#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 19, 2025; 23:47 GMT

TreeBASE (cc) 1994-2008

Study reference:
Yurkov A., Schäfer A., & Begerow D. 2009. Barnettozyma vustinii A. Yurkov, A.M. Schäfer,
et D. Begerow, sp. nov. Persoonia, 38: 1-2.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S10179]

[ The following blocks are input data for analysis step 5422 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep5422;
        DIMENSIONS NTAX=12;
        TAXLABELS
            Barnettozyma_californica_CBS_252_T_EF550276
            Barnettozyma_californica_E_fukushimae_CBS_5782_DQ137883
            Barnettozyma_californica_H_dimennae_CBS_5762
            Barnettozyma_hawaiiensis_CBS_8760_EF550278
            Barnettozyma_populi_CBS_8094_EF550277
            Barnettozyma_pratensis_CBS_7079_EF550274
            Barnettozyma_salicaria_CBS_5456_EF550272
            Barnettozyma_sp_CBS_11554_FN428955
            Barnettozyma_wickerhamii_CBS_4107_EF550271
            Candida_montana_CBS_8057_EF550275
            Candida_norvegica_CBS_4239_EF550273
            Candida_qinlingensis_CBS_9768_AY450916
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M4534]

	TITLE Alignment_26S_mafft;
	LINK TAXA = TaxaForAnalysisStep5422;
	DIMENSIONS NCHAR=607;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                                   10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       ]
[                                                                    .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .       ]
Barnettozyma_californica_CBS_252_T_EF550276                 AAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTGCTTT-TTTAGTAGTCCGAGTTGTAATTTGAAGAATAGATCCTTG-GAGAGGCGCCTTGTCTATGTTCCTTGGAACAGGACGTCGCAGAGGGTGAGAATCCCGTTTGGCGAGGTGTGCTGATCCGTGTAAGGGC-TGTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGTTATTAGATCAGACTTGGATTTTTTATTATATTTGTCTCCTTGTGGGGCATTC-ACTAATTTTTAAT---CCAGGCCAGCATCGATTG-GGATGGCGGGAAAAAGAG-GGAGGAACGTGGCTGTGCATTTA---TGTGCAGTGTTTATAGCC-TT---TCTTAATACCGCCTGTCTCGATCGAGGACTGCGG---CAAATTTATTTTTGCCTAGGATGCTGGCGTAATGATCTAATATC
Barnettozyma_californica_E_fukushimae_CBS_5782_DQ137883     AAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTGCTTT-TTTAGTAGTCCGAGTTGTAATTTGAAGAATAGATCCTTG-GAGAGGCGCCTTGTCTATGTTCCTTGGAACAGGACGTCGCAGAGGGTGAGAATCCCGTTTGGCGAGGTGTGCTGATCCGTGTAAGGGC-TGTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGTTATTAGATCAGACTTGGATTTTTGATTATATTTGTCTCCTTGTGGGGCATTC-ACTAATTTTTAAT---CCAGGCCAGCATCGATTG-GGATGGCGGGAAAAAGAG-GGAGGAACGTGGCTGTGCATTTA---TGTGCAGTGTTTATAGCC-TT---TCTTAATACCGCCTGTCTCGATCGAGGACTGCGG---CAA----TTTTTTGCCTAGGATGCTGGCGTAATGATCTAATATC
Barnettozyma_californica_H_dimennae_CBS_5762                -----------------CTCAGT-ACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTGCTTT-TTTAGTAGTCCGAGTTGTAATTTGAAGAATAGATCCTTG-GAGAGGCGCCTTGTCTATGTTCCTTGGAACAGGACGTCGCAGAGGGTGAGAATCCCGTTTGGCGAGGTGTGCTGATCCGTGTAAGGGC-TGTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGTTATTAGATCAGACTTGGATTTTTTATTATATTTGTCTCCTTGTGGGGCATTC-ACTAATTTTTAAT---CCAGGCCAGCATCGATTG-GGATGGCGGGAAAAAGAG-GGAGGAACGTGGCTGTGC-----------------------------------------------------------------------------------------------------------------
