#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 23:46 GMT TreeBASE (cc) 1994-2008 Study reference: Beck J., Windham M., Yastkievych G., & Pryer K. 2010. A Diploids-First Approach to Species Delimitation and Interpreting Polyploid Evolution in the Fern Genus Astrolepis (Pteridaceae). Systematic Botany, 35(2): 223-234. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10191] [ The following blocks are input data for analysis step 5442 ] BEGIN TAXA; TITLE TaxaForAnalysisStep5442; DIMENSIONS NTAX=17; TAXLABELS Argyrochosma_fendleri Astrolepis_cochisensis_chihuahuensis_ChavesNM Astrolepis_cochisensis_chihuahuensis_EddyNM Astrolepis_cochisensis_chihuahuensis_Texas Astrolepis_deltoidea_Guatemala Astrolepis_deltoidea_Guerrero Astrolepis_deltoidea_Hidalgo Astrolepis_laevis_Oaxaca Astrolepis_laevis_Sinaloa Astrolepis_obscura_Guanajuato Astrolepis_obscura_Queretaro Astrolepis_sinuata_mexicana_Mexico Astrolepis_sinuata_mexicana_Texas Paragymnopteris_marantae Pellaea_pringlei Pellaea_sagittata Pellaea_truncata ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M4641] TITLE 'trnG-trnR'; LINK TAXA = TaxaForAnalysisStep5442; DIMENSIONS NCHAR=1226; FORMAT DATATYPE=Standard SYMBOLS= "A C G T 0 1 2 3 4 5" MISSING=N GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Argyrochosma_fendleri TGTGATTCGTTTCGTAGCGATTTTGGTAGTTGAGG-ATCTTCCAAACCGGATCTCGACCAAATCGGCTGAAAAAC-CTTTATTTTTGCAGAAGTAAATATGTGTCTTTCTACTCCTTTTCTGGTGTTAGGGGGAAATTCATCAATCCCGTCACTCATCTACTTCGGAAGCTATAGAAGTTGGTGACGAAGCAGAATTGTATCAGCACCCCGAGAAATACTTGGGTTAATTTATACCCCCAGGAAAAAAAGAAGAATCTATGGGTAGACGTCTAAGATATCTGTGTCATCGTCACTGAACCTTGGAGAAAACTCTGAGAGAAAAAGTTCAAAAGAATCAATCCTGGTTTGCCAGGGTTGTTGAATACTTA------CTTGGTTGAACAGCATCTACTGCTTCAACGACTCGGTGGGAAATATTTCCCTAAGGATTTTTT---ATAAAAAAAGAAATAAGGAACGAATTAAAGGGAAGGATCTGTAACAATAAATTTCCTCCCAAGGGATCATCTGAGAAGTATATCCTTGGTGTACGGCATACAACTGGGATACATACAAAACCGACATAGATGCTACGAGCGCCTTTCGCTTTCTAGAAGCGAAATTAGTCCTTTCCC-CCTTAGTTGGG-----GAAAATAGTCTTTGTGAAACGTGAAGTCTGGGAACCCCGTGTTTCACACTGAAGTAGGGTAGTCGA---------CTTGCCCCCTTTAAGTGAAA-----TGAGGGGAAGCAGCCACTGCCACAGCTCTTCTTTAAAAAGTTTGTATAATTGAGTAGACGTATTAGGCAAATCTCAACTAATTCCAAACCAAAATTATCCCATAAAGGAGCCGAATGGGCCGAAACGTCCAAGTTCGGTTCTGAATTAGCGGTGCCATGATTATTTGTTGGCATCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTATTCCTTAT-------GCTGGTAATACTCCTCGCAAT-----ACTGCAGCCCCTCCTCTGGAGAATCAAACTAATATTCTATCCGCC--------------------------------------AACTATATCGTGAACAAACAAGAGCTTTCGTCTGTTCACGATTCGGCGAATTCATACATAAGTGCATGAGACTTTAATTGGGAAA--CAGGTGGGGGGGAG---GTGAAAGAAAGATA01100010010100NN Astrolepis_cochisensis_chihuahuensis_ChavesNM --------------TAGCAATTTGGGTAGTTGAGGGATCTTCCAAACCGGATCTCGACCAAATTGGCTGAAAAAA-CTTTATTTTTGCAGAAGTAAATATGTGTCTTTCTACTACTTTTCTGGTGTTAGGGGGAAATTCATCAATCCCGTCACTCATCTACTTCGGAAGCTAAAGAAGTTGGTGACGAAGCAGAATTGTATCAGTACCCCGAAAAATACTTGGGTTAATTTAAACACCCAGGAAAAGGAA--GAATCTATGGGTAGACGTCTAAGATATCTGTGTCATCGTCACTGAACCTTGGAGAAAACTCTGAGAGAGAAAGTTCAAATGAATCAATCCTGGTTTGCCAGGATTGTTGAATATTTA------CTTGGTTGAGCAGCATCCACTGCTTCAACGACTCGGTGAGAAATATCTCCCTAAGGATTTTTT---AT-AAAAAAAAAATAAGGAACGAATTAAAGGGAAGGATCTGTAACACTAAATTTCCTCCTAAGGGATCATCTGAGAAGTATATCCTTGGTATACGGCATATCGCTAGGATGCATACAAAACCGACATAGATGTTATGAGCGCCTTTCGCTTTCTAGAAGTGAAATTAGTTCTTTCCC-TCCTAGTTGGG-----AAAAAGATTCCTTGTGAAACGTGGAGTCTGGGAACCCCGTGTTTCACACTGAAGTAGAGGAGTATATCATAGGTACTTGCCCCCTTTAAGTGAAA-----TAAAGGGAAGCAGCCACTGCCCCAGCTCTTCTTTAGAAGGTTCGTCTAATTGAGTAGACGTATTAGGCAAATCTCAACTAATTTCGAACCAAAATTATCCTATAAAGGAGCCGAATGGGCCGAAACGCCCAAGTTCGGTTCTGAATTAGCGGTGCCATTATCATTTATTGGCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTATTACTCAT-------GCTGGTAATATTCCTCG---------CGTGCAGCCCCTCCTCTGAAAAGTCAAACTAATATTCTATCCGCCAACTTTGTCTCTATCCGCC-------------------GACTATGTCGTGAACAAACAAGAGCTTTTGTCTGTTCACGATTCGGCGCACTCATACACAAGTGCAAGAGACTTTAATCGGGAA--GTGGGTGGGGGGGGGGGG-TAAAAGAAAGA--010000110100N110 Astrolepis_cochisensis_chihuahuensis_EddyNM TGTGATTCGTTTCGTAGCAATTTGGGTAGTTGAGGGATCTTCCAAACCGGATCTCGACCAAATTGGCTGAAAAAA-CTTTATTTTTGCAGAAGTAAATATGTGTCTTTCTACTACTTTTCTGGTGTTAGGGGGAAATTCATCAATCCCGTCACTCATCTACTTCGGAAGCTAAAGAAGTTGGTGACGAAGCAGAATTGTATCAGTACCCCGAAAAATACTTGGGTTAATTTAAACACCCAGGAAAAGGAA--GAATCTATGGGTAGACGTCTAAGATATCTGTGTCATCGTCACTGAACCTTGGAGAAAACTCTGAGAGAGAAAGTTCAAATGAATCAATCCTGGTTTGCCAGGATTGTTGAATATTTA------CTTGGTTGAGCAGCATCCACTGCTTCAACGACTCGGTGAGAAATATCTCCCTAAGGATTTTTT---ATAAAAAAAAAAATAAGGAACGAATTAAAGGGAAGGATCTGTAACACTAAATTTCCTCCTAAGGGATCATCTGAGAAGTATATCCTTGGTATACGGCATATCGCTAGGATGCATACAAAACCGACATAGATGTTATGAGCGCCTTTCGCTTTCTAGAAGTGAAATTAGTTCTTTCCC-TCCTAGTTGGG-----AAAAAGATTCCTTGTGAAACGTGGAGTCTGGGAACCCCGTGTTTCACACTGAAGTAGAGGAGTATATCATAGGTACTTGCCCCCTTTAAGTGAAA-----TAAAGGGAAGCAGCCACTGCCCCAGCTCTTCTTTAGAAGGTTCGTCTAATTGAGTAGACGTATTAGGCAAATCTCAACTAATTTCGAACCAAAATTATCCTATAAAGGAGCCGAATGGGCCGAAACGCCCAAGTTCGGTTCTGAATTAGCGGTGCCATTATCATTTATTGGCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTATTACTCAT-------GCTGGTAATATTCCTCG---------CGTGCAGCCCCTCCTCTGAAAAGTCAAACTAATATTCTATCCGCCAACTTTGTCTCTATCCGCC-------------------GACTATGTCGTGAACAAACAAGAGCTTTTGTCTGTTCACGATTCGGCGCACTCATACACAAGTGCAAGAGACTTTAATCGGGAA--GTGGGTGGGGGGGGGGGG-TAAAAGAAAGA--010000110100N110 Astrolepis_cochisensis_chihuahuensis_Texas -------------------ATTTGGGTAGTTGAGGGATCTTCCAAACCGGATCTCGACCAAATTGGCTGAAAAAA-CTTTATTTTTGCAGAAGTAAATATGTGTCTTTCTACTACTTTTCTGGTGTTAGGGGGAAATTCATCAATCCCGTCACTCATCTACTTCGGAAGCTAAAGAAGTTGGTGACGAAGCAGAATTGTATCAGTACCCCGAAAAATACTTGGGTTAATTTAAACACCCAGGAAAAGGAA--GAATCTATGGGTAGACGTCTAAGATATCTGTGTCATCGTCACTGAACCTTGGAGAAAACTCTGAGAGAGAAAGTTCAAATGAATCAATCCTGGTTTGCCAGGATTGTTGAATATTTA------CTTGGTTGAGCAGCATCCACTGCTTCAACGACTCGGTGAGAAATATCTCCCTAAGGATTTTTT---AT--AAAAAAAAATAAGGAACGAATTAAAGGGAAGGATCTGTAACACTAAATTTCCTCCTAAGGGATCATCTGAGAAGTATATCCTTGGTATACGGCATATCGCTAGGATGCATACAAAACCGACATAGATGTTATGAGCGCCTTTCGCTTTCTAGAAGTGAAATTAGTTCTTTCCC-TCCTAGTTGGG-----AAAAAGATTCCTTGTGAAACGTGGAGTCTGGGAACCCCGTGTTTCACACTGAAGTAGAGGAGTATATCATAGGTACTTGCCCCCTTTAAGTGAAA-----TAAAGGGAAGCAGCCACTGCCCCAGCTCTTCTTTAGAAGGTTCGTCTAATTGAGTAGACGTATTAGGCAAATCTCAACTAATTTCGAACCAAAATTATCCTATAAAGGAGCCGAATGGGCCGAAACGCCCAAGTTCGGTTCTGAATTAGCGGTGCCATTATCATTTATTGGCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTATTACTCAT-------GCTGGTAATATTCCTCG---------CGTGCAGCCCCTCCTCTGAAAAGTCAAACTAATATTCTATCCGCCAACTTTGTCTCTATCCGCC-------------------GACTATGTCGTGAACAAACAAGAGCTTTTGTCTGTTCACGATTCGGCGCACTCATACACAAGTGCAAGAGACTTTAATCGGGAA--GTGGGTGGGGGGGGGGGGGTAAAAGAAAGAGA010000110100N110 