#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 20, 2025; 2:23 GMT TreeBASE (cc) 1994-2008 Study reference: Islam M., & Simmons M. 2006. A Thorny Dilemma: Testing Alternative Intrageneric Classifications within Ziziphus (Rhamnaceae). Systematic Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2373] [ The following blocks are input data for analysis step 4822 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4822; DIMENSIONS NTAX=71; TAXLABELS Alphitonia_aff._incana Ampelozizyphus_amazonicus Bathiorhamnus_cryptophorus Ceanothus_coeruleus Colubrina_asiatica Colubrina_reclinata Condalia_microphylla Cryptandra_cf._spyridioides Doerpfeldia_cubensis Hovenia_dulcis_Chase968 Hovenia_dulcis_Goodwin619814 Hovenia_dulcis_USNA24752 Hovenia_trichocarpa Lasiodiscus_mildbraedii Nesiota_elliptica Noltea_africana Paliurus_hemsleyanus_03 Paliurus_hemsleyanus_04 Paliurus_ramosissimus_06 Paliurus_ramosissimus_07 Paliurus_spinachristi Phylica_nitida Phylica_polifolia Phylica_pubescens Pomaderris_rugosa Reissekia_smilacina Rhamnus_glandulosa Rhamnus_lycioides Siegfriedia_darwinioides Spyridium_globulosum Trichocephalus_stipularis Trymalium_ledifolium Ventilago_viminalis Ziziphus_acidojujuba_05 Ziziphus_acidojujuba_06 Ziziphus_amole Ziziphus_calophylla Ziziphus_celata_01 Ziziphus_celata_02 Ziziphus_glabrata Ziziphus_glabratagen Ziziphus_guatemalensis_12 Ziziphus_guatemalensis_14 Ziziphus_horsfieldii Ziziphus_jujuba_DBG682201016 Ziziphus_jujuba_UCBGE57170001 Ziziphus_jujuba_USNA_MA48915 Ziziphus_jujuba_USNA_NA65890 Ziziphus_jujuba_USNA_NA9622 Ziziphus_jujuba_ZhaoJin_s.n. Ziziphus_lotus Ziziphus_mauritiana_02 Ziziphus_mauritiana_12 Ziziphus_mauritiana_16 Ziziphus_mistol_13 Ziziphus_mistol_30 Ziziphus_mucronata_15 Ziziphus_mucronata_20 Ziziphus_obtusifolia_var._canescens Ziziphus_obtusifolia_var._obtusifolia_14 Ziziphus_obtusifolia_var._obtusifolia_19 Ziziphus_oenopolia_Astuti_s.n. Ziziphus_ornata Ziziphus_pubescens_11 Ziziphus_pubescens_12 Ziziphus_rugosa Ziziphus_spinachristi_13 Ziziphus_spinachristi_14 Ziziphus_spinachristi_15 Ziziphus_taylori Ziziphus_thyrsiflora ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2808] TITLE trnLF; LINK TAXA = TaxaForAnalysisStep4822; DIMENSIONS NCHAR=527; FORMAT DATATYPE=Standard SYMBOLS= "A C G T 4 5 6 7 8 9 B D E F H J K L M N P Q R 0 1 2" MISSING=? GAP= -; CHARSTATELABELS 510 'EF3-8' / A '4-8' '3-8', 511 EF32 / A 32, 512 'EF86-92' / A '86-92', 513 'EF141-145' / A '141-144' '141-145', 514 'EF171-184' / A '175-184' '179-184' '171-184' '171-185' '169-236', 515 'EF252-259' / A 257 '252-259', 516 'EF269-282' / A '269-274' '269-277' '269-282', 517 'EF316-330' / A '327-329' '326-329' '325-329' '324-329' '323-329' '320-329' '323-330' '321-330' '325-330', 518 'EF364-367' / A '364-367', 519 'EF384-388' / A '384-387' '384-388', 520 EF391 / A 391, 521 'EF399-403' / A '399-403', 522 'EF439-444' / A '439-444' 444, 523 'EF487-488' / A 487 '487-488', 524 EF497 / A 497, 525 'EF293-297' / A '293-297', 526 'EF100-138' / A '100-138' '118-122,134-138' '110-114,134-138' '123,134-138', 527 'EF499-500' / A '499-500' 499, ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Alphitonia_aff._incana CAAAAAGGCCCATTT-GATTACCTAATTTTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCGC-------ATTCATT---------------------------------------AATCTTTTTCTTTTCACA------AGCCTTGT--------------GGTATATATGATACACGTACAAATGAACATCGTTGAGCAAGTAACCCCGATTGTAAATTGGAATAAT--------CATATTATT--------------GCTC??-----ACTGAAACTTACAAAGTCTTCTTTTT----------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGT-----CTTTTTAATTGACAGAG-CCCAAGTCATCTGTTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAGGACTGAAAATC0010T2T61111100?10 Ampelozizyphus_amazonicus CAAAAAGGCCCATTG-GATTCCCTAATTATTTATCCTATACTC-----TCATTTTGTTAGCGGTTCAAAATTCGTTATGGTTCGC-------ATTCATTCTACTCT???-----??AAATGAATCTAATCGTA-----AA-----TTCTTTTCACA------AGCCTTTT--------------GATATATATGATACACGTACAAATGAACATCGTTGAGCAAATAACTCCGATTGTAAATTGGAATGATTAACAATACATATTATT--------------ACTCGGACTGTACTGAATCTTACAAAGTCTTCTTTTT----------GAAGAT-CCAAGAA---ATTCCACCAAAGCCTGACTGGATAAGACTTTGTAATT----CCC-TTTTTGT-----CTTTTTAATTGACGAAGACCCAAGTCATCTATTAAAATTACAATCAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTG-TAGAGC-AGAG-ACTGA-----0012T0T601110100T2 Bathiorhamnus_cryptophorus ----------------------------????ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGGTTCGC-------ATTCATTCTACTCT???-----??AAATGGATCTGAGCGTA-----AA-----TTCTTTTCACA------AGCCTTTT--------------GATATATACGATACACGTACAAATGAACATCGTTGAGCAAGTAATTCCGATTGTAAATTGGAATGATTAACAATACATATTATT--------------ACTCGGACTGTACTAAATCTTACAAAGTCTTCTTTTT----------GAAGAT-CCAAGAA---ATTCCACCAAAGCCCGGCCGGATAAGACTTTAAATTC-----CC-TTTTCAT-----CTTTTTAATTGACGGAGACCCAAGTCATCTATGAAAATTAAAATCAGGATAATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGCGAGAGGACTGAA--????12T0T602110000T0 Ceanothus_coeruleus CAAAAAGGCCCATTT-GATTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCGTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTT----------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGGTGATGCGTCGTGAATGGTCGGGATAGCTCAGCTG-T---------------------0010T2T6111111?01? Colubrina_asiatica --------------------------------ATACTCTCATT-----TCATTTCGTTAGCGGGTCAAAATTCGTTATGTTTCTCGTTTCTCATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTATATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTGCAAAATCTTCTTTTT----------GAAGAT-CTAAGAA---ATTTTAACAAGGTCTGG----CTAAGACTTTGTAATC----CCC-TTTTCGC-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCAGCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGG-AGAG-A-TGAA----??10T2T61111100012 Colubrina_reclinata CAAAAAGGCCCATTT-GATTCCCTAATTTTTTATCCTATACTCGCATTTCATTTCGTTAGCGGTTCAAAATCCGTTATGTTTCTCGTTTCTCATTCATT---------------------------------------AATTTTTTTCTTTTTACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATTATTGAGCAAGTAACCCCGATTTTATATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTGCAAAATCTTCTTTTT----------GACGAT-CTAAGAA---ATTCCACCACGGCCTGG----CTAAGACTTTGTAATC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAAAATAA-AATGAGGATGATGCAGCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAGGACTGA-----0010T2T61111200010 Condalia_microphylla CAAAAAGTCCCTATTGGATTCCCTAATTCTTTATCCTATGCTC-----TCAGTTCGTCAACGGTTCAAAATTCGTTATGTTTCTC-------ATTCATTCTACTCTTTTACTTTACAAATGG-TCTGAGCGGA-----AATTTGTTTCTTTTCACA------AGCCTTGTGATATTGTGATAT?GATATATAGGATACACGTACAAATGAACATCGTTGGGCACGTAACCCCGATTGTAAATTGTAATGATTAACAATACATATTATT--------------ACTTGTACTGTACTGAAACTTACAAAGTCTTCTTTTT----------GAAGAT-CCAAGAA---ATTCCACCAAGACCCGG----ATAAGGTTTTGTAATC----CCC-TTTTCGT-----CTTTTTCATTGACATAGAACCAAGTCCTCTATTAATATTAAAATGAGGATGGTGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGG-AGAGGACTGAA--??001000T61111000040 Cryptandra_cf._spyridioides CAAAAAGGCCCAGTT-GATTCCCTAATTTTTTATCCCATACCC-----TCGTTTCGTTATCGGTTCAAAATTCATTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GGTATATATGATACACATACAAATGAACATCGTTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCCCGTACTGTACTGAAACTTACAAAGTCTT???????????------AAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAACACTTTGTAACC----CCC-TTTTCGT-----CTTTTTAATTGACAGAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AG-GGACTGAA----0010T2T91111101010 Doerpfeldia_cubensis CAAAAAGGCCCATTG-TATTCCCTAATTATTTATCCTATACTC-----TCATTTTGTTAGCGGTTCAAAATTCGTTATGGTTCGC-------ATTCATTCTACTCT???-----??AAATGTATCTAATCGTA-----AA-----TTCTTTTCACA------AGCCTTTTTTTT----------GATATATATGATACACGTACAAATGAACATCGTTGACCA-----CTCC-ATTGGAA-------TGATTAACAATACATATTATTACTACATAATTATTACTCGGGCTGTGCTGAATCTTAAAAAGTCTTCTTTTT----------GAAGAT-CCAAGAA---ATTCCACCAAAGCCTGACTGGATAAGACTTTGTAATT----CCC-TTTTTGT-----ATTTTTAATTGACGAAGACCCAAGCCATCTATGAAAATTACAATCAGGATGATGCGCCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAG-AC--------0012100601110000T2 Hovenia_dulcis_Chase968 CAAAAAGGCCCTTTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGAGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTT-------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAACC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGCCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTG-TAGAGG-AGAG-ACTGA-----0110T2T51111110012 Hovenia_dulcis_Goodwin619814 CAAAAAGGCCCATTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGAGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTT-------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAACC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAGGACTGAAAATC0110T2T51111100010 Hovenia_dulcis_USNA24752 CAAAAAGGCCCTTTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGAGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTT-------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAACC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGCCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-A{AG}AGGACTGAAAATC0110T2T51111100010 Hovenia_trichocarpa CAAAAAGGCCCATTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGAGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTT-------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAACC----CCC-TTTTCGT-----CTTTTTAATTGACATA{AG}ACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCG{GT}GAATGG{CT}CGGGATAGCTCA{CG}CTGGTA{AG}AGC-A{AG}AGGACTGAAAATC0110T2T51111100010 Lasiodiscus_mildbraedii CAAAAAGGCCCATTT-GATTCCCTAGTATTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCAAT---------------------------------------AATTTGTTTCTTTTCACA------AGCCTTGT---------------?TATATATGATACACGTACAAATGAACATCATCGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTT----------GAAGAT-CTAAGAAGAAATTCCGCCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTG--AAGGC-AGAGGACTGAA--??0010?2T61111120010 Nesiota_elliptica CAC-----CCATTTG-GATTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------CATTTTTTTATTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCCCGTACTGTATTGAAACTTACAAAGTCTTCGTTTT----------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGT---------------------1010T2T6111110?01? Noltea_africana CA------CCCATTT-GATTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------?---------------------------------------------AATTTTTTTATTTTCACA------AGCCTTGT--------------GATATATATGATACACGNACAAATGAACATCATTGAGCACGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTATTGAAACTTACAAAGTATTTT--------------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGT-----CTTTTTAATAGACATAGAACCAAGTCATCTATTCA------AATGAGGATGATGCGTCGAGAA-------------------------------------------20?0T2T?11111??01? Paliurus_hemsleyanus_03 ----------------GATTCC-TAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCCCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTTTT-----GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGT----ATATGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAG-------------------------------?110T2TT11111??01? Paliurus_hemsleyanus_04 CAAAAAGGCCCATTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCCCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTTTT-----GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGT----ATATGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-A{AG}AGGACTGAAAATC0110T2TT1111100010 Paliurus_ramosissimus_06 CAAAAAGGCCCATTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAACAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATCATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTTTT-----GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCG{CT}-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCG{CT}CG{GT}GAA{GT}GG{CT}CGG{AG}ATA{CG}CTCA{CG}C{GT}GGTA{AG}AGC-A{AG}AGGACTGAAAATC0110T2TT1111100010 Paliurus_ramosissimus_07 CAAAAAGGCCCATTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAACAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATCATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTTTT-----GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCG--------------------------------------------------0110T2TT11111??01? Paliurus_spinachristi CAAAAAGGCCCATTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCTGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTTTT-----GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCA{CG}CTGGTA{AG}AGC-A{AG}AGGACTGAAAATC0110T2TT1111100010 Phylica_nitida CA------CCCATTT-GATTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTGATTTTCACA------AGCCTTGT--------------AATATATATGATACACGTACAAATGAACATCATTTAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------TCTCGTACTGTATTGAAACTTACAAAGTCTTCTTTTT----------GAAGAT-TTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAG-ACTGA-----2010T2T61111100012 Phylica_polifolia CA------CCCATAT-GACTCCTTAATTTTTTATCATATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTGATTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTTAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTACC--------------GCTCGTACTGTATTGAAACTTACAAAGTCTTCTTTTT----------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGT---------------------2010T2T6111110?01? Phylica_pubescens