#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on March 30, 2026; 13:35 GMT

TreeBASE (cc) 1994-2008

Study reference:
Hedin M., Derkarabetian S., Mccormack M., Richart C., & Shultz J. 2010. The phylogenetic
utility of the nuclear protein-coding gene EF-1a for resolving recent divergences
in Opiliones, emphasizing intron evolution. Journal of Arachnology, 38:
9-20.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S10126]

[ The following blocks are input data for analysis step 5300 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep5300;
        DIMENSIONS NTAX=4;
        TAXLABELS
            Sclerobunus_robustus_robustus_OP1122
            Sclerobunus_robustus_robustus_OP1149
            Sclerobunus_robustus_robustus_OP1164
            Sclerobunus_robustus_robustus_OP885
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M4516]

	TITLE Sclerobunus_EF1a_introns;
	LINK TAXA = TaxaForAnalysisStep5300;
	DIMENSIONS NCHAR=816;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       ]
[                                                 .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .       ]
Sclerobunus_robustus_robustus_OP1122     GTCCGCTGTTCAGACCGTTTATTGTATAATAAA-TACTGTCACAGATTTAACCAGAAAGCAAAACCGTTTTGCTTTCTGGTTAAATCTGCAAGAGTATTTTTTTTTAAATCTCTAAGATAGGAGATTTTTTTTTTTAGGGGAATGGGTTTGCATTTCTAA{AT}{AT}TTATAAAATTCAAAACTTCAAAATAATGGAATTTTAAATCTAAATTATGCTTGCCTTTCTCAA{GT}GGGCGAGGTCC{AC}CAAC{CG}CC{ACT}TTTTGTTTTCAACTT{AT}TTG{CG}CTTGG{AT}CAA{AGT}AAATTGAAACTGATTTCAAA{AT}AAGT{CT}GCCCGAAA-TGAATCG{AC}AC{ACG}CCCAC?CTC?????????????????????????????????????????????????????????TATGATAACATGAGCTGAGCCATCGGGTTTG{GT}TATTGGTATACCAAAC{GT}GACGCCTCAGCTCATGTTATCGTGCGAAAGCAAGGCTTAAATTTACTGCTCT--------GAAAATATAACCCATCCATGAGTGTGGGCTGGGTTAACGATTAATTTCTGCATACTTATTTGAAATCCGTTGGAATTTCTCGACTAAGCCAATTAGTTACAAACAAAATAGCGTCGTGACCCTCACCCATTGTAAATTCTCAATGTTAATGAGCCGAATATATGGTTTCTAATATCTTTCAAAA----CGTACATACTTGATGCATTGTAATTATTTACAAATTCC----------------------TAATTCAATCAATTTTGAACCAACATTTTCAGGCATTAACTGGTTTTGCTTGATATTTTTTCCTGCAGGTA
Sclerobunus_robustus_robustus_OP1149     