#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 19, 2025; 13:30 GMT

TreeBASE (cc) 1994-2008

Study reference:
Islam M., & Simmons M. 2006. A Thorny Dilemma: Testing Alternative Intrageneric Classifications
within Ziziphus (Rhamnaceae). Systematic Botany, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S2373]

[ The following blocks are input data for analysis step 4825 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep4825;
        DIMENSIONS NTAX=30;
        TAXLABELS
            Colubrina_asiatica
            Condalia_microphylla
            Hovenia_dulcis
            Hovenia_trichocarpa
            Paliurus_hemsleyanus
            Paliurus_ramosissimus
            Paliurus_spinachristi
            Pomaderris_rugosa
            Reissekia_smilacina
            Ventilago_maderaspatana
            Ziziphus_acidojujuba
            Ziziphus_amole
            Ziziphus_calophylla
            Ziziphus_celata
            Ziziphus_glabrata
            Ziziphus_guatemalensis
            Ziziphus_horsfieldii
            Ziziphus_jujuba
            Ziziphus_lotus
            Ziziphus_mauritiana
            Ziziphus_mistol
            Ziziphus_mucronata
            Ziziphus_obtusifolia_var._canescens
            Ziziphus_obtusifolia_var._obtusifolia
            Ziziphus_oenopolia
            Ziziphus_pubescens
            Ziziphus_rugosa
            Ziziphus_spinachristi
            Ziziphus_taylori
            Ziziphus_thyrsiflora
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3476]

	TITLE Morphology;
	LINK TAXA = TaxaForAnalysisStep4825;
	DIMENSIONS NCHAR=27;
	FORMAT DATATYPE=Standard SYMBOLS= "A C G T 4 5 6 7 8 9 B D E F H J K L M N P Q R 0 1 2" MISSING=? GAP= -;

MATRIX
[                                                 10        20        30        40     ]
[                                                  .         .         .         .     ]
Colubrina_asiatica                        01T?100?1??1?1??1???1-11???
Condalia_microphylla                      11T0022?0--0000{01}01??1-11011
Hovenia_dulcis                            1{01}T110100--111{01}111001-11???
Hovenia_trichocarpa                       1{01}{12}020T00--111{01}010??1-11???
Paliurus_hemsleyanus                      10T12{01}2111011101011000?1???
Paliurus_ramosissimus                     10202{42}00110111{01}000100010???
Paliurus_spinachristi                     10T1120011{01}11{01}0111100010101
Pomaderris_rugosa                         111?0???0--0-11??0??1-?????
Reissekia_smilacina                       1????????????0{01}?1???0-?????
Ventilago_maderaspatana                   01{T1}0{01}{02}{02}{01}0--1?11001??0110???
Ziziphus_acidojujuba                      10T1240011{01}100?101??1-1????
Ziziphus_amole                            10{T0}10{12}000--001{01}001001-11010
Ziziphus_calophylla                       00T01000101110{01}000001-11???
Ziziphus_celata                           11T00{T2}200--00001{01}1001-21???
Ziziphus_glabrata                         10T121{01}10--110{01}001011-{T1}1011
Ziziphus_guatemalensis                    10T12{12}000--0110001001-{12}1010
Ziziphus_horsfieldii                      0020{12}001101111???0??1-1????
Ziziphus_jujuba                           10T1222{01}11{01}1000101111-{40}1101
Ziziphus_lotus                            10T1222111{01}1000101011-11101
Ziziphus_mauritiana                       1010{01}2{02}01{01}{01}1100001111-{01}1101
Ziziphus_mistol                           10{12}012{01}00--001{01}00{01}001-01010
Ziziphus_mucronata                        10{T2}11{01}0111{01}101{01}{01}01111-11101
Ziziphus_obtusifolia_var._canescens       1{01}{T0}10{12}000--001{01}{01}0{01}001-11???
Ziziphus_obtusifolia_var._obtusifolia     1{01}{T0}10{42}{02}00--001{01}001011-11011
Ziziphus_oenopolia                        00100{01}21101111{01}001111-11101
Ziziphus_pubescens                        10{01}110000--110{01}001001-11011
Ziziphus_rugosa                           10{12}01{12}{01}{01}101111{01}000001-{T1}1101
Ziziphus_spinachristi                     10{T2}12{T2}0011{01}1110001001-11101
Ziziphus_taylori                          11T004200--010{01}101011-11???
Ziziphus_thyrsiflora                      10{T2}022{01}00--111{01}{01}0{01}001-{T0}1010
;
END;

[ The following blocks are output data for analysis step 4825 ]
BEGIN TREES;
      TITLE Tb9600;
      LINK TAXA = TaxaForAnalysisStep4825;
      TREE Fig._5 = [&R] (Condalia_microphylla,(Ziziphus_acidojujuba,Ziziphus_jujuba,Ziziphus_amole,Ziziphus_calophylla,Ziziphus_glabrata,Ziziphus_guatemalensis,Ziziphus_horsfieldii,Ziziphus_lotus,Ziziphus_mauritiana,Ziziphus_mistol,Ziziphus_mucronata,Ziziphus_obtusifolia_var._obtusifolia,Ziziphus_obtusifolia_var._canescens,Ziziphus_oenopolia,Ziziphus_pubescens,Ziziphus_rugosa,Ziziphus_spinachristi,Ziziphus_thyrsiflora,Paliurus_hemsleyanus,Paliurus_ramosissimus,Paliurus_spinachristi,Hovenia_dulcis,Hovenia_trichocarpa,Colubrina_asiatica,Reissekia_smilacina,Pomaderris_rugosa,Ventilago_maderaspatana),Ziziphus_celata,Ziziphus_taylori);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4638]


END;