#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 10, 2024; 0:44 GMT TreeBASE (cc) 1994-2008 Study reference: Cecchi L., Coppi A., & Selvi F. 2009. Phylogeny, karyotype evolution and taxonomy of Cerinthe (Boraginaceae). Taxon, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2232] [ The following blocks are input data for analysis step 4692 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4692; DIMENSIONS NTAX=19; TAXLABELS Cerinthe_alpina_Italy_Piedmont Cerinthe_alpina_Turkey Cerinthe_major Cerinthe_major_gymnandra Cerinthe_major_oranensis Cerinthe_major_purpurascens Cerinthe_minor_cleiostoma_Croatia Cerinthe_minor_cleiostoma_Greece Cerinthe_minor_maculata_Albania Cerinthe_minor_maculata_Greece Cerinthe_minor_maculata_Italy_Abruzzo Cerinthe_minor_maculata_Italy_Piedmont Cerinthe_minor_minor_Italy_Tuscany Cerinthe_palaestina Cerinthe_retorta Cerinthe_tenuiflora Echium_arenarium Neatostema_apulum Onosma_visianii ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3910] TITLE ITS_Cerinthe; LINK TAXA = TaxaForAnalysisStep4692; DIMENSIONS NCHAR=700; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Cerinthe_alpina_Italy_Piedmont TCGAATCC-TGCATAGCA-GAACCACTCGTGAACCTGTTAAAAAGAATCAGG-CAAAGGTCATA-GCGGGGCA----TCCTTGCTTTTGACCCGAGCCAAAATGGTGTCTTGGCATCTTGCCAATGGCGCTTAACCAACCCCCGGTGCGAGAAGCGCCAAGGAATACTTT-AACAAGGGCTTGAAACATCCTCTCCCGCTCGCGGGGTCTAGAGGATTGTAGATGGCTTCTTTCTAAATCTTAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGGCTAAAGGCACGTCTGCCTGGGCGTCACGCATCGCGTCATTCCA-TCCATAT-TTCTTTTGGATGTTTTGGATTGTGACCTCCTGTTTCTTCTA--GATGCAGTTGGTTGAAATTTGAGTCCGCAGATGAGGACTTCACGACAAGTGGTGGTTG-GATAACAACTCTTGTCATGTCGTGTTCCAAAGTTCTGCGACTCTCA------------------AGACCCTAAGGTGCC--CGTTGCCTGACTTTT-GAGTCG--GGAAACT-CGTGCT-TCGACCGCGACCCAAACACC?AAAAAACAACCAAACAAACCC?AACCACCA Cerinthe_alpina_Turkey