#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 05, 2025; 18:15 GMT TreeBASE (cc) 1994-2008 Study reference: Kennedy A.H., & Watson L. 2010. Species Delimitations and Phylogenetic Relationships within in the Fully Myco-heterotrophic Hexalectris (Orchidaceae). Systematic Botany, 35(1): 64-76. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10104] [ The following blocks are input data for analysis step 5256 ] BEGIN TAXA; TITLE TaxaForAnalysisStep5256; DIMENSIONS NTAX=19; TAXLABELS Bletia_roezlii_32 Hexalectris_brevicaulis_38 Hexalectris_fallax_80 Hexalectris_grandiflora_268 Hexalectris_grandiflora_273 Hexalectris_grandiflora_46 Hexalectris_grandiflora_DQ864656 Hexalectris_nitida_270 Hexalectris_nitida_48 Hexalectris_nitida_66 Hexalectris_parviflora_85 Hexalectris_revoluta_var_colemanii_162 Hexalectris_revoluta_var_colemanii_166 Hexalectris_revoluta_var_revoluta_51 Hexalectris_spicata_var_arizonica_47 Hexalectris_spicata_var_spicata_264 Hexalectris_spicata_var_spicata_266 Hexalectris_warnockii_265 Hexalectris_warnockii_67 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M4446] TITLE ITS_with_INDELS_coded; LINK TAXA = TaxaForAnalysisStep5256; DIMENSIONS NCHAR=763; FORMAT DATATYPE=Standard SYMBOLS= "A C G T 0 1 2 3 4 5" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Bletia_roezlii_32 CTAGGTGAACCTGCGGAAGGATCATTGTCGAGACCGAAATAA--TATCGAGCGATTCAGAGAACCCGTGCATCAGC---GACGGCGGCTACCGTCGCGTAGCATCCGTCCCA-GTCGTGGCCTTGTACCGGGGG-GGCCATGATGAAGGACGGATGAAACACTCAAACCGGCGCAGTCACGCACCAAGGGAAAATATCGAAAAAACACGAGCACCACGCC--AGGCTCAGTGGCGTGGCGTGTTGTTGCACGCCACAGGAATCGACACGACTCTCGACAATGGATATCTCGACTCTCGCATCGATGAAGAGCGCAGCAAAATGTGATA{CT}GTGGTG{CT}GAATTGCAGAATCCCGCGAACCATCGAGAATTTAAACGCAAGTTGCGCCTGAGGCCAGCCGGCCAAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCCAAC--TCCATCCCACCC-AACGGGTGTGTCGGG-CGAGGCTCGGACGTGCAGAGTGGCCCGTCGTGCTCACCGGCACGGCGGGCTGAAGTGTGGGTGATCTTCTCATTTC--CCGCGAACAACAAGGGGTGGATGGAACGCGGCCTACGTTGTGTCGTGCTGGCCTGAGAGAGGATCGCA-CCTTC-GAGGTGA----TCCCAACCCATGCGCCGA-----TCC-ACTGATGGCGGCTTGGAATGCGACCCCAGGATGGGCGAGGCCACCCGCCGAGTTTAAGCATATCAATAAGCG11011001110101111?110 Hexalectris_brevicaulis_38 ??????????????????????CATTGTCGAGACCGAAACAAAACACCGAGCGATTCGGAGAACACGTGCATCGGCGAAGGCGGCCGCCGCCGCCGCCCAGCATCCGT-CCCGGTCGCGGCCTCGTACCGGGGGCGGCCGCGATGGAGGACGGATGAGACACTCAAACCGGCGCAGCCACGCGCCAAGGGAAAATATCGAGAAAACACGAGCCCCG--TCGCGGGCTCGGTGGCCCGGCGTGCCGTCGCACGCCATAGGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCAAGGGCACGTCCGCCTGGGCGTCAGGCGTTGCGTCGCTCCGTGCCAGC--TCCATCCCGCCC-GATGGGCGTGTCGGGGCGAGGCTCGGACGCGCAGAGTGGCCCGTCGTGCCCGCCGGCGCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGCGCCCACGGACAACAAGGGGTGGATGGAACGAGGCCTGCGTTGTGTCGTGCTGGCCCGAGAAAAGATCACGGCCCCCCGAGGCGAGAGATCCCAACCCATGCGCCGACGGCATCCG-CCGGCGGCGGCTTGGAATGCGACCCCAGGATGGGCGAGGCCACCCGCCGAGTTTAAGCATATCAATAAGCG001000101100000000001 Hexalectris_fallax_80 ??????????????????????CATTGTCGAGACCGAAATAAAACATCGAGCGACTCGGAGAACCCGTGCATCGGCGAAGGCGGCCGCTGCCGCCGCGCAGCATCCGT-CCCGGTCGCGGCCTCATACCGGGGGCGGCCGCGATGGAGGACGGATGAGACACTCAAACCGGCGCAGCCACGCGCCAAGGGAGAATATCGAGAAAACCCGAGCCC-GCGTC--GGGCTCGGTGGCCCGGCGTGCCGTCGCACGCCGTGGGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCCAGC--TCCATCTCGCCCCGATGGGCGTGTCGGG-CGAGGCTCGGACGTGCAGAGTGGCCCGTCGTGCCCGCCGGTGCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGTGCCGACGGACAACAATGGGTGGATGGAACGAGGCCTGCGTTGTGCCTTGCCGGCCCGAGAAAAGATCACGGCCCCC-GAGGCGAGAGATCCCAGCCCATGCGCCGACGGCATCCG-CCGGCGGCGGCTTGGAATGCGACCCCAGGATGGGCGAGGCCACCCGCCGAGTTTAAGCATATCAATAAGCG001001011001000100001 Hexalectris_grandiflora_268 GTAGGTGAACCTGCGGAAGGATCATTGTCGAGACCGAAATAAAACACCGAGCGATTCGGAGAACCCGTGCATCGGCGAAGGCGGCCGCCGCCGCCGCGCAGCATCCGT-CCCGGTCGCGGCCTCATACCGGGGGCGGCCACGATGGAGGACGGATGAGACACTCAAACCGGCGCAGCCACGCGCCAAGGGAAAATATCGAGAAAACACGAGCCCCGCGTC--GGGCTCGGTGGCCCGGCGTGCCGTCGCACGCCATAGGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCAAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCCAGC--TCCATCCCGCCC-GATGGGCGTGTCGGGG-GAGGCTCGGACGTGCAGAGTGGCCCGTCGTGCCCTCCGGCGCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGCGCCCACGGACAACAAGGGGTGGATGGAACGAGGCCTGCGTTGTGTCGTGCTGGCCCGAGAAAAGATCACGGCCCCC-GAGGCGAGAGATCCCA{GT}CCCATGCGCCGACGGCATCCA-CCGGCGGCGGCTTGGAATGCGACCCCAGGATGGGCGAGGCCACCCGCCGAGTTTAAGCATATCAATAAGCG001000011100100100001 Hexalectris_grandiflora_273 GTAGGTGAACCTGCGGAAGGATCATTGTCGAGACCGAAATAAAACACCGAGCGATTCGGAGAACCCGTGCATCGGCGAAGGCGGCCGCCGCCGCCGCGCAGCATCCGT-CACGGTCGCGGCCTCATACCGGGGGCGGCCACGATGGAGGACGGATGAGACACTCAAACCGGCGCAGCCACGCGCCAAGGGAAAATATCGAGAAAACACGAGCCCCGCGTC--GGGCTCGGTGGCCCGGCGTGCCGTCGCACGCCATAGGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCAAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCCAGC--TCCATCCCGCCC-GATGGGCGTGTCGGGG-GAGGCTCGGACGTGCAGAGTGGCCCGTCGTGCCCTCCGGCGCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGCGCCCACGGACAACAAGGGGTGGATGGAACGAGGCCTGCGTTGTGTCGTGCTGGCCCGAGAAAAGATCACGGCCCCC-GAGGCGAGAGATCCCAGCCCATGCGCCGACGGCATCCA-CCGGCGGCGGCTTGGAATGCGACCCCAGGATGGGCGAGGCCACCCGCCGAGTTTAAGCATATCAATAAGCG001000011100100100001 Hexalectris_grandiflora_46 GTAGGTGAACCTGCGGAAGGATCATTGTCGAGACCGAAATAAAACACCGAGCGATTCGGAGAACCCGTGCATCGGCGAAGGCGGCCGCCGCCGCCGCGCAGCATCCGT-CACGGTCGCGGCCTCATACCGGGGGCGGCCACGATGGAGGACGGATGAGACACTCAAACCGGCGCAGCCACGCGCCAAGGGAAAATATCGAGAAAACACGAGCCCCGCGTC--GGGCTCGGTGGCCCGGCGTGCCGTCGCACGCCATAGGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCAAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCCAGC--TCCATCCCGCCC-GATGGGCGTGTCGGGG-GAGGCTCGGACGTGCAGAGTGGCCCGTCGTGCCCTCCGGCGCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGCGCCCACGGACAACAAGGGGTGGATGGAACGAGGCCTGCGTTGTGTCGTGCTGGCCCGAGAAAAGATCACGGCCCCC-GAGGCGAGAGATCCCAGCCCATGCGCCGACGGCATCCA-CCGGCGGCGGCTTGGAATGCGACCCCAGGATGGGCGAGGCCACCCGCCGAGTTTAAGCATATCAATAA???001000011100100100001 Hexalectris_grandiflora_DQ864656 ???????????????????????????TCGAGACCGAAATAAAACACCGAGCGATTCGGAGAACCCGTGCATCGGCGAAGGCGGCGGCCGCCGCCGCGCAGCATCCGT-CCCGGTCGCGGCCTCATACCGGGGGCGGCCACGATGGAGGACGGATGAGACACTCAAACCGGCGCAGCCACGCGCCAAGGGAAAATATCGAGAAAACACGAGCCCCGCGTC--GGGCTCGGTGGCCCGGCGTGCCGTCGCACGCCATAGGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCTCCGATGAAGAACGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCAAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCCAGC--TCCATCCCGCCC-GATGGGCGTG-CGGGG-GAGGCTCGGACGTGCAGAGTGGCCCGTCGTGCCCTCCGGCGCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGCGCCCACGGACGACAAGGGGTGGATGGAACGAGGCCTGCGTTGTGTCGTGCTGGCCCGAGAAAAGATCACGGCCCCC-GAGGCGAGAGATCCCAGCCCATGCGCCGACGGCATCCA-CCGGCGGCGGCTTGGAAT?????????????????????????????????????????????????????001000011110100100001 Hexalectris_nitida_270 GTAGGTGAACCTGCGGAAGGATCATTGTCGAGACCGAAATAAAACATCGAGCGACTCGGAGAACCCGTGCATCGGCGAAGGCGGCCGCTG{CT}CGCCGCGCAGCATCCGT-CCCGGTCGCGGCCTCATACCGGGGGCGGCCGCGATGGAGGATGGATGAGACACTCAAACCGGCGCAGCCACGCGCCAAGGGAGAATATCGAGAAAACCCGAGCCC-GCATC--GGGCTCGGTGGCCCGGCGTGCCGTCGCACGCCGTAGGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCC{CT}GAGGCCAGCCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCCAGC--TCCATCTCGCCCCGATGGGCGTGTCGGG-CGAGGCTCGGACGTGCAGAGTGGCCCGTCGTGCCCGCCGGCGCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGTGCCGACGGACAACAATGGGTGGATGGAACGAGGCCTGCGTTGTGCCGTGCTGGCCCGAGAAAAGATCACGGCCCCC-GAGGCGAGAGATCCCAGCCCATGCGCCGACGGCAGCCA-CCGGCGGCGGCTTGGAATGCGACCCCAGGATGGGCGAGGCCACCCGCCGAGTTTAAGCATATCAATAAGCG001001011001000100001 