CA------CCCATTT-GATTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTGATTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTTAGCAAGTAACCCCGATTGTAAATTGGAATGGT--------CATATTATC--------------GCTCGTACTGTATTGAAACTTACAAAGTCTTCTTTTT----------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGACTGGTCGGGATAGCTCAGCTGGTAGAA--AGAG--CTGAACAG-2010T2T61111100011 Pomaderris_rugosa --------------------------------ATCGTAAACTC-----TCATTTCGTTATCGGTTCAAAATTCATTATCTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GGTATATATGATACACATACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCCCGTACTGTACTGAAACTTACAAAGTCTT?????????--------AAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAACACTTTGTAATC-----CC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAAT?-TC--------------------------------------??10T2T712111??01? Reissekia_smilacina --AAAAGGCCCATTT-GATTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAACTCTGTTATGTTTCTC-------ATTCATT---------------------------------------AA????????????CACA------AGCCTTGT---------------ATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACTCCGATTGTA????------ATTGTAAATTGGAATGATC------ATATTATCACTCGTACTGTACTGAAACTCACAAAGTCTTCTTTTTTTT-------GAAGAT-CTAAGAA---ATTCCACCAAGGCCCGG----ATAAGACTTTGTAATC-----CCTTTATCGT-----CTTTGTATTTGACATAGACCCACGTCATATATTTA------AATGAGGCTGATGCGCCGCAAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGCG-ACTGAAA---001?40151201100012 Rhamnus_glandulosa ----------------------------------------------------------AACGGTTCAAAATTCGTTATGTTTCTC-------ATTCATTCTACTCTTTTAGTTTACAAATGGTAATGGTCTGAGCGGAAATTTTTTTCTTTTCACATTCACAAGCCTTGT--------------GATATATAGGATACACGTACAAATGAACATCGTTGGGCACGTAACCCTGATTGTAAATTGTAATGATTAACAATACATAGTATT--------------ACTTGTACTGTACTGAAACTTACAAAGTCTTCTTTTT----------GAAGAT-CCAAGAA---ATTCCACCAAGACCCGG----ATAAGGCTTTGTAATC----CCC-TTTTCGT-----CTTTTTCATTGACATAGAACCAAGTCCTCTATTAA------AATGAGGATGGTGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC----------------??10T0T6111110?00? Rhamnus_lycioides CAAAAAGTCCCATTG-GATTCCCTAATTATTTATCCTATGCTC-----TCATTTCGTTAACGGTTCAAAATTCGTTATGTTTCTC-------ATTCATTCTACTCTTTTAGTTTACAAATGGTAATGGTCTGAGCGGAAATTTTTTTATTTTCACA------AGCCTTGTGATATTGT------GATATATAGGATACACGTACAAATGAACATCGTTGGGCACGTAACCCTGATTGTAAATTGTAATGATTAACAATACATATTCTT--------------ACTTGTATTGTACTGAAACGTACAAAGTCTTCTTTTT----------GAAGAT-CCAAGAA---ATTCCACCAAGACCTGG----ATAAGGCTTTGTAATC----CCC-TTTTCGT-----CTTTTTCATTGACATAGAACCAAGTCCTCTATTAA------AATGAGGATGGTGCGTCGTGAATGGTCGGGATAGCTCAGCTGGT---------------------001020T6111110?00? Siegfriedia_darwinioides CAAAAAGGCCCAGTT-GATTCCCTAATTTTTTATCGTATACTC-----TCATTTCGTTATGGGTTCAAAATTCATTATCTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GGTATATATGATACACATACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCCCGTACTGTACTGAAACTTACAAAGTCTT???????----------AAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAACACTTTGTAATC-----CC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGCCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAGGACTGAATA--0010T2T81211100010 Spyridium_globulosum CAAAAAGGCCCAGTT-GATTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTATCGGTTCAAAGTTCATTATGTTTCTC-------ATTCATT---------------------------------------CATTTTTTTCTTTTCACA------AGCCTTGT--------------GGTATATATGATACACATACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCCCGTACTGTACTGAAACTTACAAAGTCTT???????----------AAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAACACTTTGTAATC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGA------------------0010T2T8111110?01? Trichocephalus_stipularis CA------CCCATTT-GATTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCCTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTAATTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCCCGTACTGTATTGAAACTTACAAAGTCTTCTTTTT----------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC-----CTCTTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATTTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAG-AC--------2010T2T61201100012 Trymalium_ledifolium CAAAAAGGCCCAGTT-GATTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTATCGGTTCAAAATTCATTATCTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GGTATATATGATACACATACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCCCGTACTGTACTGAAACTTACAAAGTCTT???????