TCGAATCC-TGCATAGCA-GAACCACTCGTGAACCTGTTAAAA-GAATCAGG-CAAAGGTCATA-GCGGGGCA----TCCTTGCTTTTGACCCGAGCCAAAATGGTGTCTTGGCATCTTGCCAATGGCGCTTAACCAACCCCCGGTGCGAGAAGCGCCAAGGAATACTTT-AACAAGGGCTTGAAACATCCTCTCCCGCTCGCGGGGTCTAGAGGATTGTAGATGGCTTCTTTCTAAATCTTAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGGCTAAAGGCACGTCTGCCTGGGCGTCACGCATCGCGTCATTCCA-TCCATAT-TTCTTTTGGATGTTTTGGATTGTGACCTCCTGTTT-TTCTA--GATGCAGTTGGTTGAAATT-GAGTC-GCAGATAGGAG--TCACGACAAGGGGTGGTTG-GATAACAACTCTTGTCACGTCGTGTTCCAAAGTTCTGCGACTCTCA------------------AGACCCTAAGATGCC--CGTTGCCTGACTTTT-GAGTCG--GGAAACT-CGTGCT-TCGACCGCGACCCAACCACC?AAAAAACAACCACACCCCCCC?AACCACCA Cerinthe_major TCGAATCC-GGCATAGCACAAACCACTTGTGAATGTGTGTAGATAAACCTGGGCAAAGGTCATA-GTGGGGCA----ATCTTGCTTTTGACCTGCGCCAAA-TGGTGTCTTGGCATCTTGCCAAT-GCGCTTAACCAACCCCCGGTGCGAGAAGCGCCAAGGAATACTTT-AACAAGGGCTTGAAACATCCTCTCCCG-TCGCGGGGCCTAGGGGATTGTGGAGGGCTTCTTTCTAAATCATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCTGAAGCCATTCGGCTAAAGGCACGTCTGCCTGGGCGTCACACATCGCGTCACCCCAATCCATATATTGTTGTGGATGAGGTGGATTCTGACCTCCTGTGTCTTGTA--GATGCAGTTTGTTGAAATTTGAGTCCGGAGATTAGGACTTCACAACAAGTGGTGGTTG-GATAACAACTAGCGTCATGTTGTGTTCCGAAGCTCTGTGACTCTCA------------------AGACCCTAAGGTGTG--CTTTTCCGGACTCTT-GAGTCACAGGAAACG-TGTGCTAT-GACTGCGACCAAAAAACC?ACAAACCACAAAAACAAACCC?AACAACAC Cerinthe_major_gymnandra TCGAATCC-GGCATAGCACAAACCACTTGTGAATGTGTGTAGATAAACCTGGGCAAAGGTCATA-GCGGGGCA----ATCTTGCTTTTGACCTGCGCCAAA-TGGTGTCTTGGCATCTTGCCAAT-GCGCTTAACCAACCCCCGGTGCGAGAAGCGCCAAGGAATACTTT-AACAAGGGCTTGAAACATCCTCTCCCG-TCGCGGGGCCTAGGGGATTGTGGAGGGCTTCTTTCTAAATCATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCTGAAGCCATTCGGCTAAAGGCACGTCTGCCTGGGCGTCACACATCGCGTCACCCCAATCCATATATTGTTGTGGATGAGGTGGATTCTGACCTCCTGTGTCTTGTA--GATGCAGTTTGTTGAAATTTGAGTCCGGAGACTAGGACTTCACAACAAGTGGTGGTTG-GATAACAACTAGCGTCATGTTGTGTTCCGAAGCTCTGTGACTCTCA------------------AGACCCTAAGGTGTG-GCTTTTCCGGACTCTT-GAGTCACAGGAAACG-TGTGCTAT-GACTGCGACCAAAAAACC?ACAAACCACAAAAACAAACCACAACAACAC Cerinthe_major_oranensis TCGAATCC-TGCATAGCA-GAACCACTTGTGAATGTGT--AAATAAACCTGGGCAAAGGTCATA-GTGGGGCA----ATCTTGCTTTTGACCTGCGCCAAA-TGGTGTCTTGGCATCTTGCCAAT-GCGCTTAACCAACCCCCGGTGCGAGAAGCGCCAAGGAATACTTT-AACAAGGGCTTGAAACATCCTCTCCCG-TCGCGGGGCCTAGGGGATTGTGGAGGGCTTCTTTCTAAATCATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCTGAAGCCATTCGGCTAAAGGCACGTCTGCCTGGGCGTCACACATCGCGTCACCCCAATCCATATATTGTTGTGGATGAGGTGGATTCTGACCTCCTGTGTCTTGTA--GATGCAGTTTGTTGAAATTTGAGTCCGGAGAGTAGGACTTCACAACAAGTGGTGGTTG-GATAACAACTAGCGTCATGTTGTGTTCCGAAGCTCTGTGACTCTCA------------------AGACCCTAAGGTGTG--CTTTTCCGGACTCTT-GAGTCACAGGAAACG-TGTGCTAT-GACTGCGACCCC?AAACC?ACAAACCACAAAAACAAACCC?AACAACAC