Hexalectris_nitida_48 GTAGGTGAACCTGCGGAAGGATCATTGTCGAGACCGAAATAAAACATCGAGCGACTCGGAGAACCCGTGCATCGGCGAAGGCGGCCGCTGCCGCCGCGCAGCATCCGT-CCCGGTCGCGGCCTCATACCGGGGGCGGCCGCGATGGAGGATGGATGAGACACTCAAACCGGCGCAGCCACGCGCCAAGGGAGAATATCGAGAAAAC{CT}CGAGCCC-GCGTC--GGGCTCGGTGGCCCGGCGTGCCGTCGCACGCCGTAGGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGC{AG}AAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCCAGC--TCCATCTCGCCCCGATGGGCGTGTCGGG-CGAGGCTCGGACGTGCAGAGTGGCCCGTCGTGCCCGCCGGCGCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGTGCCGACGGACAACAATGGGTGGATGGAACGAGGCCTGCGTTGTGCCGTGCTGGCCCGAGAAAAGATCA{CT}GGCCCCC-GAGGCGAGAGATCCCAGCCCATGCGCCGACGGCAGCCA-CCGGCGGCGGCTTGGAATGCGACCCCAGGATGGG{CT}GAGGCCACCCGCCGAGTTTAAGCATATCAATAAGCG001001011001000100001 Hexalectris_nitida_66 GTAGGTGAACCTGCGGAAGGATCATTGTCGAGACCGAAATAAAACATCGAGCGACTCGGAGAACCCGTGCATCGGCGAAGGCGGCCGCTGCCGCCGCGCAGCATCCGT-CCCGGTCGCGGCCTCATACCGGGGGCGGCCGCGATGGAGGATGGATGAGACACTCAAACCGGCGCAGCCACGCGCCAAGGGAGAATATCGAGAAAACCCGAGCCC-GCGTC--GGGCTCGGTGGCCCGGCGTGCCGTCGCACGCCGTAGGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCC{CT}GAGGCCAGCCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCCAGC--TCCATCTCGCCCCGATGGGCGTGTCGGG-CGAGGCTCGGACGTGCAGAGTGGCCCGTCGTGCCCGCCGGCGCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGTGCCGACGGACAACAATGGGTGGATGGAACGAGGCCTGCGTTGTGCCGTGCTGGCCCGAGAAAAGATCACGGCCCCC-GAGGCGAGAGATCCCAGCCCATGCGCCGACGGCAGCCA-CCGGCGGCGGCTTGGAATGCGACCCCAGGATGGGCGAGGCCACCCGCCGAGTTTAAGCATATCAATAAGCG001001011001000100001 Hexalectris_parviflora_85 ??????????????????????CATTGTCGAGACCGAAATAAAACATCGAGCGACTCGGAGAACCCGTGCATCGGCGAAGGCGGCCGCTGCCGCCGCGCAGCATCCGT-CCCGGTCGCGGCCTCATACCGGGGGCGGCCGCGATGGAGGACGGATGAGACACTCAAACCGGCGCAGCCACGCGCCAAGGGAGAATATCGAGAAAACCCGAGCCC-GCGTC--GGGCTCGGTGGCCCGGCGTGCCGTCGCACGCCGTGGGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCCAGC--TCCATCTCGCCCCGATGGGCGTGTCGGG-CGAGGCTCGGACGTGCAGAGTGGCCCGTCGTGCCCGCCGGTGCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGTGCCGACGGACAACAATGGGTGGATGGAACGAGGCCTGCGTTGTGCCTTGCCGGCCCGAGAAAAGATCACGGCCCCC-GAGGCGAGAGATCCCA{GT}CCCATGCGCCGACGGCATCCG-CCGGCGGCGGCTTGGAATGCGACCCCAGGATGGGCGAGGCCACCCGCCGAGTTTAAGCATATCAATAAGCG001001011001000100001 