Barnettozyma_hawaiiensis_CBS_8760_EF550278                  AAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGTTGTCTC---TGGCAGCCCGAGTTGTAATTTGAAGAAC-GGTCCTTG-GAGAGGCGCCTTGTCTATGTTCCTTGGAACAGGACGTCGCAGAGGGTGAGAATCCCGTTTGGCGAGGTGTGCTGATCCGTGTAAGGGC-TGTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGTTATTAGATCAGACTTAGG-GTGGAGTTATACTTGTCCCCTTGTGGGGCATTC-ACTAGCTCCATGT---CTAGGCCAGCATCGATTGTTTGTGGCCGGAAAAGGGGCGGAGGAATGTGGCTGTGCCCTTAGCTGGTGCAGTGTTTATAGCCTCT---GCCTTATGCGGCCTAGCTCGATCGAGGACTGCGG---CTG---TCTAACAGCCTAGGATGCTGGCGTAATGATCTAATATC
Barnettozyma_populi_CBS_8094_EF550277                       AAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGTCTTCCTGCGCGGAGGCCCGAGTTGTAATTTGAAGAAG-GGTTCTTG-GAGAGGCGCCTTGTCTATGTTCCTTGGAACAGGACGTCGCAGAGGGTGAGAATCCCGTTTGGCGAGGTGTGCTGATCCGTGTAAGGGC-CGTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTG?AAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGTTATTAGATCAGACTTGGG-CGGGAGCTATACTTGTCCTCTTGTAGGGCATTC-ACTAGCTGTCTGTTACCCGGGCCAGCATCGATTGGGGATGGCGGGAAAAAGAGCGGGGGAACGTGGCTGGGCCCTCTGT-GGCGCAGTGTTTATAGCCCCTGGTTTCGCATACCGCCTGGCTCGATCGAGGACTGCGG---CTT----TCATTAGCCTAGGATGCTGGCGTAATGATCTAATATC
Barnettozyma_pratensis_CBS_7079_EF550274                    AAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGTACTTTC-----AGTATCCGAGTTGTAATTTGAAGATG-TTCCTTTG-GGGAGGCGCCTTGTCTATGTTCCTTGGAACAGGACGTCGCAGAGGGTGAGAATCCCGTGTGATGAGGC-TGCTGACCTATGTAAAGGT-TCATCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTATACTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGTTATTAGATCAGACTTGGTGGTGTGGGCATACTTGTCCTCTTGTAGGGCATTC-ACTGAC---CACGCA-CTGGGCCAGCATCGATTC-GTGCGGCGGGACAATGGC-GATTGAATGTGGCTGCT---------TCTGCAGTG-TTATAGCT-TT---CGCTGATACCGCCTGTGTGGATCGAGGACTGCGT---CAA---TTTTATTGACTAGGATGCTGGCGTAATGATCTAATATC
Barnettozyma_salicaria_CBS_5456_EF550272                    AAACCAACCGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCGGGCTTAGATGACCGTCCGAGTTGTAATTTGAAGAGC-GGTCTTTG-GAGAGGAACCTTGTCTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAACCCCGTGAGATGAGGGATACCGATCTGTGTAAAGGC-TGTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGTTATTAGATCAGACTTGGT-GTGTGCGGATATTTGTTCTCTTGTAGGGCATTC-ACTGCG---CATGCG-CTGGGCCAGGGTGGATTTTTCGGGGCGGGATAAGAGCGGTGGGAAAGTGGCTTTGCCGAATTT-GGGAAAGTG-TTATAGCCTGC---CGCGGATGCCGCCACCGGGGATCGAGGAATGCGCGGGCCTTTGTTGGGTCAGCTAGGATCCTGGCGTAATGATCTAATATC
Barnettozyma_sp_CBS_11554_FN428955                          AAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCTGTTCT-----GCAGCCCGAGTTGTAATTTGAAGAAC-GGTTCTTG-GAGAGGCGCCTTGTCTATGTTCCTTGGAACAGGACGTCGCAGAGGGTGAGAATCCCGTTTGGCGAGGTGTGCTGATCCGTGTAAGGGC-CGTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGTTATTAGATCAGACTTGGA-CGGGAGCTATACTTGTCCCCTTGTGGGGCATTC-ACTAGCTGCCATT---CCAGGCCAGCATCGATTGGGGGCGGCGGGAAAAAGAG-GGAGGAATGTGGCTCGTGCTTCTGCGCGT---GTGTTTATAGCC-TC---TCTTCATACCGCCTGGCCCGATCGAGGACTGCGG---CCG------TAAGGCCTAGGATGCTGGCGTAATGATCTAATATC