Cerinthe_major_purpurascens TCGAATCC-TGCATAGCA-GAACCACTTGTGAATGTGT??A?ATAAACCTGGGCAAAGGTCATA-GCGGGGCA----ATCTTGCTTTTGACCTGCGCCAAA-TGGTGTCTTGGCATCTTGCCAAT-GCGCTTAACCAACCCCCGGTGCGAGAAGCGCCAAGGAATACTTT-AACAAGGGCTTGAAACATCCTCTCCCG-TCGCGGGGCCTAGGGGATTGTGGAGGGCTTCTTTCTAAATCATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCTGAAGCCATTCGGCTAAAGGCACGTCTGCCTGGGCGTCACACATCGCGTCACCCCAATCCATATATTGTTGTGGATGAGGTGGATTCTGACCTCCTGTGTCTTGTA--GATGCAGTTTGTTGAAATTTGAGTCCGGAGACTAGGACTTCACAACAAGTGGTGGTTG-GATAACAACTAGCGTCATGTTGTGT?CCGAAGCTCTGTGACTCTCA------------------AGACCCTAAGGTGTGTGCTTTTCCGGACTCTT-GAGTCACAGGAAACG-TGTGCTAT-GACTGCGACCCAAAAACC?ACAAACCACAAAAACAAACCAAAACAACAC Cerinthe_minor_cleiostoma_Croatia TCGAATCC-TGCATAGCA-GAACCACTCGTGAACCTGTTAAAA-GAATCAGG-CAAAGGTCATA-GCGGGGCA----TCCTTGCTTTTGACCCGAGCCAAA-TGGTGTCTTGGCATCTTGCCAATGGCGCTTAACCAACCCCCGGTGCGAGAAGCGCCAAGGAATACTTT-AACAAGGGCTTGAAACATCCTCTCCCGCTCGCGGGGTCTAGAGGATTGTAGATGGCTTCTTTCTAAATCTTAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGGCTAAAGGCACGTCTGCCTGGGCGTCACGCATCGCGTCATTCCA-TCCATAT-TTCTTTTGGATGTTTTGGATTGTGACCTCCTGTTTCTTCTA--GATGCAGTTGGTTGAAATTTGAGTCCGCAGATGAGGACTTCACGATAACTGGTGGTTG-GATAACAACTCTTGTCATGTCGTGTTCCAAAGTTCTGCGACTCTCA------------------AGACCCTAAGGTGCC--CGTTGCCTGACTTTT-GAGTCG--GGAAACT-CGTGCT-TCGACCGCGACCCAACCACC?ACAAAACAACCAAACAAACCC?AACCACCA Cerinthe_minor_cleiostoma_Greece TCGAATCC-TGCATAGCA-GAACCACTCGTGAACCTGTTAAAA-GAATCAGG-CAAAGGTCATA-GCGGGGCA----TCCTTGCTTTTGACCCGAGCCAAA-TGGTGTCTTGGCATCTTGCCAATGGCGCTTAACCAACCCCCGGTGCGAGAAGCGCCAAGGAATACTTT-AACAAGGGCTTGAAACATCCTCTCCCGCTCGCGGGGTCTAGAGGATTGTAGATGGCTTCTTTCTAAATCTTAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGGCTAAAGGCACGTCTGCCTGGGCGTCACGCATCGCGTCATTCCA-TCCATAT-TTCTTTTGGATGTTTTGGATTGTGACCTCCTGTTTCTTCTA--GATGCAGTTGGTTGAAATTTGAGTCCGCAGATGAGGACTTCACGATAACTGGTGGTTG-GATAACAACTCTTGTCATGTCGTGTTCCAAAGTTCTGCGACTCTCA------------------AGACCCTAAGGTGCC--CGTTGCCTGACTTTT-GAGTCG--GGAAACT-CGTGCT-TCGACCGCGACCCAACCACC?ACAAAACAACCAAACAAACCC?AACCACCA