Hexalectris_revoluta_var_colemanii_162 ?????????????????????TCATTGTCGAGACCGAAATAAAACATCGAGCGACTCGGAGAACCCGTGCATCGGCGAAGGCGGCCGCTGCCGCCGCGCAGCATCCGT-CCCGGTCGCGGCCTCATACCGGGGGCGGCCGCGATGGAGGACGGATGAGACACTCAAACCGGCGCAGCCACGCGCCAAGGGAGAATATCGAGAAAACCCGAGCCC-GCGTC--GGGCTCGGTGGCCCGGCGTGCCGTCGCACGCCGT{AG}GGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCCAGC--TCCAT{AC}TCGCCCCG{AT}TGGGCGTGTCG{GT}G-CGAGGCTCGGACGTGCAGAGTGGCCCGTCGTGCCCGCCGG{CT}GCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGTGCCGACGGACAAC{AG}ATGGGTGGATGGAACGAG{GT}CCTGCGTTGTGCC{GT}TGCCGGCCCGAGAAAAGA{CT}CACGGCCCCC-GAGGCGAGAGATCCCAGCCCATGCGCCGACGGCATCCG-CCGGCGGCGGCTTGGAATGCGACCCCAGGATGGGCGAGGCCACCCGCCGAGTTTAAGCATATCAATAAGCG001001011001000100001 Hexalectris_revoluta_var_colemanii_166 ??????????????????????CATTGTCGAGACCGAAATAAAACATCGAGCGACTCGGAGAACCCGTGCATCGGCGAAGGCGGCCGCTGCCGCCGCGCAGCATCCGT-CCCGGTCGCGGCCTCATACCGGGGGCGGCCGCGATGGAGGACGGATGAGACACTCAAACCGGCGCAGCCACGCGCCAAGGGAGAATATCGAGAAAACCCGAGCCC-GCGTC--GGGCTCGGTGGCCCGGCGTGCCGTCGCACGCCGT{AG}GGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCCAGC--TCCAT{AC}TCGCCCCG{AT}TGGGCGTGTCG{GT}G-{AC}GAGGCTCGGACGTGCAGAGTGGCCCGTCGTGCCCGCCGG{CT}GCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGTGCCGACGGACAAC{AG}ATGGGTGGATGGAACGAG{GT}CCTGCGTTGTGCC{GT}TGCCGGCCCGAGAAAAGATCACGGCCCCC-GAGGCGAGAGATCCCAGCCCATGCGCCGACGGCATCCG-CCGGCGGCGGCTTGGAATGCGACCCCAGGATGGGCGAGGCCACCCGCCGAGTTTAAGCATATCAATAAGCG001001011001000100001 Hexalectris_revoluta_var_revoluta_51 GTAGGTGAACCTGCGGAAGGATCATTGTCGAGACCGAAATAAAACATCGAGCGACTCGGAGAACCCGTGCATCGGCGAAGGCGGCCGCTGCCGCCGCGCAGCATCCGT-CCCGGTCGC{CG}GCCTCATACCGGGGGCGGCCGCGATGGAGGACGGATGAGACACTCAAACCGGCGCAGCCACGCGCCAAGGGAGAATATCGAGGAAACCCGAGCCC-GCGTC--GGGCTCGGTGGCCCGGCGTGCCGTCGCACGCCGTAGGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGCGCCAGC--TCCATCTCGCCACGATGGGCGTGTCGGG-CGAGGCTCGGACGTGCAGAGTGGCCCGTCGTGCCCGCCGGCGCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGTGCCGACGGACAACAATGGGTGGATGGAACGAGGCCTGCGTTGTGCCGTGCTGGCCCGAGAAAAGATCACGGCCCCC-GAGGCGAGAGATCCCAGCCCATGCGCC{CG}ACGGCATCCA-CCGGTGGCGGCTTGGAATGCGACCCCAGGATGGGCGAGGCCACCCGCCGAGTTTAAGCATATCAATAAGCG001001011001000100001 