Barnettozyma_wickerhamii_CBS_4107_EF550271                  AAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTGAAATCTGGCACCCTC-----GGTGTCCGAGTTGTAATTTGAAGGCT-GGTCTCTG-GCGAGGCGCCCCGTCTATGTTCCTTGGAACAGGACGTCGCAGAGGGTGAGAATCCCGTGTGATGGG?G-CGCCGAGCTATGTAGAGGC-CTGCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTATACTCCATCTAAAGCTAAATACTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGTTATTGGATCAGACTTGGCGGTGTGCTCATACCTGTTCCCTTGTGGAGCGGGCTACTGGG---CGCTCG-CTGGGCCAGCATCGATTC-GTGCGGCGGGACAATGGCTTGGGGAATGTGGCTGCTTACCTTT?G?GGGCAGTG-TTATAGCC-CC---?GCTGATGCCGCCTGTGTGGATCGAGGACTGCGT---CTC-----TCTGAGACTAGGATGCTGGCGTAATGATCCAATATC
Candida_montana_CBS_8057_EF550275                           AAACCAACAGGGATTACCTTAGTAACGGCGAGTGAAGCGGTAAAAGCTCAAATTTGAAATCTGGTAGCCTT-----GCTGCCCGAGTTGTAATTTGAAGACG-TGTCTTTG-GGGACGGGTCTTGTCTATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTCTGATGAGAC-CTCTGAACCGTGTAAAGGCGCTGTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTG?AAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGTTATTAGATCAGACTTGGCTGCATT-GTATATTGTTTCCCTTGTGGATTCATC-ACTACATTGTGTG---CTGGGCCAGCATCGATTC-GTGCGGCAGGACAAAAGC-CTGGGAATGTGGCTGCGCCTTTCGG-GGCGTAGTG-TTATAGCCCTG---TGCCAATACTGCCAGCGTGGATCGAGGAATGCGT---CTT-------TTAGACTAGGATGCTGGCGTAATGATCTAATATC
Candida_norvegica_CBS_4239_EF550273                         AAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCAGCCTC-----GCTGTCCGAGTTGTAATTTGAAGATT-TCTCTTTGTGAGAGGCGCCTTGTCTATGTTCCTTGGAACAGGACGTCGCAGAGGGTGAGAATCCCGTGTGATGAGGC-CGCCGATCCGTGTAAAGAG-TCATCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAACTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGTTATTAGATCAGACTTGGCGGCGCG-CCATACCTGTCCTCTTGTAGGGCGGAC-ACTGGCGCGTGTTTG-CTGGGCCAGCATCGATTC-GGGCGGCGGGACATGGTCCTGTGGGATGTGGCTGTTT--------AACACAGTG-TTATAACCACG---GGTCTCTGCCGCCTGCCTGGATCGAGGACTGCGT---CTG----TTTACAGACTAGGATGCTGGCGTAATGATCTAATATC
Candida_qinlingensis_CBS_9768_AY450916                      AAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGTACTTTC-----AGTATCCGAGTTGTAATTTGAAGATG-TTCCTTTG-GGGAGGCGCCTTGTCTATGTTCCTTGGAACAGGACGTCGCAGAGGGTGAGAATCCCGTGTGATGAGGC-TGCTGACCTATGTAAAGGT-TCATCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTATACTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGTTATTAGATCAGACTTGGTTGTGTGGTCATACTTGTCCTCTTGTAGGGCATTC-ACTGAC---CACTCACCTGGGCCAGCATCGATTC-GTGCGGCGGGACAATGGC-GATTGAATGTGGCTGCGATTTTTT--GTTGCAGTG-TTATAGCT-TT---CGCTGATACCGCCTGTGTGGATCGAGGACTGCGT---CAA----TTTATTGACTAGGATGCTGGCGTAATGATCTAATATC
;
END;

BEGIN CODONS;
CODONPOSSET  CodonPositions (CHARACTERS = Alignment_26S_mafft) = 
		N: 1-607;
CODONPOSSET * CodonPositions (CHARACTERS = Alignment_26S_mafft) = 
		N: 1-607;
END;
[ The following blocks are output data for analysis step 5422 ]
BEGIN TREES;
      TITLE Tb10830;
      LINK TAXA = TaxaForAnalysisStep5422;
      TREE Tree_1 = [&R] ((Barnettozyma_hawaiiensis_CBS_8760_EF550278,((Barnettozyma_sp_CBS_11554_FN428955,Barnettozyma_populi_CBS_8094_EF550277),(Barnettozyma_californica_E_fukushimae_CBS_5782_DQ137883,(Barnettozyma_californica_H_dimennae_CBS_5762,Barnettozyma_californica_CBS_252_T_EF550276)))),(((Barnettozyma_wickerhamii_CBS_4107_EF550271,(Barnettozyma_pratensis_CBS_7079_EF550274,Candida_qinlingensis_CBS_9768_AY450916)),(Candida_montana_CBS_8057_EF550275,Barnettozyma_salicaria_CBS_5456_EF550272)),Candida_norvegica_CBS_4239_EF550273));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5990]


END;