#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 08, 2024; 15:04 GMT TreeBASE (cc) 1994-2008 Study reference: Morgan D., Korn R., & Mugleston S. 2009. Insights into reticulate evolution in Machaerantherinae (Asteraceae: Astereae): 5S ribosomal RNA spacer variation, estimating support for incongruence, and constructing reticulate phylogenies. American Journal of Botany, 96: 920-932. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S9935] [ The following blocks are input data for analysis step 4889 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4889; DIMENSIONS NTAX=34; TAXLABELS Arida_blepharophylla Arida_parviflora Arida_riparia Arida_turneri Corethrogyne_filaginifolia Dieteria_bigelovii Dieteria_canescens Grindelia_ciliata Haplopappus_glutinosus Hazardia_squarrosa Herrickia_kingii Isocoma_veneta Lessingia_glandulifera Machaeranthera_tanacetifolia Oonopsis_engelmannii Oonopsis_wardii Psilactis_brevilingulata Pyrrocoma_crocea Pyrrocoma_lanceolata Rayjacksonia_phyllocephala Symphyotrichum_drummondii Xanthisma_blephariphylla Xanthisma_coloradoense Xanthisma_crutchfieldii Xanthisma_gracile Xanthisma_grindelioides Xanthisma_gymnocephalum Xanthisma_rhizomatum Xanthisma_spinulosum Xanthisma_stenolobum Xanthisma_texanum Xanthisma_viscidum Xanthocephalum_gymnospermoides Xylorhiza_wrightii ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M4706] TITLE 5S_dataset_2; LINK TAXA = TaxaForAnalysisStep4889; DIMENSIONS NCHAR=213; FORMAT DATATYPE=Standard SYMBOLS= "A C G T 0 1 2 3" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Arida_blepharophylla TGTCG{CT}A{CG}{AG}CGCTCG{CT}GAAAGTCGGGGAAACGAGAA{AT}{AT}-GCAG{AG}AGACTGACGGGCGCGGGGAGTGACCGGG{AG}CGGA{AG}TAAG{AT}A{ACT}{GT}T{CT}GAAG{AG}GGTTA{CT}-C{AG}GGTTG{AG}AAGGAGCCCG{CG}GAGGCGACATA{AC}G{AG}GTGAACAAAAGGGGG-{AC}GGGGACTTC{CT}TGGGGTAAGGGATAAAAGAATTAA{AC}{AC}AG{AC}GGATGT{AG}TTTCGGTTGCG110110 Arida_parviflora TGTCGCAGG{AC}GCTCGCGAAAGTCGAGGAAACGAGAAAA-GAAAAAGACTGACGGGCGCGGGGAGTGACCGGGACGAAGTAAGACGTCCGGAGCGGTTAC-CGGTTTGAAACGAGCCTGTGAGGCGACATACGGGTGAACAAAAGTAGG-AGGGAACTTCCTGGGGTGAGGGATAAAAGAATTAAACAGAGGATGTATTTCGGTTGCG110110 Arida_riparia --------GCGCTCGCGGAAGCCGTGGAAACGAGAAAA-GCAAA{AG}GACTGACGGGCGCGGGGAGTGAGCGGGTCGAAGTAAGACGTCCGGAGAGGTTAC-G{AG}GCTTGAAACG{AG}GCCCGTGAGGCGACATACGGGTGAACAAAAGGAGG-AGGGAACTTCCTGGGGTAAGGGATAAAAGGATTAAACAGAGGATGTATTTCGGTTGCG110110 Arida_turneri TGTCGCAGGCGTTCGCGAAAGTCGTGGAAACGAGAAAA-GAAAAAGACTGACGGGCGCGGGGAGTGACCGGGTCGAAGTAAGACGTCCGGAGCGGTTAC-CGGTTTGAAACGAGCCC{AG}TGAGGCGACATACGGGTGAACAAAAGTAGG-AGGGAACTTCCTGGGGTGAGGGATAAAAGAATTAAACAGAGGATGTATTTCGGTTGCG110110 Corethrogyne_filaginifolia -----------------------------------------------------------------------------------------------TTGC-GG{AG}GTTGAAACGGGCGCGTGAGACGGCGTACGGGTGAGCAAACGGATG-AGGGAACTTCCTGGGTTGA{GT}GGATAAAAGAATTAAAC{AG}AAGGA{CT}GTATTTCGGTTGCG110110 Dieteria_bigelovii TGTCGC{AG}GGCGCTCGCGAAAGTCGTGGAAACGAGAAAA-GAAGAAGACTGACGGGCGCGGGGAGTGACCGGGACGAAGTAAGACGTTCGGAGAGGTTAC-CGGCTTGAAACG---------GGGGACA{CT}ACGGGTGAACAAAAGGGGG-A-GGGGCTTCCTGGGGAAAGGGATAAAAGAATTAAGC{AG}GAGGAT{AG}TATTTCGGTTGCG110100 Dieteria_canescens TGTCGCAGGCGCTCGCGAAA{GT}TCGTGGAAACGAGAAAA-GAAGAAGACTG{AG}CGGGCGCGGGGAGTGACCGGGACGAAGTAAGACGTTCGGAGAGGTTAC-CGGCTT{AG}AAACG---------GGCGACATACGGGTGAACAAAAGGGGG-A{GT}GGGGCTTCCTGGGGAAAGGGATAAAAGA{AG}TTAAGCAGAGGATGTATTTCGGTTGCG110100 Grindelia_ciliata -------------------------------------------------AA-AGGCGGGGTGAGCGACCGGGACGTAGTAGGACGTTCGGAGAGGTTAC-GGGGCTGAAACGAGCGCGTGGGGCGA{CG}GTACGGGTGAACAAATGGATG-GGGGAACTTCCTGGGGTAAGGGTTAAAAGCATTAAACGAAGGATGTATTTCGGTTGCG110110 Haplopappus_glutinosus CGTCGCAGGCGCTCGCGGAAGTCTGGGAGACTAGAAAC-GCCAAA{GT}AC{AG}GACGGC{CG}GCG{CGT}GT{AG}GCGACCGGGACGAAG{GT}{AC}AGACGTTCGGAGAGGTTGC-GGGGTTGAAACGAGCCCGTGAGGCG{AT}CGTACGGGTGAACAAATGGATG-AGGGAACTTCCTGGGTTT{AT}GGGATAAAAGAA{CT}TAAACGAAGGATGTCTTTCGGTTGCG110110 Hazardia_squarrosa CG{AC}CGCAGGCGCT{CT}GCGGAAG{CT}CTGGGAGACGAGAAAA-GCCAAAGACGGACGGGCGCG{GT}GGAGCGACCGGGA{CT}GAAGTAAGACGTTCGGAGGGGTTAC-GGGGTTGAAACGAGCCCGTGAGGCGACGTACGGGTGAACAAA{CT}GGATG-{AG}GGGAACTTCCTGGGTT{AG}AGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGCG110110 Herrickia_kingii -------GGCGCTCGCGAAATCCGGGGAAATGGGAAAA-GCAAGAGACGGACGGGCGCGTGGAGTGACCGAGACGAAGCAAGACGTTCGGAGAGGATAC-CGGGTTGAAACGAGCCCGTGAGGCGACATACGAGTGAACAAATGGAGG-AGGGAACTTCATGGGTGAAGGGATAAAAGAATTAAACAATGGATGAATTTTGGTTGCG110110 Isocoma_veneta CGTCGCAGGCGCTCGCGGAAGTCCTGGAGACGAGAAAA-GCAAAAGACGGACGGGCGCGGGGAGGTACCGGGACGAAGTAGGACGTTCGGAGAGGTTAC-GGG-CTG{AT}AACGAGCGCGTGGGGCGACGTACGGGTGAACAAATGGATG-GGGGAACCTCCTGGGAAAAGGGTTAAAAGCATTAAACGAAGGATGTATTTCGGTTGCG110010 