Astrolepis_deltoidea_Guatemala TGTGATTCGTTTCGTAGCAATTTGGGTAGTTGAGGGATCTTTCAAACCGGATCTCGACCAAATTGACTGAAAAAA-CTTTATTTTTGCAGAAGTAAATATGTGTCTTTCTACTACTTTTCTGGTGTTAGGGGGAAATTCATCAATCCCGTCACTCATCTACTTTGGAAGCTAGAGAAGTTGGTGACGAAGCAGAATTGTATCAGTACCCCGAAAAATACTTGGGTTAATTTAGACACCCAGGAAAGGGAA--GAATCTATGGGTAGACATCTAAGATATCTGTGTCATCGTCACTGAACCTTGGAAAAAACTCTGAGAAAGAAAGTTCAAATAAATCAATCCTGGTTTGCCAGGATTATTGAATACTTA------CTTGGTTGAACCGCATCTACTGCTTCAACGACTCGGTGGGAAATATTTCCCTAAGGATTTTTTTT-AT-AAAAAAAAAATAAGGAACGAATTAAAGGGAAGGATCTGTAACACTAAATTTCCTCCTAAGGGATCATCTGAGAAGTATATCCTTGGTATACGGCATACGGCTAGGATGCATACAAAACCGACATAGATGTTATGAGCGCCTTTCGCTTTCTAAAAGCGAAATGAATTCTTTCCC-CCCTAGTTGGG-----AAAAAGATTCCTTGTGAAACGTGGAGTCTGAGAACCCCGTGTTTCACACTGAAGTAGGGGAGTCTATCATAGGTACTTGCCCCCTTTAAGTGAAA-----TGAAGGGAAGTAGCCACTGCCCCAGCTCTTCTTTAGAAAGTTCGTCTAAGTGAGTAGACTTACTAAGCAAATCTCAACTAATTTCGAACCAAAATTCTCCAATAAAGGAGCCGAATGGGCCGAAATGCCCAAGTTCGGTTCTGAATTAGCGGTGCCATTATCATTTATTGGCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTATTACTCAT-------GCTAGTAATATTCCTCG---------TATGCAGCCCCTCCTCTGAAAAGTCAAACTAATATTCTATCCGCC--------------------------------------GACTATGTCGTGAACAAACAAGAGCTTTCGTCTGTTCACGATTCGGCGCACTCATACATAAGTGCAAGAGACTTTAATTGGGAA--GTGGGTGGGGGGGGG----TGAAAGAAAGAGA010000110100N0NN Astrolepis_deltoidea_Guerrero -------------------ATTTGGGTAGTTGAGGGATCTTCCAAACCGGATCTCGACCAAATTGACTGAAAAAA-CTTTATTTTTGCAGAAGTAAATATGTGTCTTTCTACTACTTTTCTGGTGTTAGGGGGAAATTCATCAATCCCGTCACTCATCTACTTTGGAAGCTAGAGAAGTTGGTGACGAAGCAGAATTGTATCAGTACCCCGAAAAATACTTGGGTTAATTTAGACATCCAGGAAAGGGAA--GAATCTATGGGTAGACGTCTAAGATATCTGTGTCATCGTCACTGAACCTTGGAAAAAACTCTGAGAAAGAAAGTTCAAATAAATCAATCCTGGTTTGCCAGGATTATTGAATACTTA------CTTGGTTGAACCGCATCTACTGCTTCAACGACTCGGTGGGAAATATTTCCCTAAGGATTTTTTTT-AT---AAAAAAAATAAGGAACGAATTAAAGGGAAGGATCTGTAACACTAAATTTCCTCCTAAGGGATCATCTGAGAAGTATATCCTTGGTATACGGCATACGGCTAGGATGCATACAAAACCGACATAGATGTTATGAGCGCCGTTCGCTTTCTAGAAGCGAAATGAATTCTTTCCC-CCCTAGTTGGG-----AAAAAGATTCCTTGTGAAACGTGGAGTCTGAGAACCCCGTGTTTCACACTGAAGTAGGGGAGTCTATCATAGGTACTTGCCCCCTTTAAGTGAAA-----