Cerinthe_minor_maculata_Albania TCGAATCCCTGCATAGCA-GAACCACTCGTGAACCTGTTAAAAAGAATCAGGGCAAAGGTCATA-GCGGGGCA----TCCTTGCTTTTGACCCGAGCCAAA-TGGTGTCTTGGCATCTTGCCAATGGCGCTTAACCAACCCCCGGTGCGAGAAGCGCCAAGGAATACTTT-AACAAGGGCTTGAAACATCCTCTCCCGCTCGCGGGGTCTAGAGGATTGTAGATGGCTTCTTTCTAAATCTTAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGGCTAAAGGCACGTCTGCCTGGGCGTCACGCATCGCGTCATTCCA-TCCATAT-TTCTTTTGGATGTTTTGGATTGTGACCTCCTGTTTCTTCTA--GATGCAGTTGGTTGAAATTTGAGTCCGCAGATGAGGACTTCACGACAAGTGGTGGTTG-GATAACAACTCTTGTCATGTCGTGTTCCAAAGTTCTGCGACTCTCA------------------AGACCCTAAGGTGCC--CGTTGCCTGACTTTT-GAGTCG--GGAAACT-CGTGCT-TCGACCGCGACACAAAAACC?ACAAAACAACCAAACAAACCC?AACCACCA Cerinthe_minor_maculata_Greece TCGAATCC-TGCATAGCA-GAACCACTCGTGAACCTGTTAAAA-GAATCAGG-CAAAGGTCATA-GCGGGGCA----TCCTTGCTTTTGACCCGAGCCAAA-TGGTGTCTTGGCATCTTGCCAATGGCGCTTAACCAACCCCCGGTGCGAGAAGCGCCAAGGAATACTTT-AACAAGGGCTTGAAACATCCTCTCCCGCTCGCGGGGTCTAGAGGATTGTAGATGGCTTCTTTCTAAATCTTAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGGCTAAAGGCACGTCTGCCTGGGCGTCACGCATCGCGTCATTCCA-TCCATAT-TTCTTTTGGATGTTTTGGATTGTGACCTCCTGTTTCTTCTA--GATGCAGTTGGTTGAAATTTGAGTCCGCAGATGAGGACTTCACGACAAGTGGTGGTTG-GATAACAACTCTTGTCATGTCGTGTTCCAAAGTTCTGCGACTCTCA------------------AGACCCTAAGGTGCC--CGTTGCCTGACTTTT-GAGTCG--GGAAAGT-CGTGCT-TCGACCGCGACCCAACCACC?ACAAAACAACCAAACAAACCC?AACCACCA Cerinthe_minor_maculata_Italy_Abruzzo TCGAATCCCTGCATAGCA-GAACCACTCGTGAACCTGTTAAAA-GAATCAGG-CAAAGGTCATA-GCGGGGCA----TCCTTGCTTTTGACCCGAGCCAAA-TGGTGTCTTGGCATCTTGCCAATGGCGCTTAACCAACCCCCGGTGCGAGAAGCGCCAAGGAATACTTT-AACAAGGGCTTGAAACATCCTCTCCCGCTCGCGGGGTCTAGAGGATTGTAGATGGCTTCTTTCTAAATCTTAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGGCTAAAGGCACGTCTGCCTGGGCGTCACGCATCGCGTCATTCCA-TCCATAT-TTCTTTTGGATGTTTTGGATTGTGACCTCCTGTTTCTTCTA--GATGCAGTTGGTTGAAATTTGAGTCCGCAGATGAGGACTTCACGATAACTGGTGGTTG-GATAACAACTCTTGTCATGTCGTGTTCCAAAGTTCTGCGACTCTCA------------------AGACCCTAAGGTGCC--CGTTGCCTGACTTTT-GAGTCG--GGAAACT-CGTGCT-TCGACCGCGACACAACCACC?ACAAAACAACCAAACAAACCC?AACCACCA