Lessingia_glandulifera -----------------------------------------------------------------------------------------------TTGC-GGGGCTAAAACGTGACCGCGAGA{CT}GACGTACGGGTGAGCAAATGGATG-AGGG{AG}A{CG}T{CT}C{CG}TGGGTTGA{GT}GG{AC}TAAAAGAATTAA{AG}CGAAGGA{CT}GTATTT{CT}GGTTGCG110110 Machaeranthera_tanacetifolia CGTCGCAGGCGGTCGCGGAAGTGC{AG}GGAAAGGAGAGAA-GCAAAAGACGGACGGGCGCGGGGAGCTCC-GGGAA{GT}AAGTAAGACGTTCGGAGCGGTTGT-CGGGTTGAAACGAGCCCGTGACGCGACGTACAGGTGAACAAATGGATG-AG{GT}AAACTTCCTGGGGTAAGGGATAAAAGAATTAAACAAAGAATGTATTTCGGTTGCG100110 Oonopsis_engelmannii CGACGCAGGCGCGCGCGGAAGTGTGGGAAACGAGAGAA-GCGAAAGACGGACGGGCGCGGGGAGCTTC-GGGGAGAAGTAAGACGTCCGGAGAGGTTGC-CGGGTTGAAACGAGCCCGTGAGGCGACGTACGGGTGAACAAATGGATGGAGGGAAGTTCATGGGGTAAGGGATAAAAGAATTAAACAAAGGATGTATTTCGGTTGCG100111 Oonopsis_wardii {AC}GACGCAGGCGCGCGCGGAAGTG{CT}GGGAAACGAGAGGA-GCAAAAGACGGAC{AG}{AG}GCGCGGGGAG{AC}TTC-GGGAAGA{AG}GTAAGAC{AG}T{CT}CGGAGAGGT{CT}G{CT}-CGGGTTGAAACGAGCCCGTGAGGCGACGTACGGGTGAACAAATGGATGGAGG{AG}AAGTTCATGGGGTAAGGGATAAAAGAATT{AT}AACAAAGGATGTATTTCGGTTGCG100111 Psilactis_brevilingulata -------GGCGCTCGCGAAAGTCGGGGAAACGAGAAAA-GCAAAAGACGGGCGGGCGGGGGGAGTGACTGGGGTGAAGTAAGACGTTCGGAGAGGATAC-CGGGCTGAAACGAGCCAGTGAGGCGGCATACGGGTGAACAAATGGAGG-AGGGAAGTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGCG110110 Pyrrocoma_crocea CG{GT}CG{CG}CGGCG{AC}TCGCGGAAG{CT}C{AC}GGGAGACGAGAAAAA{CG}CAAAAG{AT}{CG}GGGCGGGCGCGGGGAGCGACCGGGACGAAGTA{AC}GACGTTCGGAGAGG{CT}TAC-GGGG{CT}TGAAACGGGCCCGT{CG}AGGCGACGTACGGGTGAACAAATGGATG-AGGGGACTTCCTGGGGTAAGGGATAAAAG{AG}ATTAA{AG}CGAGGGATGTATTT{AC}GGTTGCG111110 Pyrrocoma_lanceolata CGG{CG}G{GT}CGG{CG}GCTCGCGGAA{GT}{CG}CAGGGGGA{AC}GAGAAAAAGCAAAAG{AT}CGGACGGCCGCGGGGAGCGA{AC}CGGGACGAA{GT}TAAGACGTT{CT}GGAGAGGCTAC-GGGGC{AT}GAAACGGGCCCGTGAGGCGACGTACGG{AG}TGAACAAATGGATG-AGGGAACTTCC{CT}GGGGTAAGGGATAAAAGGATTAAACGAGGGATGTATTT{AC}GGTTGCG111110 Rayjacksonia_phyllocephala --------------GCGGAAGTCCGGGAGACGAGAAAA-GCAAAAGACGGACGGGCGCGGGGAGGTACGGGGACGAAGGAGGACGTTCGGAGAGGTTAC-GGG-CTGAAACGAGGGCGTGGGGCGACGTACGGGTGAACAAATGGATG-GGGGAACTTCCTGGGGAAAGGGTTAAAAGCATTAAACGAAGGATGTATTTCGGTTGCG110010 Symphyotrichum_drummondii -------G-CGCTCGCGAAAGTCTGGGAAACGAGAAAA-GCAAAAGACGGACGGGCGCGGGTAGTGACCGGGATGAAGTAATACGTTCGGAGAGGATAC-CGGGTTGAAACGAGCCAGTGAGGCGACATACGGGTGAACAAGTGGAGG-AGGGAGCTTCCTGGGGTAAGGGATAAAAGAATTAAACGAAGGATGTATTTCGGTTGCG110110 Xanthisma_blephariphylla -----------------------------------------------------------GGGAGCGACGGGGACGAAGTAAGACGTTCGGAGAGGTTGC-CGGGT{CT}GAAACGGGCCCGTGAGGCGACGTACGGGTGA{AG}C{AG}G{AG}TGGACG-AGG{AG}AACTTCCTGGGATAAGGGATAAAAGAATAAAACAAAG{CG}A{GT}GTATTTCGGTTGCG110110 Xanthisma_coloradoense -----------------------------------------------------------GG{CG}AGCGACCGGGACGAAGTAAGACGTTCGGAGAGGTT{AG}C-CGGGTTGAAAC{CG}GGCCCGT{AG}AGGCGACGTACGGGTGAACGGATGGACG-AGGGAACTTCCTGGGATAAGGGATAAAAG{AG}ATAAAACAAAGGATGTATTTCGGTTGCG110110 Xanthisma_crutchfieldii CGTCG{CT}AGGCGCTCCCGGAAGTCTGGGAAACGAGAGA{AG}-GCAAAAGACGGACGGCCGCGGGGAGCGACCGGGACGAAGTAAGACGTTCGGAGAGGTTGC-CGGGTTGAAACGGGCCCGTGAGGCGACGTACGGGTGAACGGATGGACG-AGGGAACTTCC{CT}GGGGTAAGG{GT}ATAAAA{GT}AATAAAACAAA{AG}GATGTATTTCGGTTGCG110110 Xanthisma_gracile CG{CT}CGCGG{AG}CCCTCGCGGAAGTCCGGGAAAGGAGAGAA-GCAGAAGGC{GT}GACG----------------------AAGTAAGACGTTCGGGGCGGTTTTACGGGTTGAAACGAGCCCGTGAGGCGACGTACGGGTGAACAAATG{CG}ACG-AGGGAACGTCCTGGGGTAAGGGATAAAAGA{AG}TTAAACAAAGGGTGTATTTCGGTTGCG010110 Xanthisma_grindelioides -----------------------------------------------------------GGGA{AG}{CG}GACCGGGACGAAGTAAGA{CT}GTT{AC}GGAGAGGTTGC-CGGGTTGAAACGGGCCCGTGAGGCGACGTACGGGTGAA{AC}GGATTGACG-AGGGAACTTCCTGGGATAAGGGATAAAAGAATAAAACAAAG{AG}ATGTATTTCGATTGCG110110 Xanthisma_gymnocephalum -----------------------------------------------------------------------------------CGTTCGG{AG}GAGGTTGC-CGGGTTGAAACGGGCCCGTGAGGCGACGTACGGGTGAACGGATGG{AG}CG-AGGGAACTTCCTGGGGTAAGGGATAAAAGATTAAAACAAAG{CT}ATGTATTTCGGTTGCG110110 Xanthisma_rhizomatum CGTCGCA{CG}GCGCTCCCGGAAGTCTGGGAAACGAGAGAA-GCAAAAGACGGACGGCCGCGGGGAGCGACCGGGACGAAGTAAGACGTTC{GT}{CG}AGAGGTTTC-CGGGTTGAAACGGGCCCGTGAGGCGACGTACGGGTGAACGGATGCACG-AGGGAACTTCCTGGGGTAAGGGATAAAAGAATAAAACAAAGGATGTATTT{CT}GGTTGCG110110 Xanthisma_spinulosum CGTCGCGGGCGCTGGCGGAAGTCCGGGAAAG{GT}AGAGAA-GC{AT}AAAGGCGGACG-------------ACCGGGACGAAGTAAGACGTTCGGAGAGGTTGC-CGGGCTGAAACGAGCCCGTGAGGCGACGTACGGGTGAACAAATGGATG-AGGGAACTTCCTGGGGT{AT}AGGGATAAAAGAATTAAACAA{AC}GGGTGTATTTCGGTTGCG010110 Xanthisma_stenolobum