----------AAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAACACTTTGTAATC-----CC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTAATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AG-GGATGAA-----0010T2T81211101010 Ventilago_viminalis --------------------------------ATCCTATGCTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATTTTACTTTTTTACTTTACAAATGG-TTTGAGCGGA-----AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATAGGATACACGTACAAATAAACATCGTTGAGCACGTAACAACGATT?-AAAATGTAATGATTAACAATACATATTATT---------TTATTACTCGTACTGTACTAAAACTTACAAAGTCTTCTTTTT----------GAAGATTCCAAGAA---ATTCCACCAAGGCCCGG----ATAAGACTTTGTAATCGCCCCCC-TTTTCGT-----CTTTTTAATTGACATAGAACCATGTCCTCTATTAA------AATGAGTCTGGTGCGTCGTGAATGGTCGGGATAGCTCAG-TG-TAGAGC-??---ACTGAA----??10T026101111004? Ziziphus_acidojujuba_05 CAAAAAGGCCC{AC}TTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTATTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGAAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTATTTTTTTTTTTT---GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCG-----------------------------------------------0110T2T111111??01? Ziziphus_acidojujuba_06 CAAAAAGGCCC{AC}TTT-G{AG}TTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTATTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGAAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTATTTTTTTTTTTT---GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCG-GAATGGACGGG-----------------------------------0110T2T111111??01? Ziziphus_amole CAAAAAGGCCCATTT-GGTTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTAAAACGTACAAAGTCTTCTTTTT----------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGTTTCGTCTTTTTAATTGACATAGACCCAAGTTATCTATTAA------AATGAGGATGATGCGTCGTGGATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAGGACTGAAAATC0010T2T61110100010 Ziziphus_calophylla CAAAAAAGCCCATTT-GATTCCCTAATTGTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AACCTTGT--------------GGTATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTTT------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCG{GT}GAATAGTCGGGATAGCTCAGCTGGTAGAGC-A{AG}AGGACTGAAAATC0110T2T41111100010 Ziziphus_celata_01 CAAAAAGTCCTATTG-GATTCCCTAATTATTTATCCTATGCTC-----TCAGTTCGTTAACGGTTCAAAATTCGTTATGTTTCTC-------ATTCATTCTACTCTTGTACTTTACA-----?TCTGAGCGGA-----AATTTTTTTCTTTTCACA------AGCCTTGTGATATTGT------GATGTATAGGATACACGTACAAATGAACATCGTTGGGCACGTAACCCCGATTGTAAATTGTAATGATTAACAATACATATTATT--------------ACTTGTACTGTACTGAAACTTACAAAGTCTTATTTTT----------GAAGAT-CCAAGAA---ATTCCACCAAGACCTGG----ATAAGGCTTTGTAATC----CCC-TTTTCGT-----CTTTTTCATTGACATAGAACCAAGTCCTCTATTAA------AATGAGGATGGTGTGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAGGACTGAAAATC001020T61111100020 Ziziphus_celata_02 CAAAAAGTCCTATTG-GATTCCCTAATTATTTATCCTATGCTC-----TCAGTTCGTTAACGGTTCAAAATTCGTTATGTTTCTC-------ATTCATTCTACTCTTGTACTTTACA-----?TCTGAGCGGA-----AATTTTTTTCTTTTCACA------AGCCTTGTGATATTGT------GATGTATAGGATACACGTACAAATGAACATCGTTGGGCACGTAACCCCGATTGTAAATTGTAATGATTAACAATACATATTATT--------------ACTTGTACTGTACTGAAACTTACAAAGTCTTATTTTT----------GAAGAT-CCAAGAA---ATTCCACCAAGACCTGG----ATAAGGCTTTGTAATC----CCC-TTTTCGT-----CTTTTTCATTGACATAGAACCAAGTCCTCTATTAA------AATGAGGATGGTGTGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAGGACTGAAAATC001020T61111100020 Ziziphus_glabrata CAAAAAGGCCCATTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTTT--------------GATATATACGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTTTT-----GAAGAG-CTAAGAA---ATACCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCG{GT}GAA{GT}GG{CT}CGGGATAGCTCA---------------------------0110T2TT11111??01? Ziziphus_glabratagen CAAAAAGGCCCATTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTTT--------------GATATATACGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTTTT-----GAAGAG-CTAAGAA---ATACCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGT---------------------0110T2TT111110?01? Ziziphus_guatemalensis_12 CAAAAAGGCCCATTT-GGTTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTAAAACGTACAAAGTCTTCTTTTT----------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGTTTCGTCTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-A{AG}AGGACTGAAAATC0010T2T61110100010 