#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 19, 2025; 16:30 GMT

TreeBASE (cc) 1994-2008

Study reference:
Davis J., Simmons M., Stevenson D., & Wendel J. 1998. Data decisiveness, data quality,
and incongruence in phylogenetic analysis: and example from the monocotyledons
using mitochondrial atpA sequences. Systematic Biology, 47(2): 282-310.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S398]

[ The following blocks are input data for analysis step 470 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep470;
        DIMENSIONS NTAX=20;
        TAXLABELS
            Acorus
            Alstroemeria
            Anigozanthos
            Canna
            Catopsis
            Curculigo
            Eriocaulon
            Flagellaria
            Gymnostachys
            Nypa
            Oryza
            Piper
            Saruma
            Smilax
            Symplocarpus
            Tacca
            Trillium
            Vellozia
            Veratrum
            Xanthorrhoea
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2089]

	TITLE atpA;
	LINK TAXA = TaxaForAnalysisStep470;
	DIMENSIONS NCHAR=110;
	FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 A T G C" MISSING=? GAP= -;

MATRIX
[                        10        20        30        40        50        60        70        80        90        100       110]
[                         .         .         .         .         .         .         .         .         .         .         .]
Acorus           1GAT?AGTGAGCCTAGAATTTGAAACGCAAATTTAAGC????GAAGATAGTATTTACGCAA?AAAGCTTTC?ATTT?TAATAATT?TATCAC?CGTAAT?TTGAACATTA
Alstroemeria     0AAGCGTTTGACTTGGGGCACCGGGTGCAGTTATAGTACCTCGGAGGTAAAAAGAGCGCAATGGAGCATCTGACCTACAATGGTCTCGTCACTCGTCAATAGTCAGGAGA
Anigozanthos     0AATCGTTGGACTTGGGGTACCAGGTTAATTTATAGGACCTCAGAGGTAATGTGAGCGCAATGGAGCATCTGACCTATAATGGTCTCATCACTCGTCAAGATTCAGG?TC
Canna            ?AAGCGTTTGACTTGGGGCACCAGGTTAATATATAG?AG?????AGGCAATGTGTGCGCAATGGAGCATCTCACCTACAATGGTCTCGTCACTCGTCAAGATTCAGGAGC
Catopsis         1AAGCGTTTGACCTGGCACACGAGGTTAATTTATAGGA????GGAAGCAATGTGTGCGCTAAGGAGCATCTGACCTTC?TTAGTCTCGTCACTCGTCATTAGTCTGGAGC
Curculigo        0AAGCGTTTGACTTGGGGCACGAAGTTAAT?TATAGGCCCTCGGAGGCAATGTTTACGCAATGGAGCTTTTGACCTACATAGA?TTCATCATACGCAAATAGTCAG?ATC
Eriocaulon       1A?GC?TGTGAC?TGGGGCTT?AAGTGCATTAATAAGA????GGTAGGAAAGTGTGCACTAAGGAGCATCTGACTTATAATAGTCTC?TCACTCGTCAAGTGTCAGTACC
Flagellaria      0GAGCGTTTGACTTGGCACACCAGGTTAATTTATAGGACAAAGGTAGGGATGTGTGCGCTAAGGAGCATCTGACTTTTAATAGTTTCGTCACTCGTCAAGAGTCAGGACC
Gymnostachys     0AGTGAGTTGGCTTGGGGCATGAGGTTAATATTTAGGACCTCGGAGGTAATGTGTGCGCCATGGAGC?TCCGACTAATAATAGCCACGTCACTTTTAAATAGTCAC?T?C
Nypa             0AAGCGTTTGACTTGGC?CACGAGGTTAATTTATAGTACCTCAGAGGCAATGTGTGAGCTATGGAGCATCTGACCTACAATGGTCTCGTCACTCGCCAATAGTCAGAAG?
Oryza            0AAGCGTTTGACTTGGCACACCAGGTTAATAAATAGGACAAAGGTAGTAATGTGAGCGCTAAGGAGCATTTGACTTATATTAGTTTCGTCACTCGTCAATAGGAAGGTCC
Piper            0AGTGATGTAATTCGAAG?ATGTGGTTACTTGTCGGAACCGAGGAGATAATGTTTGCGTTCTGGAGCTCTCCTCCTTCA??AGTCTCGCTTTTTACACATAAGAACGAGC
Saruma           0AGTGATGTAATTTGAAGCATGTGGTTACTTGTCGGAACCGAGGAGATAATGTTTGCGTTCTGGAGCTCTCCTCCTTCATTAGTCTCGCTTTTTACACATAAGAACGA?C
Smilax           0AAGCGTTTGACTTGGGGCACCGGGTGCAGTTATAGTACCTCGGAGGTAAAATGTGCGCAATGGAGCATCTGACCTACAATGGTCTCGTCACTCGCCAATAGTCACTACC
Symplocarpus     0AGGGAGTTGACTCGGGGCACGAGGTTAATTTTTAGGACCTCGGAGGTAATGTGTGCGCCATGGAGCATCCGACTAATAATAGCCACGTCACTTTTAAATAGTCAGGTGC
Tacca            0AAGCGTGTGACTTGGGGCATGAGGTTAATTTTTAGTAGCTCGGAGGCAATATGTGCACAATGAAGCATCTGACCT?CGTTGGTCTCGTCACTCGTCAAGAGTCACTA?C
Trillium         0AAGCGTTTGACTTGGGGCAC?GAATGCAGTTATAGGACCTCGAAGGCAGAATGTGCGCCATAGGCTATCTGATCTACA?TGGT?TCGTCACTCGTAAATAGTCTGGAG?
Vellozia         0AAGCGTTTGACTTGGCGC?CCAGGCTAATTTATAGGACCTCGGAGGTAATGAGTGCGCAATGGGCTTTTTCACTTATGATAGTTTTGTCACTCGTCAATAGTCAGGATC
Veratrum         0AAGCGTTTGA?TTGGGGCACCGAATGCAAATATAGGCCAAAGGAGG?GAAATGTGAGCTATGGGCTATTCCACCTACAATGGTCTCGTCACTCGCCAATAGTCAGGA?C
Xanthorrhoea     0AATCGTTTGACTTAGGACACGAAGTTAATATATAGGACCTCGGAGGCAATGTGTGCGCAATGGAGCTTCTGACCTACATAAGTCTCGTCACACGCCAATAGTCAGGATC
;
END;

[ The following blocks are output data for analysis step 470 ]
BEGIN TREES;
      TITLE Tb5250;
      LINK TAXA = TaxaForAnalysisStep470;
      TREE Fig._3b = [&R] (Piper,Saruma,(Acorus,((Gymnostachys,Symplocarpus),((Vellozia,(Oryza,(Eriocaulon,Flagellaria))),(Catopsis,(Nypa,((Tacca,(Curculigo,Xanthorrhoea)),((Anigozanthos,Canna),((Alstroemeria,Smilax),(Trillium,Veratrum))))))))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3355]


END;