Hexalectris_spicata_var_arizonica_47 GTAGGTGAACCTGCGGAAGGATCATTGTCGAGACCGAAATAAAACATCGAGCGACTCGGAGAACCCGTGCATCGGCGAAGGCGGCCGCTGCCGCCGCGCAGCATCCGT-CCCGGTCGCGGCCTCATACCGGGGGCGGCCGCGATGGAGGATGGATGAGACACTCAAACCGGCGCAGCCACGCGCCAAGGGAGAATATCGAGAAAACCCGAGCCC-GCGTC--GGGCTCGGTGGCCCGGCGTGCCGTCGCACGCCGTAGGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGTGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCCAGC--TCCATCTCGCCCCGATGGGCGTGTCGGG-CGAGGCTCGGACGTGCAGAGTGGCCCGTCGTGCCCGCCGGCGCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGTGCCGACGGACAACAATGGGTGGATGGAACGAGGCCTGCGTTGTGCCGTGCTGGCCCGAGAAAAGATCACGGCCCCC-GAGGCGAGAGATCCCAGCCCATGCGCCGACGGCAGCCA-CCGGCGGCGGCTTGGAATGCGACCCCAGGATGGGCGAGGCCACCCGCCGAGTTTAAGCATATCAATAAGCG001001011001000100001 Hexalectris_spicata_var_spicata_264 ??????????????????????????GTCGAGACCGAAATAAAACATCGAGCGACTCGGAGAACCCGTGCATCGGCGAAGGCGGCCGCTGCCGCCGCGCAGCATCCGT-CCCGGTCGCGGCCTCATACCGGGGGCGGCCGCGATGGAGGATGGATGAGACACCCAAACCGGCGCAGCCACGCGCCAAGGGAGAATATCGAGAAAACCCGAGCCC-GCGTC--GGGCTCGGTGGCCCGGCGTGCCGTCGCACGCCGAAGGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCCAGC--TCCATCTCGCCCCGATGGGCGTGTCGGT-CGAGGCTCGGACGTGCAGAGTGGCCCGTCGTGCCCGCCGGCGCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGTGCCGACGGACAACAATGGGTGGATGGAACGAGGCCTGCGTTGTGCCGTGCTGGCCCGAGAGAAGATCACGGCCCCC-GAGGCGAGAGATCCCAGCCCATGCGCCGACGGCAGCCA-CCGGCGGCGGCTTGGAATGCGACCCCAGGATGGGCGAGGCCACCCGCCGAGTTTAAGCATATCAATAAGCG001001011001000100001 Hexalectris_spicata_var_spicata_266 ????????????????????????TTGTCGAGACCGAAATAAAACATCGAGCGACTCGGAGAACCCGTGCATCGGCGAAGGCGGCCGCTGCCGCCGCGCAGCATCCGT-CCCGGTCGCGGCCTCAT???GGGGGCGGCCGCGATGGAGGATGGATGAGACACCCAAACCGGCGCAGCCACGCGCCAAGGGAGAATATCGAGAAAACCCGAGCCC-GCGTC--GGGCTCGGTGGCCCGGCGTGCCGTCGCACGCCGAAGGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCGAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCCAGC--TCCATCTCGCCCCGATGGGCGTGTCGGT-CGAGGCTCGGACGTGCAGAGTGGCCCGTCGTGCCCGCCGG{CT}GCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGTGCCGACGGACAACAATGGGTGGATGGAACGAGGCCTGCGTTGTGCCGTGCTGGCCCGAGAGAAGATCACGGCCCCC-GAGGCGAGAGATCCCAGCCCATGCGCCGACGGCAGCCA-CCGGCGGCGGCTTGGAATGCGACCCCAGGATGGGCGAGGCCACCCGCCGAGTTTAAGCATATCAATAAGCG001001011001000100001 Hexalectris_warnockii_265 