Ziziphus_guatemalensis_14 CAAAAAGGCCCATTT-GGTTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTAAAACGTACAAAGTCTTCTTTTT----------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGTTTCGTCTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAGGACTGAAAATC0010T2T61110100010 Ziziphus_horsfieldii CAAAAAGGCCCATTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTTTT-----GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCCATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAG-------------------------------0110T2TT11111??01? Ziziphus_jujuba_DBG682201016 ------------------TTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTATTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGAAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTATTTTTTTTTTTT---GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCG{CT}CGGGAAGGG{CT}CGGGA{AT}A{CG}C{CT}CA{CG}C{GT}GG----------------------?110T2T1111110?01? Ziziphus_jujuba_UCBGE57170001 CAAAAAGGCCC{AC}TTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTATTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGAAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTATTTTTTTTTTT----GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAG-------------------------------0110T2T211111??01? Ziziphus_jujuba_USNA_MA48915 CAAAAAGGCCC{AC}TTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTATTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGAAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTATTTTTTTTTTTT---GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------??---------------------------------------------------------------0110T2T11111???01? Ziziphus_jujuba_USNA_NA65890 CAAAAAGGCCC{AC}TTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTATTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGAAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTATTTTTTTTTTTT---GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGA----------------------------------0110T2T111111??01? Ziziphus_jujuba_USNA_NA9622 CAAAAAGGCCC{AC}TTT-G{AG}TTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTATTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGAAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTATTTTTTTTTTTT---GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAG-------------------------------0110T2T111111??01? Ziziphus_jujuba_ZhaoJin_s.n. CAAAAAGGCCC{AC}TTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTATTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGAAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTATTTTTTTTTTT----GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGC---------------------------------------------------0110T2T211111??01? Ziziphus_lotus CAAAAAGGCCCATTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGTGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTTTTTT---GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTACTC-----CC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGT-------------------------0110T2T112111??01? Ziziphus_mauritiana_02 CAAAAAGGCCCATTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTTT--------------GATATATACGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTTTT-----GAAGAG-CTAAGAA---ATACCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCA{CG}CTGGTA{AG}AGC-A{AG}AGGACTGAAAATC0110T2TT1111100010 Ziziphus_mauritiana_12 CAAAAAGGCCCATTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTTT--------------GATATATACGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTTTT-----GAAGAG-CTAAGAA---ATACCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCG{CT}CG{GT}GAA{GT}GG{CT}CGGGATAGCTCA{CG}CTGGTA{AG}AGC-A{AG}AGGACTGAAAATC0110T2TT1111100010 Ziziphus_mauritiana_16 CAAAAAGGCCCATTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTTT--------------GATATATACGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTTTT-----GAAGAG-CTAAGAA---ATACCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCG{GT}GAA{GT}GG{CT}CGGGATAGCTCAGCTGGTA{AG}AGC-A{AG}AGGACTGAAAATC0110T2TT1111100010 Ziziphus_mistol_13 CA{AC}AAAGGCCCATTT-GGTTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AACCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTAAAACGTACAAAGTCTTCTTTTT----------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGTTTCGTCTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAGGACTGAAAATC0010T2T61110100010 