#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 13:32 GMT TreeBASE (cc) 1994-2008 Study reference: Crous P.W., Groenewald J.Z., Summerell B., Wingfield B.D., & Wingfield M.J. 2009. Co-occurring species of Teratosphaeria on Eucalyptus. Persoonia, 22: 38-48. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S9972] [ The following blocks are input data for analysis step 4959 ] BEGIN TAXA; TITLE TaxaForAnalysisStep4959; DIMENSIONS NTAX=30; TAXLABELS Coniothyrium_palmarum_AY720708 Coniothyrium_palmarum_DQ240000 Coniozyma_leucospermi_AY720707 Paraconiothyrium_brasiliense_AY642531 Paraconiothyrium_cyclothyrioides_AY642529 Paraconiothyrium_estuarinum_AY642530 Paraconiothyrium_fungicola_AY642532 Teratosphaeria_cryptica_AF309623 Teratosphaeria_cryptica_DQ302951 Teratosphaeria_dimorpha_CPC_14132 Teratosphaeria_gauchensis_DQ303068 Teratosphaeria_gauchensis_EU019290 Teratosphaeria_juvenalis_AY725513 Teratosphaeria_juvenalis_AY725514 Teratosphaeria_juvenalis_AY725516 Teratosphaeria_molleriana_AY150675 Teratosphaeria_molleriana_AY725530 Teratosphaeria_molleriana_EF394844 Teratosphaeria_nubilosa_AY725572 Teratosphaeria_nubilosa_AY725574 Teratosphaeria_ovata_CPC_14632 Teratosphaeria_suttonii_AF309621 Teratosphaeria_veloci_CPC_14600 Teratosphaeria_verrucosa_AY725515 Teratosphaeria_verrucosa_AY725517 Teratosphaeria_verrucosa_CPC_12949 Teratosphaeria_zuluensis_DQ239976 Teratosphaeria_zuluensis_DQ240203 Teratosphaeria_zuluensis_DQ240207 Teratosphaeria_zuluensis_DQ303067 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M4491] TITLE ITS_only; LINK TAXA = TaxaForAnalysisStep4959; DIMENSIONS NCHAR=759; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Coniothyrium_palmarum_AY720708 ----------------------------------------------------------------------------------------------------------------------------------AGGATCATTAACTATATCTCGGGGGGCCGGACCCAAGGTGCGAGCGTACACGGCGTT-----------TAACCACGCTGTGGCATTCGACATTTTGACCCGCCCTGTCTGAATATATACCCCTGTTTATTGCGTACTACTTGT-TTCCTT-GGTGGGCTTGCCCG-------------------CCAAAAGGACACCTATAAAACCTCT-TGTAATTGCAGT---CAGCG--------TCAGAAAAACTTAATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCC-TCAAGCTTTGCTTGGTGTTGGGTGTTTGTCCCGTGT-TATGCGTGGACTCGCCTTAAAGCGATTGGCAGCCGGCATA-TTGGCCGTGGAGCAGCAGTA------CATTCAGCTCTCTACAC--CATAAAGTTGGCATCCATCAAGTCTATACATTTGCTCTTGACCTCGGATCAGG------------------------------ Coniothyrium_palmarum_DQ240000 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGCGAGCGTACACGGCGTT-----------TAACCACGCTGTGGCATTCGACATTTTGACCCGCCCTGTCTGAATATATACCCCTGTTTATTGCGTACTACTTGT-TTCCTT-GGTGGGCTTGCCCG-------------------CCAAAAGGACACCTATAAAACCTCT-TGTAATTGCAGT---CAGCG--------TCAGAAAAACTTAATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCC-TCAAGCTTTGCTTGGTGTTGGGTGTTTGTCCCGTGT-TATGCGTGGACTCGCCTTAAAGCGATTGGCAGCCGGCATA-TTGGCCGTGGAGCAGCAGTA------CATTCAGCTCTCTACAC--CATAAAGTTGGCATCCATCAAGTC----------------------------------------------------------- Coniozyma_leucospermi_AY720707 ----------------------------------------------------------------------------------------------------------------------------------AGGATCATTAAAGA-------------------------GTTAGGGTCCTAGTG------------------------------------GCCCAACCTCCAACCCTCTGTTGTTAAAACTACCTTGTTGCTTTGGCGGGACCGTTCGGTCTCCGAGCGCGTTAACCTCCGGGTTGGCGAGCGCCCGCCAGAGTCCAACCAAACTCTT-----GTATTAAAC--CAGTCGTCTGAG-TATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCAAGCACTGCTTGGTGTTGGGCATCG----TCCGTCGAAAGGCGGGCGTGCCTCGAAGACCTCGGCGGGGTTTCTT--CAACTTCGGGCGTAGTAGAGTTAAATCAAACGTCTTATAAGCTTGGTGAGATCTCATTGCCGTTAAACCTTTTATTTCAGGTTGACCTCGGATCAGG------------------------------ Paraconiothyrium_brasiliense_AY642531 -------------------------------------------------------------------------------------------------------------------------------------ATCTATTCCATG--------------------AGGTGCGGTCGCGGCCCTCGGCGGGAGCATCAGCTGCCGTCGGGCGGTAGAGGTAACACTTTCACGCGCCGCATGTCTGAAT--CCTTTTTTTACGAGCACCTTTCGTTCTCCTTCGGCGGGGCAACCTG-------------------CCGTTGGAACCTAT-CAAAACCTTT----TTTTGCATC---TAGCATTACCTGTTCTGATACAAACAATCGTTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTACACCC-TCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCTCTGCGCGCGGACTCGCCCCAAATGCATTGGCAGCGGTCCTTGCCTCCTCTCGCGCAGCA---------CATTGCGCTTCTCGAGG--TGCGCGGCCCGCGTCCACGAAGCAACATT-ACCGTCT---------------------------------------------- Paraconiothyrium_cyclothyrioides_AY642529 --------------------------------------------------------------------------------------------------------------------------------------ACCAATTCAA---------------------CGGTGTGGTCGCGGCCTCCGGGGG---------CTCCCCCCGGGCGGTAGAGGTAACACTCTTACGCGCCACATGTCTGAAT--CCTTTTTTTACGAGCACCTTTCGTTCTCCTTCGGTGGGGCAACCTG-------------------CCGTTGGAACTTAT-CAAAACCTT-----TTTTGCATC---TAGCATTACCTGTTCAGATACAAACAATCGTTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTACACCC-TCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCTCTGCGCGTGGACTCGCCCCAAATTCATTGGCAGCGGTCTTTGCCTCCTCTCGCGCAGCA---------CATTGCGCTTT-AGAGG--GGTGTGGGCCGCGTCCACGAAGCAACATT-ATCGTCT---------------------------------------------- Paraconiothyrium_estuarinum_AY642530 --------------------------------------------------------------------------------------------------------------------------------------ACCAATTCAA---------------------CGGTGTGGTCGCGGCCTCCGGGGGT--------TCCCCCCCGGGCGGTAGAGGTAACACTCTCACGCGCCACATGTCTGAAT--CCTTTTTTTACGAGCACCTTTCGTTCTCCTTCGGTGGGGCAACCTG-------------------CCGCTGGAACTTAT-CAAAACCTT-----TTTTGCATC---TAGCATTACCTGTTCAGATACAAACAATCGTTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTACACCC-TCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCTCTGCGCGTGGACTCGCCCCAAATTCATTGGCAGCGGTCTTTGCCTCCTCTCGCGCAGCA---------CATTGCGCTTC-AGAGG--GGCGTGGGCCGCGTCCACGAAGCAACATT-ACCGTCT---------------------------------------------- Paraconiothyrium_fungicola_AY642532 --------------------------------------------------------------------------------------------------------------------------------------TCTATTTGTT---------------------GGATGTGGTCGCGGCCCCCGTAA---------------CCCGGGTGGTAGGGGTAACACCCTCACGCGCCACATGCACTAAT--CCTCTTTTTACGAGCACCTTCTGTTCTCCTTCGGCGGGGCAACCTG-------------------CCGTTGGAACCAA--CAAAACCT------TTTTGAA{GT}T---CAGTATTACCTGTTCTGATACAAACAATCGTAACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGTGGGGCATGCCTGTTCGAGCGTCATCTACACCC-TCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCTCTGCGCGCGGACTCGCCCCAAATTCATTGGCAGCGGTCCTTGCCTCCTCTCGCGCAGCA---------CATTGCGTCTA-CGAGG--GGCGCGGCCCGCGTCCACGAAGCAACATTTACCGTCT---------------------------------------------- Teratosphaeria_cryptica_AF309623 --------------------------------------------------------------------------------------------------------------TCCGTAGGTGAACCTGCGGAGGGATCATTACCGA-------------------------GTGAGGGCGCCC---------------------------------------GCCCGACCTCCAACCCCATGTT-TTCCAAC---CATGTTGCCTCG------------------GGGGCGACCCGGCCGCC--------------GTGCCGGGGCCCCCGGCGGACCCCT-CAACTCTGCATC--TTTGCGTCTGAG--TGATAACG-AAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTACACCCC-TCCAGCCTCGCTGGGTGTTGGGCATCG------------CGGCCTCCGCGCGCCTCAATGTCTCCGGCCGAGCCGAC--CGTCTCTAAGCGTTGTGGCA-CAACTGTTTCGCTTCC-GGGACCGGTCTGGCGTCGCGCCGTCAACCCCCTCTCTCACAGGTTGACCTCGGATCAGGTAGGGATA---------------------- Teratosphaeria_cryptica_DQ302951 ---------------------------------------------------------------------------------------------------------------------------------AGGGATCATTACCGA-------------------------GTGAGGGCGCCC---------------------------------------GCCCGACCTCCAACCCCATGTT-TTCCAAC---CATGTTGCCTCG------------------GGGGCGACCCGGCCGCC--------------GTGCCGGGGCCCCCGGCGGACCCCT-CAACTCTGCATC--TTTGCGTCTGAG--TGATAACGAAAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTACACCCC-TCCAGCCTCGCTGGGTGTTGGGCATCG------------CGGCCTCCGCGCGCCTCAATGTCTCCGGCCGAGCCGAC--CGTCTCTAAGCGTTGTGGCA-CAACTGTTTCGCTTCC-GGGACCGGTCCGGCGTCGCGCCGTCAACCCCCTCTCTCACAGGTTGACCTCGGATCAGGTAGGGATA---------------------- Teratosphaeria_dimorpha_CPC_14132 -GGCTCAGTGAGGCGTCCGGACTGGCCCAGGGAGGTCGGCAACGACCACCCAGGGCCGGAAAGTTCGTCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACTGA-------------------------GTGAGGGCGCGA---------------------------------------GCCCGACCTCCAACCCCATGTC-TCCCAAC---CATGTTGCCTCG------------------GGGGCGACCCGGCC-CC--------------GCGCCGGGGCCCCCGGCAGACCCCT-CAACTCTGCATC--TGTGCGTCTGAG--TAACGAAAT-AAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCCAGCCTCGCTGGGTCTTGGGCGCCG------------CGGCCTCCGCGCGCCTCAATGTCTCCGGCCGAGCCGAC--CGTCTCCAAGCGTTGTGGCA-CAACTGTTTCGCTTCT-GGGACCGGTCCGGCGCCGCGCCGCTAAACCCTTTCACCAAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCA Teratosphaeria_gauchensis_DQ303068 --------------------------------------------------------------------------------------------------------------------GGTGAACCTGCGGAGGGATCATTACTGA-------------------------GCGAGGGCGCGA---------------------------------------GCCCGACCTCCAACCCCATGTT-TTCCAAC---CACGTTGCCTCG------------------GGGGCGACCCGGCCACC--------------GCGCCGGGGCCCCCGGCGGACCCCT-CAACTCTGCATC--TTTGCGTCTGAG--TCACAAAATAAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCCAGCCTCGCTGGGTATTGGGCGCCG------------CGGCCTCCGCGCGCCTTAATGTCTCCGGCCGAGCCGAC--CGTCTCTAAGCGTTGTGGCA-CAACTGTTTCGCTTTC-GGGACCGGTCTGGCGACGCGCCGTTAAACCCTTTCACCAAAGGTTGACCTCGGATCAGGTAGGGATA---------------------- Teratosphaeria_gauchensis_EU019290 