GTAGGTGAACCTGCGGAAGGATCATTGTCGAGACCGAAATAGAATATCGAGCGATTCGGAGAACCCGTGCATCAGC---GGCGGCGGCCGCCGCCGCGCAGCATCCGT-CCCGGTCGCGGCCTCATATCGGGGGCGGCCGCGACGGAGGACGGATGAAACACTCAAACCGGCGCAGCCACGCGCCAAGGGAAAATATCGAGAAAACACGAGCCCTGCATC--GGGCTCGGTGTCCTGGCGTGCCGTTGCACGCCATAGGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCAAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCCAACTCTCCATCCCACCC-AATGGGTGTGTCGGG-CGAGGCTCGGACGTGCAGAGTGGCCCTTCGTGCCCGCGGGCGCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGCGCCCACGAACAACAAGGGGTGGATGGAACGCGGCCTACGTTGTG{CT}CGTGCTGGCCCGAGAAAAGGTCACG-CCTCC-GAGGCGAGA--TCCCGACCCATGCGCCGACGGCATCCG-CCGACGGCGGCTTGGAATGCGACCCCAGGATGGGCGAGGCCACCCGCCGAGTTTAAGCATATCAATAAGCG011000010101001101001 Hexalectris_warnockii_67 ????????????????????????TTGTCGAGACCGAAATAGAATATCGAGCGATTCGGAGAACCCGTGCATCAGC---GGCGGC{AG}GCCGCCGCCGC{AG}CAGCATCCGT-CCCGGTCGCGGCCTCATATCGGGGGCGGCCGCGACGGAGGACGGATGAAACACTCAAACCGGCGCAGCCACGCGCCAAGGGAAAATATCGAGAAAACACGAGCCC{CT}GCATC--GGGCTCGGTGTCCTGGCGTGCCGTTGCACGCCATAGGGATCGACACGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAGCGCAGCGAAATGCGATACGTGGTGCGAATTGCAGAATCCCGCGAACCATCGAGAATTTGAACGCAAGTTGCGCCCGAGGCCAGCCGGCCAAGGGCACGTCCGCCTGGGCGTCAAGCGTTGCGTCGCTCCGTGCCAACTCTCCATCCCACCC-AATGGGTGTGTCGGG-CGAGGCTCGGACGTGCAGAGTGGCCCTTCGTGCCCGCGGGCGCGGCGGGCTGAAGAGCGGGTGATCGTCTCATTGCGCCCACGAACAACAAGGGGTGGATGGAACGCGGCCTACGTTGTGTCGTGCTGGCCCGAGAAAAGGTCACG-CCTCC-GAGGCGAGA--TCCCGACCCATGCGCCGACGGCATCCG-CCG{CT}CGGCGGCTTGGAATGCGACCCCAGGATGGGCGAGGCCACCCGCCGAGTTTAAGCATATCAATAAGCG011000010101001101001 ; END; BEGIN SETS; CHARSET gapchars_all (CHARACTERS = ITS_with_INDELS_coded) = 743-763; END; [ The following blocks are output data for analysis step 5256 ] BEGIN TREES; TITLE Tb10664; LINK TAXA = TaxaForAnalysisStep5256; TREE Fig._2 = [&R] (Bletia_roezlii_32,(Hexalectris_warnockii_265,Hexalectris_warnockii_67),((Hexalectris_brevicaulis_38,(Hexalectris_grandiflora_DQ864656,Hexalectris_grandiflora_268,(Hexalectris_grandiflora_46,Hexalectris_grandiflora_273))),(((Hexalectris_nitida_270,Hexalectris_nitida_48,Hexalectris_nitida_66,Hexalectris_spicata_var_arizonica_47,(Hexalectris_spicata_var_spicata_266,Hexalectris_spicata_var_spicata_264)),Hexalectris_revoluta_var_revoluta_51),(Hexalectris_fallax_80,Hexalectris_parviflora_85,Hexalectris_revoluta_var_colemanii_166,Hexalectris_revoluta_var_colemanii_162)))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr6139] END;