Ziziphus_mistol_30 CAAAAAGGCCCATTT-GGTTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AACCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTAAAACGTACAAAGTCTTCTTTTT----------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGTTTCGTCTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAGGACTGAAAATC0010T2T61110100010 Ziziphus_mucronata_15 CAAAAAGACCC{AC}TTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTTGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGAAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTGACAAAGTCTTCTTTTTTTTTTT----GAAGAT-CTAAGAA---ATTCCACCAAGGTCTGG----ATAAGACTTTGTACTT----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGTGTCGTGAATGGTCGGG-----------------------------------0110T2T211111??01? Ziziphus_mucronata_20 CAAAAAG{AG}CCGATTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTTGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAAAAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTGACAAAGTCTTCTTTTTTTTTTT----GAAGAT-CTAAGAA---ATTCCACCAAGGTCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGG-----------------------------------0110T2T211111??01? Ziziphus_obtusifolia_var._canescens CAAAAAGTCCCATTT-GGTTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACATGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTC??????-----AAACGTACAAAGTCTTCTTTTT----------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGTTTCGTCTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAGGACTGAAAATC0010T2T61110100110 Ziziphus_obtusifolia_var._obtusifolia_14 --------------------------TTTTTTATCCTATACTC-----TCA{GT}TT{CG}GTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACATGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTC??????-----AAACGTACAAAGTCTTCTTTTT----------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGTTTCGTCTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAGGACTGAAAATC?010T2T61110100110 Ziziphus_obtusifolia_var._obtusifolia_19 CAAAAAGTCCCATTT-GGTTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACATGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTC??????-----AAACGTACAAAGTCTTCTTTTT----------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGTTTCGTCTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAGGACTGAAAATC0010T2T61110100110 Ziziphus_oenopolia_Astuti_s.n. CAAAAAAGCCCATTT-GATTCCCTAATTGTT-ATCCTATACTC-----TCATCTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AACCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------GATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCGTTTTTTTTT-----GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-A{AG}AGGACTGAAAATC0110T2TT1111100010 Ziziphus_ornata CAAAAAAGCCCATTT-GATTCCCTAATTGTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AACCTTGT--------------GGTATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTTT------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATAGTCGGG-TAGCTCAGCTGGTAGAGC-AGAGGACTG------0110T2T41111100010 Ziziphus_pubescens_11 CAAAAAAGCCCCTTG-GATTACCTAATTATTTATCCTATACGC-----TCATTTCGTTAGCGATTCAAAATTCGTTATGGTTCGC-------ATTCATTCTACTCT???-----??AAATGGATCTGAGCGTA-----AA-----TTCTTTTCACA------AGCCTTTT--------------GATATATACGATACACGTACAAATGAACATCGTTGAGCAAGTAACTCCGATTGTAAATTGGAATGATTAACAATACATATTATT--------------ACTCGGACTGTACTGAATCTTACAAAGTCTTCTTTTT----------GAAGAT-CCAAGAA---ATTCCACCAAAGCCTGGCTGGATAAGACTTTGTAATT----CCC-TTTTCGT-----CTTTTTAATTGACGGAGACCCAAGTCATCTATTAAAATAAAAATCAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAGGACTGAAAATC0012T0T601110000T0 Ziziphus_pubescens_12 CAAAAAAGCCCCTTG-GATTACCTAATTATTTATCCTATACGC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGGTTCGC-------ATTCATTCTACTCT???-----??AAATGGATCTGAGCGTA-----AA-----TTCTTTTCACA------AGCCTTTT--------------GATATATACGATACACGTACAAATGAACATCGTTGAGCAAGTAACTCCGATTGTAAATTGGAATGATTAACAATACATATTATT--------------ACTCGGACTGTACTGAATCTTACAAAGTCTTCTTTTT----------GAAGAT-CCAAGAA---ATTCCACCAAAGCCTGGCTGGATAAGACTTTGTAATT----CCC-TTTTCGT-----CTTTTTAATTGACGGAGACCCAAGTCATCTATTAAAATAAAAATCAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAGGACTGAAAATC0012T0T601110000T0 Ziziphus_rugosa CAAAAAGGCCCATTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAACGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGATCAT??-TTCATATTATC--------------GCTCGTACTGTACTGAAACTTCCAAAGTCTTCTTTTTTTTTT-----GAAGAT-CTAAGAA---ATTCCACCAAGGCCCGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATA{AG}ACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCG{GT}GAA{GT}GG{CT}CGGGATAGCTCA{CG}CTGGTA{AG}AGC-A{AG}AGGACTGAAAATC0110T1TT1111100010 Ziziphus_spinachristi_13 CAAAAAGGCCCATTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTTT--------------GATATATACGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTTTT-----GAAGAG-CTAAGAA---ATACCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCA{CG}CTGGTA{AG}AGC-A{AG}AGGACTGAAAATC0110T2TT1111100010 Ziziphus_spinachristi_14 CAAAAAGGCCCATTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTTT--------------GATATATACGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTTTT-----GAAGAG-CTAAGAA---ATACCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-A--------------0110T2TT111110?01? Ziziphus_spinachristi_15 ------------TTT-GATTCCCTAATTTTT-ATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTTT--------------GATATATACGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTGAAACTTACAAAGTCTTCTTTTTTTTTT-----GAAGAG-CTAAGAA---ATACCACCAAGGCCTGG----ATAAGACTTTGTACTC----CCC-TTTTCGT-----CTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGC------------------------------?110T2TT11111??01? Ziziphus_taylori CAAAAAGGCCCATTT-GGTTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTT-------------------------------------------------------------------TGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTAAAACGTACAAAGTCTTCTTTTT----------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGTTTCGTCTTTTTAATTGACATAGACCCAAGTTATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAGGACTGAAAATC001052T61110100010 Ziziphus_thyrsiflora CAAAAAGGCCCATTT-GGTTCCCTAATTTTTTATCCTATACTC-----TCATTTCGTTAGCGGTTCAAAATTCGTTATGTTTCTC-------ATTCATT---------------------------------------AATTTTTTTCTTTTCACA------AGCCTTGT--------------GATATATATGATACACGTACAAATGAACATCATTGAGCAAGTAACCCCGATTGTAAATTGGAATGAT--------CATATTATC--------------GCTCGTACTGTACTAAAACGTACAAAGTCTTCTTTTT----------GAAGAT-CTAAGAA---ATTCCACCAAGGCCTGG----ATAAGACTTTGTAATC----CCC-TTTTCGTTTCGTCTTTTTAATTGACATAGACCCAAGTCATCTATTAA------AATGAGGATGATGCGTCGTGAATGGTCGGGATAGCTCAGCTGGTAGAGC-AGAGGACTGAAAATC0010T2T61110100010 ; END; [ The following blocks are output data for analysis step 4822 ] BEGIN TREES; TITLE Tb9597; LINK TAXA = TaxaForAnalysisStep4822; TREE Fig._2 = [&R] (Condalia_microphylla,(((((((((Ziziphus_acidojujuba_05,Ziziphus_acidojujuba_06,Ziziphus_jujuba_USNA_MA48915,Ziziphus_jujuba_USNA_NA65890,Ziziphus_jujuba_USNA_NA9622,Ziziphus_jujuba_DBG682201016,Ziziphus_jujuba_UCBGE57170001,Ziziphus_jujuba_ZhaoJin_s.n.),(Ziziphus_mucronata_15,Ziziphus_mucronata_20)),((Ziziphus_calophylla,Ziziphus_ornata),Ziziphus_oenopolia_Astuti_s.n.),(Ziziphus_glabrata,Ziziphus_mauritiana_02,Ziziphus_mauritiana_12,Ziziphus_mauritiana_16,Ziziphus_spinachristi_13,Ziziphus_spinachristi_14,Ziziphus_spinachristi_15,Ziziphus_glabratagen),Ziziphus_horsfieldii,Ziziphus_lotus,Ziziphus_rugosa,(Paliurus_hemsleyanus_03,Paliurus_hemsleyanus_04),(Paliurus_ramosissimus_06,Paliurus_ramosissimus_07),Paliurus_spinachristi),((Hovenia_dulcis_USNA24752,Hovenia_dulcis_Chase968),Hovenia_dulcis_Goodwin619814,Hovenia_trichocarpa)),((Ziziphus_amole,Ziziphus_taylori),Ziziphus_guatemalensis_12,Ziziphus_guatemalensis_14,(Ziziphus_mistol_13,Ziziphus_mistol_30),(Ziziphus_obtusifolia_var._obtusifolia_14,Ziziphus_obtusifolia_var._canescens,Ziziphus_obtusifolia_var._obtusifolia_19),Ziziphus_thyrsiflora),(Colubrina_asiatica,Colubrina_reclinata),(((Pomaderris_rugosa,Siegfriedia_darwinioides),Trymalium_ledifolium),Spyridium_globulosum,Cryptandra_cf._spyridioides),Alphitonia_aff._incana,Lasiodiscus_mildbraedii,((Trichocephalus_stipularis,Nesiota_elliptica),(Phylica_polifolia,Phylica_pubescens,Phylica_nitida),Noltea_africana),Ceanothus_coeruleus),Reissekia_smilacina),(((Ziziphus_pubescens_11,Ziziphus_pubescens_12),(Doerpfeldia_cubensis,Ampelozizyphus_amazonicus)),Bathiorhamnus_cryptophorus)),Ventilago_viminalis),(Rhamnus_glandulosa,Rhamnus_lycioides)),(Ziziphus_celata_01,Ziziphus_celata_02)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4636] END;