TGGCTCAGTGAGGCGTCCGGACTGGCCCAGGGAGGTCGGCAACGACCACCCAGGGCCGGAAAGTTCGTCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACTGA-------------------------GCGAGGGCGCGA---------------------------------------GCCCGACCTCCAACCCCATGTT-TTCCAAC---CACGTTGCCTCG------------------GGGGCGACCCGGCCACC--------------GCGCCGGGGCCCCCGGCGGACCCCT-CAACTCTGCATC--TTTGCGTCTGAG--TCACAAAATAAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCCAGCCTCGCTGGGTATTGGGCGCCG------------CGGCCTCCGCGCGCCTTAATGTCTCCGGCCGAGCCGAC--CGTCTCTAAGCGTTGTGGCA-CAACTGTTTCGCTTTC-GGGACCGGTCTGGCGACGCGCCGTTAAACCCTTTCACCAAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCA Teratosphaeria_juvenalis_AY725513 ---------------------------------------------------------------------------------------------------------------------------------AGGGATCATTACTGA-------------------------GTGAGGGCGTGA---------------------------------------GCCCGACCTCCAACCCCATGTT-TCCAACC---CATGTTGCCTCG------------------GGGGCGACCCGGCCGCC--------------GCGCCGGGGCCCCCGGTGGACCCCT-CAAC-CTGCATC--TTTGCGTCTGAG--TGATGAGA-GAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTCCGGCGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCCAGCCTCGCTGGGTATTGGGCGCCG------------CGGCCTCCGCGCGCCTTAATGTCTCCGGCCGAGCCGAC--CGTCTCTAAGCGTTGTGGCA-CCACTGTTTCGCTTCG-GGGACCGGTCCGGCGACACGCCGTTAAACCCTTTCACCAAAGGTTGACCTCGGATCAGG------------------------------ Teratosphaeria_juvenalis_AY725514 ---------------------------------------------------------------------------------------------------------------------------------AGGGATCATTACTGA-------------------------GTGAGGGCGTGA---------------------------------------GCCCGACCTCCAACCCCATGTT-TCCAACC---CATGTTGCCTCG------------------GGGGCGACCCGGCCGCC--------------GCGCCGGGGCCCCCGGTGGACCCCT-CAAC-CTGCATC--TTTGCGTCTGAG--TGATGAGA-GAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTCCGGCGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCCAGCCTCGCTGGGTATTGGGCGCCG------------CGGCCTCCGCGCGCCTTAATGTCTCCGGCCGAGCCGAC--CGTCTCTAAGCGTTGTGGCA-CCACTGTTTCGCTTCG-GGGACCGGTCCGGCGACACGCCGTTAAACCCTTTCACCAAAGGTTGACCTCGGATCAGG------------------------------ Teratosphaeria_juvenalis_AY725516 ---------------------------------------------------------------------------------------------------------------------------------AGGGATCATTACTGA-------------------------GTGAGGGCGTGA---------------------------------------GCCCGACCTCCAACCCCATGTT-TCCAACC---CATGTTGCCTCG------------------GGGGCGACCCGGCCGCC--------------GCGCCGGGGCCCCCGGTGGACCCCT-CAAC-CTGCATC--TTTGCGTCTGAG--TGATGATA-GAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTCCGGCGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCCAGCCTCGCTGGGTATTGGGCGCCG------------CGGCCTCCGCGCGCCTTAATGTCTCCGGCCGAGCCGAC--CGTCTCTAAGCGTTGTGGCA-CCACTGTTTCGCTTCG-GAGACCGGTCCGGCGACACGCCGTTAAACCCTTTCACCAAAGGTTGACCTCGGATCAGGTA---------------------------- Teratosphaeria_molleriana_AY150675 --------------------------------------------------------------------------------------------------------------TCCGTAGGTGAACCTGCGGAGGGATCATTACTGA-------------------------GTGAGGGCGCAA---------------------------------------GCCCGACCTCCAACCCCATGTT-TCCAAAC---CACGTTGCCTCG------------------GGGGCGACCCGGCCGCC--------------GCGCCGGGGCCCCCGGTGGACCCCT-CAACTCTGCATC--TCTGCGTCTGAG--TCACAAAAT-AAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCCGGCCTCGCTGGGTATTGGGCGCCG------------CGGCCTCCGCGCGCCTCGAAGTCTCCGGCCGAGCCGAC--CGTCTCCAAGCGTTGTGGCA-CAACTGTTTCGCTTTC-GGGACCGGTCTGGCGGCGCGCCGTTAAACCCTTTCACCAAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCA Teratosphaeria_molleriana_AY725530 ---------------------------------------------------------------------------------------------------------------------------------AGGGATCATTACTGA-------------------------GTGAGGGCGCAA---------------------------------------GCCCGACCTCCAACCCCATGTT-TCCAAAC---CACGTTGCCTCG------------------GGGGCGACCCGGCCGCC--------------GCGCCGGGGCCCCCGGTGGACCCCT-CAACTCTGCATC--TCTGCGTCTGAG--TCACAAAAT-AAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCCGGCCTCGCTGGGTATTGGGCGCCG------------CGGCCTCCGCGCGCCTCGAAGTCTCCGGCCGAGCCGAC--CGTCTCCAAGCGTTGTGGCA-CAACTGTTTCGCTTTC-GGGACCGGTCTGGCGGCGCGCCGTTAAACCCTTTCACCAAAGGTTGACCTCGGATCAGGTAGGGATA---------------------- Teratosphaeria_molleriana_EF394844 TGGCTCAGTGAGGCGTTCGGACTGGCCCAGGGAGGTCGGCAACGACCACCCAGGGCCGGAAAGTTCGTCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACTGA-------------------------GTGAGGGCGCAA---------------------------------------GCCCGACCTCCAACCCCATGTT-TCCAAAC---CACGTTGCCTCG------------------GGGGCGACCCGGCCGCC--------------GCGCCGGGGCCCCCGGTGGACCCCT-CAACTCTGCATC--TCTGCGTCTGAG--TCACAAAAT-CAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCCGGCCTCGCTGGGTATTGGGCGCCG------------TGGCCTCCGCGCGCCTCGAAGTCTCCGGCCGAGCCGAC--CGGCTCCAAGCGTTGTGGCA-CAACTGTTTCGCTTTC-GGGACCGGTCTGGCGGCGCGCCGTTAAACCCTTTCACCAAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGC------ Teratosphaeria_nubilosa_AY725572 --------------------------------------------------------------------------------------------------------------TCCGTAGGTGAACCTGCGGAGGGATCATTACTGA-------------------------GTGCGGGCGCCA---------------------------------------GCCCGACCTCCTACCCCATGTT-TTCCCAC---CACGTTGCCTCG------------------GGGGCGACCCGGCCCCC--------------GCGCCGGGGCCCTCGCAGGACCCCT-CAACGCTGCATC--TGTGCGTCGGAG--TAATACAA-CCAATCAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCACCAC-TCCAGCCCCGCTGGGTCTTGGGCGCCG------------CGGCCTCCGCGCGCCTCAATGTCTCCGGCCGAGCCGAC--CGTCTCTCAGCGTTGTGGCA-CTACTGTTTCGCTGACGGGGACCGGTCTGGCGGCGCGCCGTTAAACCCTTTCACCAAAGGTTGACCTCGGATCAGGTAGGGATA---------------------- Teratosphaeria_nubilosa_AY725574 ----------------------------------------------------------------------------------------------------------------------------------GGGATCATTACTGA-------------------------GTGCGGGCGCCA---------------------------------------GCCCGACCTCCAACCCCATGTT-TTCCCAC---CACGTTGCCTCG------------------GGGGCGACCCGGCCACC--------------GCGCCGGGGCCCTCGCAGGACGCCT-CAACGCTGCATC--TGTGCGTCGGAG--TAATACAA-CCAATCAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCACCAC-TCCAGCCTCGCTGGGTCTTGGGCGCCG------------CGGCCTCCGCGCGCCTCAATGTCTCCGGCCGAGCCGAC--CGTCTCTCAGCGTTGTGGCA-CCACTGTTTCGCTGACGGGGACCGGTCTGGCGGCGCGCCGTTAAACCCTTTCACCAAAGGTTGACCTCGGATCAGGTAGGGATA---------------------- Teratosphaeria_ovata_CPC_14632 