CGTCGCGGGCG{CT}TGGCGGAAGTCCGGGAAAGGAGAGAA-G{CT}AAAAGGCGGACG-------------ACCGGGACGAAGTAAGA{AC}GTTCGGAGAGGTTG{CT}-CGGGCTGAAACGAG{CG}CCGTGAGGCGACGTACGGGTGAACAAATGGATG-AGGGAACTTCCTG{AG}GGTAAGGGATAAAAGAATTAAACAAAGG{AG}TGTATTTCGGTTGCG010110 Xanthisma_texanum CGTCGCAGGCGCTCG{CG}GGAAGTCCGGGAAACGAG{AG}GAA-GCAAAAGACGGACGGGCG{AG}GGGGAGCGACCGGGACGA{AG}A{CT}AAGACGTTCGGAGAGGTTGC-CGGGTT{AG}AAACGAT{CG}CCGCGAGGCGACGTACGGGTGAGCAAAAGGA{AG}{AG}-AGGGAACTTCCTG{AG}G{AG}TAAAGGATAAAAGAATTAAACAAAGGATGTATTTCGGTTGCG110110 Xanthisma_viscidum CGTCGCAGGCGCTCGCGGGAGTACGGGAAACGAGAGAA-GCAAAAGAGGGACGGGCGCGGGGAGCGACCGGGACGAGGTAAGACGTTCGGAGAGGTTGC-CGGGTTGAAAC{AG}AGCCCGTGAGGCGAGGCACGGGTGAACAGATGGATG-AGGGAACTTCCTGGGGTAAGGGATAAAAGAATTAAACAAAGGATGTATT{GT}CGGTTGCG110110 Xanthocephalum_gymnospermoides ----------------------------------AAAA-GCAAAAGACGGACGGGCGCGGGGAGCGACCGGGAC{GT}AAGTAGGACGTTCGGAGAGGTTAC-GGGGCTGAAACGAGCGCGTGGGGCGACGTACGGGTGAACAAATGGATG-GGGGGACTTCCTGGGGAAATGGTTAAAAGCATTAAACGAAGGATGTATTTCGGTTGCG110110 Xylorhiza_wrightii TGTCGCAGGC{AG}CCCGCGAAAGACGTGGAAACGAGAAA{AG}-GCAAAAGACTGACGGGCGC{AG}GGGAGTGACCGGGAAGAA{AG}TAAGA{CT}GTTCGGTGA{GT}GTTAC-C{CT}GGTTGAAACGAGCCCGTGAGGCGACA{CT}A-GGGTGAACAAAA{AG}GGGG-AGGGAACTTCC{CT}GG{GT}GTAAGGGATAAAACCATTAAACAGAGGATGT{AT}TTTCGGTTGCG110110 ; END; [ The following blocks are output data for analysis step 4889 ] BEGIN TREES; TITLE Tb10297; LINK TAXA = TaxaForAnalysisStep4889; TREE Fig._2 = [&R] ((Psilactis_brevilingulata,Symphyotrichum_drummondii),Herrickia_kingii,(((Xylorhiza_wrightii,(Arida_blepharophylla,(Dieteria_canescens,Dieteria_bigelovii))),(Arida_riparia,(Arida_turneri,Arida_parviflora))),((Xanthisma_texanum,((Xanthisma_rhizomatum,Xanthisma_crutchfieldii,Xanthisma_gymnocephalum,(Xanthisma_coloradoense,Xanthisma_grindelioides,Xanthisma_blephariphylla)),Xanthisma_viscidum),((Xanthisma_spinulosum,Xanthisma_stenolobum),Xanthisma_gracile),(Machaeranthera_tanacetifolia,(Oonopsis_wardii,Oonopsis_engelmannii))),(((Haplopappus_glutinosus,(Corethrogyne_filaginifolia,Lessingia_glandulifera)),Hazardia_squarrosa),((Pyrrocoma_crocea,Pyrrocoma_lanceolata),((Xanthocephalum_gymnospermoides,(Rayjacksonia_phyllocephala,Isocoma_veneta)),Grindelia_ciliata)))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr6492] END;