Cerinthe_minor_maculata_Italy_Piedmont TCGAATCC-TGCATAGCA-GAACCACTCGTGAACCTGTTAAAA-GAATCAGG-CAAAGGTCATA-GCGGGGCA----TCCTTGCTTTTGACCCGAGCCAAA-TGGTGTCTTGGCATCTTGCCAATGGCGCTTAACCAACCCCCGGTGCGAGAAGCGCCAAGGAATACTTT-AACAAGGGCTTGAAACATCCTCTCCCGCTCGCGGGGTCTAGAGGATTGTAGATGGCTTCTTTCTAAATCTTAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGGCTAAAGGCACGTCTGCCTGGGCGTCACGCATCGCGTCATTCCA-TCCATAT-TTCTTTTGGATGTTTTGGATTGTGACCTCCTGTTTCTTCTA--GATGCAGTTGGTTGAAATTTGAGTCCGCAGATGAGGACTTCACGATAACTGGTGGTTG-GATAACAACTCTTGTCATGTCGTGTTCCAAAGTTCTGCGACTCTCA------------------AGACCCTAAGGTGCC--CGTTGCCTGACTTTT-GAGTCG--GGAAACT-CGTGCT-TCGACCGCGACCCAACCACC?ACAAAACAACCAAACAAACCC?AACCACCA Cerinthe_minor_minor_Italy_Tuscany TCGAATCCCTGCATAGCA-GAACCACTCGTGAACCTGTTAAAA-GAATCAGG-CAAAGGTCATA-GCGGGGCA----TCCTTGCTTTTGACCCGAGCCAAA-TGGTGTCTTGGCATCTTGCCAATGGCGCTTAACCAACCCCCGGTGCGAGAAGCGCCAAGGAATACTTT-AACAAGGGCTTGAAACATCCTCTCCCGCTCGCGGGGTCTAGAGGATTGTAGATGGCTTCTTTCTAAATCTTAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGGCTAAAGGCACGTCTGCCTGGGCGTCACGCATCGCGTCATTCCA-TCCATAT-TTCTTTTGGATGTTTTGGATTGTGACCTCCTGTTTCTTCTA--GATGCAGTTGGTTGAAATTTGAGTCCGCAGATGAGGACTTCACGATAACTGGTGGTTG-GATACCAACTCTTGTCATGTCGTGTTCCAAAGTTCTGCGACTCTCA------------------AGACCCTAAGGTGCC--CGTTGCCTGACTTTT-GAGTCG--GGAAACT-CGTGCT-TCGACCGCGACACAACCACC?ACAAAACAACCAAACAAACCC?AACCACCA Cerinthe_palaestina TCGAATCC-TGCATAGCA-GAACCACTCGTGAACTTGTTCAAA-GAACAAGG-CAAAGGTCACA-GCGGGGCA--CATCCTTGCTTTTGACCCGAGCCAAA-TGGTGTCTTGGTATCTTGCCAATGACGCTTAACCAACCCCCGGCGCGAGAAGCGCCAAGGAATACTTT-AATGAGGGCTTGAAACATCCTCTCCCGCTCGCGGGGTCTAGAGGATTGTACATGGCTTCTTTCTAAATCTTAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGGCTAAAGGCACGTCTGCCTGGGTGTCACGCATCGCGTCACTCCA-TCCATAT-TTCTTTTGGACGTTGTGGATTGTGACCTCCTGTTTCTTCTA--GATGCAGTTGGTCAAAATTTGAGTCCGGAGATTAGGACTTCACGACAAGTGGTGGTTG-GATAACTACTCGCGTCATGTCGTGTTCCAATGTTCTGTGACTGTCA------------------AGACCCTAAGGTGCC--TGTTGCCTGACTTTTGAAGTCG--GGAAACG-TGTGCTAT-GGCTGCGACCCAACCACACACAAAACAACCAAACAAACCC?AAACACAC Cerinthe_retorta