GTCCGCTGTTCGAACAGTTTATTGTAAAGAAAAATACTGTCTCGGATTTAACCAGAAAGCAAAACTGTTTTGCATTCTGGTTAAATCTGTGACAGTATTTTTTT-GCTATCTCTAAGATA{CT}GAGATTTTTTTT--TAAGGAAATGGTATTGCATTTCTAATATTATA{AG}AATTCAGA-------AATAATGCAATTTTAAATCTACATAATGCTTGCCTTTCTCAATGGGTGAGGTCCACGACGCCATTTTGTTTTCAACTTATTGGCTTATTCTGGAAATTCAGACTGATTTCAAATAAGTCTCCCGAAAATTAATCGTACACCCACACTCTTGGATGGGTTATATTTTCAGAGCACTAAAGCCAAGAAGAGCTAAGCCTCGTTCTCGTACGGTAACATGAGCTGAGCCA------------TTGGTATTCCAAACTGACGCCTCAGCTCATGTTATCGTGCAAAAGCAAGGCTTAGGTTTACTGCTCTGTAGCTCTGAAAATATAGCCCATCCATGAGTGTGGGCTGGGTGTAGGATTAATTTCGGCAGACTTATTTGAAATCGGTTGGAATTTCTCGACTAAGCCAATTAGTTGAAAACAAAATAGCGTCGTGAACCTCGCCCATTGTAAATTCTCAATGTTAATGAGTCGAATATATGGCTTCTAATATCTTTCTAAA----CGTATGTAC--------TTGTAATTATTTACAAATTGCTAATTCAAACACTTGCAATTGATAATTCAATCAATTTTGAACCAACATTTTCAGGCTTTAACTGGTTTTGGTTGATATTTTTTCCTGCAGGTA
Sclerobunus_robustus_robustus_OP1164     GTCCGCTGTTCAGACCGTTTATTGTATAATAAA-TACTGTCGCAGATTTAACCAGAAAGCAAAACCGTTTTGCTTTCTGGTTAAATCTGCAAGAGTATTTTTTTTTAAATCTCTAAGATAGGAGATTTTTTTTTTTAGGGGAATGGTATTGCATTTCTAATATTATAGAATTCAGAACTTCAAAATAATGCAATTTTAAATCTAAATTATGCTTGCCTTTCTCAATGGG{CG}GAGGTCCACGACGCCATTTTGTTTTCAACTTATTGGCTTGGTCAAGAAATTCAGACTGATTTCAAATAAGTCTCCCGAAA-TTAATCGTAC{GT}CCCACACTCTTGGATGGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGATTAATTTCTGCATACTTATTTGAAATCCGTTGGAATTTCTCGACTAAGCCAATTAGTTACAAACAAAATAGCGTCGTGACCCTCACCCATTGTAAATTCTCAATGTTAATGAGCCGAATATATGGTTTCTAATATCTTTCAAAA----CGT------------------AATTATTTACAAATTGC----------------------TAATTCAATCAATTTTGAACCAACATTTTCAGGCATTAACTGGTTTTGCTTGATATTTTTTCCTGCAGGTA
Sclerobunus_robustus_robustus_OP885      GTCCGCTGTTCAGACCGTTTATTGTAAAAAAAA-TACTGTCGCAGATTTAACCAGAAAGCAAAACCGTTTTGCTTTCTGGTTAAATCTGCAAGAGTATTTTTTTTACAATCTCTGAGATAGGAGATTTTTTTT--TAAGGAAATGATATTGCATTTCTAATATTATAAAATTCAGA--------------CAATTTTAAATCTAAATTATGCTTGCCTTTCTCAATGGGTGAGGTCCACGACGCCATTTTGTTTTCAACTTATTGGCTTACTCAAGAA{AG}TTCA{GT}ACTGATTTCAAATAAATCTCCCAAAAATTAATC{AG}TACACCC{AC}CACTCTTGGATGGGTTATATTTACAGAGCAG{CT}AAAGCCAAGAAGAGCTAAGCCTGGTTCTCGTACGATAACATGAGCTGAGCCATCGGGTTTGGTATTGGTATACCAAACTGACGCCTCAGCTCATGTTATCGTGCGAAAGCAAGGCTTAAATTTACTGCTCTGT------------ATGACCCATCCAT--GTGTGGGCTGGGTTAACGATTAATTTCGGCATACTTATTTGTAATCAGTTGGAATTTCTCGACTAAGCCAATTAGTTGAAAACAAAATAGCGTCGTGAACCTCACCCATTGTAAATTCTCAATGTTAATGAGCCGAATGTATGGCTTCTAATATCTTTCAAAACGTACGTATGTACTTGATGCATTGTAATTATTTACAAATTGCTAATTCAAACACTTGCAAATAATAATTCGATCAATTTTGAACCAACATTTTCAGGCTTTAACTGGTTTTGGTTGATA--TTTTCCTGCAGGTA
;
END;

[ The following blocks are output data for analysis step 5300 ]
BEGIN TREES;
      TITLE Tb10708;
      LINK TAXA = TaxaForAnalysisStep5300;
      TREE Fig._5d = [&R] ((Sclerobunus_robustus_robustus_OP885,(Sclerobunus_robustus_robustus_OP1122,Sclerobunus_robustus_robustus_OP1164)),Sclerobunus_robustus_robustus_OP1149);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr6583]


END;