTA--TACGAAATGTACTCTGAAATTAAAGTAA-ATGAAGGCGGATTTAGTAGTAAAAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCATTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCCCCCAGTCCAAAAGCTGGGATAAAATCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ATATGATA-TAATACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATTAAATTTGT-C-T-AA-CCTTAATCTAGGT-TTACACACCAACATTAAA-AA-T-TA-C--ACTGACCCAGTCCTACTGACTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_striata ACTTGTTCGCCAGAAAATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATCCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCCTACCTCCCCTCGAAA--TC-C---CAGCCTATATACCGCCGTCAT-CT--AC-CGCTTACCTTCTGAAAGACATAC-AGTAAGCCTAATAG-CC-CT-AGCTAAAAAGTCAGGTCAAGGTGTAGCTAATGGGAAGGAGAAAGTGGGCTACATTTTCTAC-TCAAGAACA--CACGAAACTTATCCTGAAA-TAAGGTAA-ATGAAGGCGGATTTAGTAGTAAGAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACTTTACTGTCTCTTGTAATTGATCAATGAAACTGATCTCTCAGTCCAAAAGCTGAGATAAAACCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGTTAATCATC-GCATGACACAGCCACTTTTAGTTGGGGCAACTTTGGAACAAAACAAAACTTCCAATTAAATTTAT-CAT-TA-CCTTAATTTAGGT-CCACACACCAATATTTTA-AA-TAAT-T---TTGACCCAGTATTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCA-GGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_vanzoi_1 ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATCCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCCGACCTTCCCTTGAAA--T-TT-TACAGCCTATATACCGCCGTCCT-CT-TGC-CGCTTACCTTCTGAAAGACATATGAGTAAGCCAAATAGCCCTCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCCTATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGAATA--TACGAAATATGCTCTGAAATCAAAGTAA-ATGAAGGCGGATTTAGTAGTAAAAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATTTCCCAGTTCAAAAGCTGGGATAAAACCACAAGACGAAAAGACCCTGTGGAACTTTTAAATGCCAGTCACC-ACATGAT-GAAACACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATT-CATTTAT-CTT-TA-CCTTAATCTAGGT-TTACACGCCGACATTAAATAG-TGCT-C---TTGACCCAGTCCTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTAAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_vanzoi_2 ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATCCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCCGACCTTCCCTTGAAA--T-TT-TACAGCCTATATACCGCCGTCCT-CT-TGC-CGCTTACCTTCTGAAAGACATATGAGTAAGCCAAATAGCCCTCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCCTATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGAATA--TACGAAATATGCTCTGAAATCAAAGTAA-ATGAAGGCGGATTTAGTAGTAAAAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATTTCCCAGTTCAAAAGCTGGGATAAAACCACAAGACGAAAAGACCCTGTGGAACTTTTAAATGCCAGTCACC-ACATGAT-GAAACACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATT-CATTTAT-CTT-TA-CCTTAATCTAGGT-TTACACGCCGACATTAAATAA-TGCTCC---TTGACCCAGTCCTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTAAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_viridistriga_1 ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATTCTGACTAGAGGAGCCTGCTTCATAATCGATAACCCCCGCTCAACCCAACCTCCCCTTGAAATCTCGC-TTCAGCCTATATACCGCCGTCCT-CTA-AC-CGCTTACCTTCTGAAAGATATACGAGTAAGCCTAATAG-CCTCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCTCATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGAACA--TACGAATTATACTCTGAAACTAAAGTAA-ATGAAGGCGGATTTAGTAGTAAAAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCTCCCAGTCCAAAAGCTGGAATAAAAACACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ACATGATATTAATGCTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATTAAATTTAC-C-T-TA-CCTTAATTTAGGC-TTACACGCCAACATTAAA-GA-TGTT-C---TTGACCCAGTCCTACTGATTAAAGAAATAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTAAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_viridistriga_2 ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATTCTGACTAGAGGAGCCTGCTTCATAATCGATAACCCCCGCTCAACCCAACCTCCCCTTGAAATCTCGC-TTCAGCCTATATACCGCCGTCCT-CTA-AC-CGCTTACCTTCTGAAAGATATACGAGTAAGCCTAATAG-CCTCT-AGCTAAAAAGTCAGGTCAAGGTGTAGCTCATGGGAAGGAGAAAGTGGGCTACATTTTCTACTTCTAGAACA--TACGAATTATACTCTGAAACTAAAGTAA-ATGAAGGCGGATTTAGTAGTAAAAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCTCCCAGTCCAAAAGCTGGAATAAAAACACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ACATGATATTAATGCTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATTAAATTTAC-C-T-TA-CCTTAATTTAGGC-TTACACGCCAACATTAAA-GA-TGTT-C---TTGACCCAGTCCTACTGATTAAAGAAATAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTAAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 12s16s) = N: 1-779; CODONPOSSET CodonPositions (CHARACTERS = 12s16s) = N: 1-779; END; [ The following blocks are output data for analysis step 4642 ] BEGIN TREES; TITLE Tb9414; LINK TAXA = TaxaForAnalysisStep4642; TREE Fig._3B = [&R] (Ameiva_ameiva,Cnemidophorus_gramivagus,(Kentropyx_striata,(Kentropyx_calcarata_2,Kentropyx_calcarata_1),(Kentropyx_pelviceps,((Kentropyx_altamazonica_1,Kentropyx_altamazonica_2),((Kentropyx_vanzoi_2,Kentropyx_vanzoi_1),((Kentropyx_viridistriga_2,Kentropyx_viridistriga_1),((Kentropyx_paulensis_1,Kentropyx_paulensis_2),(Kentropyx_sp_1,Kentropyx_sp_2)))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5426] END;