TCGAATCC-TGCATAGCA-GAACCACATGTGAACCTGTT-AAA-GAACCAGG-CAAAGGTCACA-GCGGGGCA--CATCCTTGCTTTTGACCCGAGCCAAA-TGGTGTCTTGGCATCTTTCCAATGGCGCTTAACCAACCCCCGGCGCGAGAAGCGCCAAGGAATACTTT-AACGAGGGCTTGAAACATCCTCTCCCGCTCGCGGGGTCTAGAGGATTGTAGATGGCTTCTTTCTAAATCTTAACGACTCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGGCTAAAGGCACGTCTGCCTGGGCGTCACGCATCGCGTCACTCCA-TCCATGT-TTCTTTTGGTCGTTGTGGATTGTGACCTCCTGTTTCTTCTA--GATGCAGTTGGTCGAAATTTGAGTCCGGAGATTAGGACTTCACGACAAGTGGTGGTTG-GAAAACAACTCGCGTCATGTCGTGTTCCAAAGTTCTGTGACTCTCA------------------AGACCCTAAGGTGCC--TGTTGCCTGACTTT--GAGTCG--GGAAACT-CGTGCTTTCGACCGCGACCCACCCACACACAAAACAACCAAACAAACCC?AC?CACAA Cerinthe_tenuiflora TCGAATCC-TGCATAGCA-GAACCACTTGTGAACTTGTTAAAA-GAATCAGG-CAAAGGTCATA-GCGGGGCA----TCCTTGCTTTTGACCTGAGCCAAA-TGGTGTCTTGGCATCTTGCCAATGGCGCTTAACCAACCCCCGGTGCGAGAAGCGCCAAGGAATACTTT-AACAAGGGCTTGAAACATCCTCTCCCGCTCGCGGGGTCTAGAGGATTGTAGATGGCTTCTTTCTAAATCTTAACGACTCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGGCTAAAGGCACGTCTGCCTGGGCGTCACGCATCGCGTCACTCCA-TCCATAT-TTCTTTTGGATGTTGTGGATTGTGACCTCCTGTTTCTTCTATAGATGCAGTTGGTTGAAATTTGAGTCCGCAGATGAGGACTTCACGACAACTGGTGGTTTTGTTAACAACTCTTGTCATGTTGTGTTCCAAAGTTCTGCGACTCTCA------------------AGACCCTAAGGTGCC--CGTTGCCTGACTTTT-GAGTCG--GGAAACT-CGTGCT-TCGACCGCGACCCAACCACC?ACAAAACAACCAAAAAAAACC?AACCACCA Echium_arenarium TCGAATCC-TGCATAGCA-GAACCACTCGAGGACATGTTAACAAACCCCAGG-GGACG-TCGAACGCAGGGAT--AC--CTTTCGCTCGATTGTCTCCTGACG-TCGCCATGGCATTA-GTCGGTGGCGACAAACAAACCCCCGGCGCGAGAAGCGCCAAGGAATACTTTTAACAACAGCCATAACCATCCTCTCCCGCTCGCGGGGCTAAGGGGATCGGAGATGGCTTATTTGAAAACCACAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGGCCGAAGGCACGTCTGCCTGGGCGTCACGCATCGCGTCACCCAT-CCACTGACTCCCGTCGGATGAGGTGGATTCTGACCTCCTGTGCCTCTA---GGCGTAGTTGGTCGAAATTCGAGTCCGGAGCTTAGGACCTCACGACAAGTGGTGGTTG-GATAACAACTAGTGTCATGTCGTGTGCCAAAACTTCGTGCCTCTCA------------------AGACCCTAAGGTACGTGTCTCCTACACATTTTAAGTTGAGAGATGTCTGCGTGCT-ACGACCGCGACCCAAACCAACCACCAAAAACAAAC?AAACCAAAAAAAACA Neatostema_apulum