TGGCTCAGTGAGGCGTCCGGACTGGCCCAGGGAGGTCGGCAACGACCACCCAGGGCCGGAAAGTTCGTCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACTGA-------------------------GTGAGGGCGCGA---------------------------------------GCCCGACCTCCAACCCCATGTT-TCCAAAC---CACGTTGCCTCG------------------GGGGCGACCCGGCCCTG--------------GCGCCGGGGCCCCCTGAGGACCCCT-CAACTCTGCATC--TGTGCGTCTGAG--T-ACATAAATCAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCCAGCCTCGCTGGGTATTGGGCGTCG------------CGGCCGCCGCGCGCCTCAATGTCTCCGGCCGAGCCGAC--CGTCTCTAAGCGTTGTGGCA-CAACTGTTTCGCTTTCTGGGACCGGTCCGGCGACGCGCCGTTAAACCCTTTCACCAAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCA Teratosphaeria_suttonii_AF309621 ---------------------------------------------------------------------------------------------------------------------------------AGGGATCATTACCGA-------------------------GCGAGGGCGTCAG--------------------------------------GCCCGACCTCCGACCCTTTTGTGTCCTACAC--CCTGTTGCCTCG------------------GGGGCGACCCGGCCGCC--------------GCGTCGGGCCCCCCTGAGGACCCTC-TAACCCTGCGTCCTCTTGCGTCTGAG-TCGTGAGTAGAAATTGAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATAATCGAATCTTTGAACGCACATTGCGCCCTCCGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATCAACCCACCTCAAGCCTCGCTTGGTGTTGGGCGTCG------------CGGCCGCCGCGCGCCCTAATGTCCCCGGCCGAGCCGGC--CGTCCCGAAGCGTTGTGGCGTCTACTGTGCCGCTTCC-GGGACCGGTCTGGCGGTGTGCCGTCAAACCCCTTCATCAAAGGTTGACCTCGGATCAGGCAGGGATA---------------------- Teratosphaeria_veloci_CPC_14600 -------GTGAGGCGTCCGGACTGGCCCAGGGAGGTCGGCAACGACCACCCAGGGCCGGAAAGTTCGTCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATCATTACTGA-------------------------GCGAGGGCGCGA---------------------------------------GCCCGACCTCCCACCCCATGTTGTCGAAAC---CATGTTGCCTCG------------------GAGGCGACCCGGCCG-C--------------GCGCCGGGGCCCCCGCTGGACCCCT-CAACCCTGCATC--TCTGCGTCTGAG-GATATCGAATGAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCACCAC-TCCAGCCTGGCTGGGTGTTGGGCTCCG------------CGGCCTCCGCGCGCCTTAATGTCTCCGGCCGAGCCGAC--CGTCTCCAAGCGTTGTGGCA-CAACTGTTTCGCTTCG-GGGACCGGTCTGGCGCCGCGCCGTCAAA-CCTTCCACTTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCA Teratosphaeria_verrucosa_AY725515 ---------------------------------------------------------------------------------------------------------------------------------AGGGATCATTACTGA-------------------------GTGAGGGCGCGA---------------------------------------GCCTGACCTCCAACCCCATGTT-TCCAACC---CATGTTGCCTCG------------------GGGGCGACCCGGCCGTC--------------GCGCCGGGGCCCCCGGTGGACCCCT-CACC-CTGCATC--TTTGCGTCTGAG--TGATA----GAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTCCGGCGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCCAGCCTCGCTGGGTATTAGGCGCCG------------CGGCCGCCGCGCGCCTTAATGTCTCCGGCCGAGCCGAC--CGTCTCTAAGCGTTGTGGCA-CTACTGTTTCGCTTTA-GGGACCGGTCCGGCGACGCGCCGTTAAACCCTTTCACCAAAGGTTGACCTCGGATCAGG------------------------------ Teratosphaeria_verrucosa_AY725517 ---------------------------------------------------------------------------------------------------------------------------------AGGGATCATTACTGA-------------------------GTGAGGGCGCGA---------------------------------------GCCTGACCTCCAACCCCATGTT-TCCAACC---CATGTTGCCTCG------------------GGGGCGACCCGGCCGTC--------------GCGCCGGGGCCCCCGGTGGACCCCT-CACC-CTGCATC--TTTGCGTCTGAG--TGATA----GAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTCCGGCGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCCAGCCTCGCTGGGTATTAGGCGCCG------------CGGCCGCCGCGCGCCTTAATGTCTCCGGCCGAGCCGAC--CGTCTCTAAGCGTTGTGGCA-CTACTGTTTCGCTTTA-GGGACCGGTCCGGCGACGCGCCGTTAAACCCTTTCACCAAAGGTTGACCTCGGATCAGG------------------------------ Teratosphaeria_verrucosa_CPC_12949 ----------------------------------------------------------------------------------------------------------GGTCTCCGTAGGTGAACCTGCGGAGGGATCATTATCGA-------------------------GTGAGGGCGCGA---------------------------------------GCCTGACCTCCAACCCCATGTT-TCCAACC---CATGTTGCCTCG------------------GGGGCGACCCGGCCGTC--------------GCGCCGGGGCCCCCGGTGGACCCCT-CACC-CTGCATC--TTTGCGTCTGAG--TGATA----GAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTCCGGCGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCCAGCCTCGCTGGGTATTAGGCGCCG------------CGGCCGCCGCGCGCCTTAATGTCTCCGGCCGAGCCGAC--CGTCTCTAAGCGTTGTGGCA-CTACTGTTTCGCTTTA-GGGACCGGTCCGGCGACGCGCCGTTAAACCCTTTCACCAAAGGTTGACCTCGGATCAGGTAGGGATA---------------------- Teratosphaeria_zuluensis_DQ239976 ---------------------------------------------------------------------------------------------------------------------------ACTCGGAGGGATCATTACTGA-------------------------GTGAGGGCGCAA---------------------------------------GCCCGACCTCCAACCCCATGTT-TTCTAAC---CATGTTGCCTCG------------------GGGGCGACCCGGCCATC--------------GCGCCGGGGCCCCCGGTGGACCCCTCCAACTCTGCATC--TTTGCGTCTGAG--TCACAAAATAAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCCAGCCTCGCTGGGTATTGGGCGCCG------------CGGCCTCCGCGCGCCTTAATGTCTCCGGCCGAGCCGAC--CGTCTCCAAGCGTTGTGGCA-CAACTGTTTCGCTTTC-GGGACCGGTCCGGCGACGCGCCGTTAAACCCTTTCACCAAAGG---------------------------------------------- Teratosphaeria_zuluensis_DQ240203 ----------------------------------------------------------------------------------------------------------------------------TGCGGAGGGATCATTACTGA-------------------------GTGAGGGCGCAA---------------------------------------GCCCGACCTCCAACCCCATGTT-TTCCAAC---CATGTTGCCTCG------------------GGGGCGACCCGGCCATC--------------GCGCCGGGGCCCCCGGTGGACCCCTCCAACTCTGCATC--TTTGCGTCTGAG--TCACAAAATAAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCCAGCCTCGCTGGGTATTGGGCGCCG------------CGGCCTCCGCGCGCCTTAATGTCTCCGGCCGAGCCGAC--CGTCTCCAAGCGTTGTGGCA-CAACTGTTTCGCTTTC-GGGACCGGTCCGGCGACGCGCCGTTAAACCCTTTCACCAAAGGT--------------------------------------------- Teratosphaeria_zuluensis_DQ240207 ----------------------------------------------------------------------------------------------------------------------------CTCGGAGGGATCATTACTGA-------------------------GTGAGGGCGCAA---------------------------------------GCCCGACCTCCAACCCCATGTT-TTCTAAC---CATGTTGCCTCG------------------GGGGCGACCCGGCCATC--------------GCGCCGGGGCCCCCGGTGGACCCCTCCAACTCTGCATC--TTTGCGTCTGAG--TCACAAAATAAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCCAGCCTCGCTGGGTATTGGGCGCCG------------CGGCCTCCGCGCGCCTTAATGTCTCCGGCCGAGCCGAC--CGTCTCCAAGCGTTGTGGCA-CAACTGTTTCGCTTTC-GGGACCGGTCCGGCGACGCGCCGTTAAACCCTTTCACCAAAGGT--------------------------------------------- Teratosphaeria_zuluensis_DQ303067 --------------------------------------------------------------------------------------------------------------------GGTGAACCTGCGGAGGGATCATTACTGA-------------------------GTGAGGGCGCAA---------------------------------------GCCCGACCTCCAACCCCATGTT-TTC-AAC---CATGTTGCCTCG------------------GGGGCGACCCGGCCATC--------------GCGCCGGGGCCCCCGGTGGACCCCTCCAACTCTGCATC--TTTGCGTCTGAG--TCACAAAATGAAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTACACCAC-TCCAGCCTCGCTGGGTATTGGGCGCCG------------CGGCCTCCGCGCGCCTTAATGTCTCCGGCCGAGCCGAC--CGTCTCCAAGCGTTGTGGCA-CAACTGTTTCGCTTTC-GGGACCGGTCCGGCGACGCGCCGTTAAACCCTTTCACCAAAGGTTGACCTCGGATCAGGTAGGGATA---------------------- ; END; BEGIN SETS; CHARSET its (CHARACTERS = ITS_only) = 166-187 218-267 284-300 315-580 592-700; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS_only) = N: 1-759; CODONPOSSET CodonPositions (CHARACTERS = ITS_only) = N: 1-759; END; [ The following blocks are output data for analysis step 4959 ] BEGIN TREES; TITLE Tb10367; LINK TAXA = TaxaForAnalysisStep4959; TREE Fig._1 = [&R] (Coniozyma_leucospermi_AY720707,(((Teratosphaeria_cryptica_DQ302951,Teratosphaeria_cryptica_AF309623)Teratosphaeria_cryptica,((((((((Teratosphaeria_molleriana_AY150675,Teratosphaeria_molleriana_AY725530),Teratosphaeria_molleriana_EF394844)Teratosphaeria_molleriana,Teratosphaeria_ovata_CPC_14632),Teratosphaeria_dimorpha_CPC_14132),((Teratosphaeria_zuluensis_DQ303067,(Teratosphaeria_zuluensis_DQ240207,Teratosphaeria_zuluensis_DQ239976)),Teratosphaeria_zuluensis_DQ240203)Teratosphaeria_zuluensis),(Teratosphaeria_gauchensis_DQ303068,Teratosphaeria_gauchensis_EU019290)Teratosphaeria_gauchensis),(((Teratosphaeria_verrucosa_CPC_12949,Teratosphaeria_verrucosa_AY725517,Teratosphaeria_verrucosa_AY725515)Teratosphaeria_verrucosa,(Teratosphaeria_juvenalis_AY725513,Teratosphaeria_juvenalis_AY725514,Teratosphaeria_juvenalis_AY725516)Teratosphaeria_juvenalis),Teratosphaeria_veloci_CPC_14600)),(Teratosphaeria_nubilosa_AY725572,Teratosphaeria_nubilosa_AY725574)Teratosphaeria_nubilosa)),Teratosphaeria_suttonii_AF309621)Teratosphaeria,((Coniothyrium_palmarum_AY720708,Coniothyrium_palmarum_DQ240000)Coniothyrium_palmarum,(Paraconiothyrium_brasiliense_AY642531,((Paraconiothyrium_cyclothyrioides_AY642529,Paraconiothyrium_estuarinum_AY642530),Paraconiothyrium_fungicola_AY642532)Paraconiothyrium))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr6552] END;