TCGAATCC-TGCATAGCA-GAACCACTCGCGAACAAGTTCAAA-AACTCGGGGCAACGGTCATA-GCGGGGAATACCACCTTGTTACTGACCCGAGCCTAA-CGGTGCATTGGCTTCTTGCCAGGTGTGCTAAACAAACCCCCGGCGCGAGAAGCGTCAAGGAATACTTT-AACAAGAGCTTGAACCGTCCT-TCCCGCTCGCGGGGCTTAAAGGATTGGAGATGGCTTCTTTATAAACCACAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGGCTAAAGGCACGTCTGCCTGGGCGTCACGCATCGCGTCACCCCA-TCCATAT-TTCATTTGGATGAGGTGGATTGTGACCTCCTGTTTCTTTCA--GATGCAGTTGGTCGAAATTCGAGTCCGGAGTTTAGGACTTCACGACAAGTGGTGGTTG-GATAACAACTCGCGTCATGTCGTGTGCCAAACCTCTGTGCTTCTTA------------------AGACCCTAAGGTGCG--CGTTACC-GACTCTT-ACGTTG--GGAAGCT-CGTGCT-ACGACCGCGACCCAACAACAAACAAAACCACCAAACAAACCC?CACCACCA Onosma_visianii TCGAATCC-TGCACAGCA-GAACCACTCGCGAACAAGTCAACAAACTCCAGG-CGACGGACAAATGCCGGGAA--ACACCCTGCACTTGACCGTGGCCCGGCACTCGCCGTGGCACCT-GCCA-CGGCGATTAACAAACCCCCGGCGCGAGAAGCGCCAAGGAATACTTT-AACAAGGGCCCGAACCAACCTCTCCCGTTCGCGGGGATTAGGGGCATGGAGACGGCTTCTTTCTAAATCACAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAGGCCGTTAGGCTAAAGGCACGTCTGCCTGGGCGTCACGCATCGCGTCACCCCA-TCTCCAATTCT-GGCAGATGAGGTGGATTCTGACCTCCTGTGCCTCCA---GGCGCAGTTGGTCGAAATTCGAGTCCGGAGCTTAGGACTTCACGACAAGTGGTGGTTG-GATAACAACTCGCGTCATGCCGTGTGCCGAACCTCCGTGCCTCCCATGGCCGAACAGTCGGCTAAGACCCTAAGATGCGCGCTTCCCACGCTCGTTTGAGTGGGAG---TCT-CGTGCT-ACGCATGCGACCCAAACAAACAAACCACAACACAC?AAACAAAAAAACCCA ; END; BEGIN SETS; CHARSET gaps (CHARACTERS = ITS_Cerinthe) = 661-700; CHARSET region1_nuc (CHARACTERS = ITS_Cerinthe) = 1-660; CHARSET region1_gaps (CHARACTERS = ITS_Cerinthe) = 661-700; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS_Cerinthe) = N: 1-700; CODONPOSSET CodonPositions (CHARACTERS = ITS_Cerinthe) = N: 1-700; END; [ The following blocks are output data for analysis step 4692 ] BEGIN TREES; TITLE Tb9464; LINK TAXA = TaxaForAnalysisStep4692; TREE PAUP_1 = [&R] (((((((Cerinthe_minor_maculata_Greece,((Cerinthe_minor_maculata_Italy_Abruzzo,Cerinthe_minor_minor_Italy_Tuscany),Cerinthe_minor_maculata_Italy_Piedmont,Cerinthe_minor_cleiostoma_Croatia,Cerinthe_minor_cleiostoma_Greece),(Cerinthe_alpina_Italy_Piedmont,Cerinthe_alpina_Turkey)),Cerinthe_minor_maculata_Albania),Cerinthe_tenuiflora),(Cerinthe_palaestina,Cerinthe_retorta)),(((Cerinthe_major_gymnandra,Cerinthe_major),Cerinthe_major_oranensis),Cerinthe_major_purpurascens)),Neatostema_apulum),(Echium_arenarium,Onosma_visianii)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5451] END;