TGAAGGGAAGTAGCCACTGCCCCAGCTTTTCTTTAGAAAGTTCGTCTAATTGAGTAGACTTATTAAGCAAATCTCAACTAATTTCGAACCAAAATTCTCCAATAAAGGAGCCGAATGGGCCGAAACGCCCAAGTTCGGTTCTGAATTAGCGGTGCCATTATCATTTATTGGCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTATTACTCAT-------GCTAGTAATATTCCTCG---------TATGCAGCCCCTCCTCTGAAAAGTCAAACTAATATTCTATCCGCCGACTTTGTCTCTATCCGCCAACTTTGTCTCTATCCGCCGACTATGTCGTGAACAAACAAGAGCTTTCGTCTGTTCACGATTCGGCGCACTCATACATAAGTGCAAGAGACTTTAATTGGGAA--GTGGGTGGGGGGGGG----TGAAAGAAAGAGA010000110100N111 Astrolepis_deltoidea_Hidalgo -------------------ATTTGGGTAGTTGAGGGATCTTTCAAACCGGATCTCGACCAAATTGACTGAAAAAA-CTTTATTTTTGCAGAAGTAAATATGTGTCTTTCTACTACTTTTCTGGTGTTAGGGGGAAATTCATCAATCCCGTCACTCATCTACTTTGGAAGCTAGAGAAGTTAGTGACGAAGCAGAATTTTATCAGTACCCCGAAAAATACTTGGGTTAATTTAGACACCCAGGAAAGGGAA--GAATCTATGGGTAGACATCTAAGATATCTGTGTCATCGTCACTGAACCTTGGAAAAAACTCTGAGAAAGAAAGTTCAAATAAATCAATCCTGGTTTGCCAGGATTATTGAATACTTA------CTTGGTTGAACCGCATCTACTGCTTCAACGACTCGGTGGGAAATATTTCCCTAAGGATTTTTTTT-AT-AAAAAAAAAATAAGGAACGAATTAAAGGGAAGGATCTGTAACACTAAATTTCCTCCTAAGGGATCATCTGAGAAGTATATCCTTGGTATACGGCATACGGCTAGGATGCATACAAAACCGACATAGATGTTATGAGCGCCTTTCGCTTTCTAAAAGCGAAATGAATTCTTTCCC-CCCTAGTTGGG-----AAAAAGATTCCTTGTGAAACGTGGAGTCTGAGAACCCCGTGTTTCACACTGAAGTAGGGGAG------ATAGGTACTTGCCCCCTTTAAGTGAAA-----TGAAGGGAAGTAGCCACTGCCCCAGCTCTTCTTTAGAAAGTTCGTCTAAGTGAGTGGACTTACTAAGCAAATCTCAACTAATTTCGAACTAAAATTCTCCAATAAAGGAGCCGAATGGGCCGAAATGCCCAAGTTCGGTTCTGAATTAGCGGTGCCATTATCATTTATTGGCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTATTACTCAT-------GCTAGTAATATTCCTCG---------TGTGCAGCCCCTCCTCTGAAAAGTCAAACTAATATTCTATCCGCC--------------------------------------GACTATGTCGTGAACAAACAAGAGCTTTCGTCTGTTCACGATTCGGCGCACTCATACATAAGTGCAAGAGACTCTAATTGGGAA--GTGGGTGGGGGGG------TGAAAGAAAGAGA010000010100N0NN Astrolepis_laevis_Oaxaca -----------------------------------------------------TCAACCAAATTGACTGNAAAAAACTTTATTTTTGCAGAAGTAAATATGTGTCTTTCTACTACTTTTCTGGTGTTAGGGGAAAATTCATCAATCCCGTCACTCATCTACTTTGGAAGCTAGAGAAGTTGGTGACGAAGCAGAATTGTATCAGTACCCCGAAAAATACTTGGGTTAATTTAGACACCCAGGAAAGGGAA--GAATCTATGGGTAGACGTCTAAGATATCTGTGTCATCGTCACTGAACCTTGGAAAAAACTNTGAGAGAGAAAGTTCAAATGAATCAATTNTGGTTTGCCAGGATTGTTGAATACTTA------CTTGGTTGAGCAGCATCTACTGTTTCAACGACTCGGTGGGAAATATTTCCCTAAGGATTTTTTTTTAG-AAAAAAAAAATAAGGAACGAATTAAAGGGAAGGATCTGTAACACTAAATTTCCTCCTAAGGGATCATCTGAGAAGTATATCCTTGGTATACGGCATACGGCTAGGATGCATACAAAACCGACATAGATGTTATGAGCGCCTTTCGCTTTCTAGAAGCGAAATTAGTTCTTTCCC-CCCTAATCGGG-----AAAAAGATTCCTTGTGAAACGTGGAGTCTGAAAACCCCGTGTCTCACACTGAAGTAAAGGAGTCTATCATAAGTACTTGCCCCCTTTAAGTGAAA-----TGAAGGGAAGTAGCCACTGCCCCAGCTCTTCTTTAAAAGGTTCGTCTAATTGAATAGACGTATTAGGCAAATCTCAACTAATTTCGAAGCAAAATTATCCAATAAAGGAGCCGAATGGGCCGAAACGCCCAAGTTCGGTTCTGAATTAGCGGTGCCATTATCATTTATTGGCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTATTACTCAT-------GCTGGTAATATTCCTCG---------TATGCAGCCCCTCCTCTGAAAAGTCAAACTAATGTTCTATCCGCCAATTTTGTCTCTATCCGCCAACTTTGTCTCTATCCGCCGACTATGTCGTGAACAAACAAGAGCTTTCGTCTGTTCACGATTCGGCGCACTCATACATAAGTGCAAGAGACTCTAATGGGGAA--GTGGGTGGGGGGGGG----TGAAAGAAAGAGA110000110100N111 Astrolepis_laevis_Sinaloa -----------------CAATTTGGGTAGTTGAGGGATCTTCCAAACCGGATCTCAACCAAATTGACTGAAAAAAACTTTATTTTTGCAGAAGTAAATATGTGTCTTTCTACTACTTTTCTGGTGTTAGGGGAAAATTCATCAATCCCGTCACTCATCTACTTTGGAAGCTAGAGAAGTTGGTGACGAAGCAGAATTGTATCAGTACCCCGAAAAATACTTGGGTTAATTTAGACACCCAGGAAAGGGAA--GAATCTATGGGTAGACGTCTAAGATATCTGTGTCATCGTCACTGAACCTTGGAAAAAACTCTGAGAGAGAAAGTTCAAATGAATCAATTCTGGTTTGCCTGGATTGTTGAATACTTA------CTTGGTTGAGCAGCATCTACTGTTTCAACGACTCGGTGGGAAATATTTCCCTAAGGATTTTTTTTTAGAAAAAAAAAAATAAGGAACGAATTAAAGGGAAGGATCTGTAACACTAAATTTCCTCCTAAGGGATCATCTGAGAAGTATATCCTTGGTATACGGCATACGGCTAGGATGCATACAAAACCGACATAGATGTTATGAGCGCCTTTCGCTTTCTAGAAGCGAAATTAGTTCTTTCCC-CCCTAATTGGG-----AAAAAGATTCCTTGTGAAACGTGGAGTCTGAAAACCCCGTGTCTCACACTGAAGTAAAGGAGTCTATCATAAGTACTTGCCCCCTTTAAGTGAAA-----TGAAGGGAAGTAGCCACTGCCCCAGCTCTTCTTTAAAAGGTTCGTCTAATTGAATAGACGTATTAGGCAAATCTCAACTAATTTCGAAGCAAAATTCTCCAATAAAGGAGCCGAATGGGCCGAAACGCCCAAGTTCGGTTCTGAATTAGCGGTGCCATTATCATTTATTGGCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTATTACTCAT-------GCTGGTAATATTCCTCG---------TATGCAGCCCCTCCTCTGAAAAGTCAAACTAATGTTCTATCCGCCAATTTTGTCTCTATCCGCCAACTTTGTCTCTATCCGCCGACTATGTCGTGAACAAACAAGAGCTTTCGTCTGTTCACGATTCGGCGCACTCATACATAAGTGCAAGAGACTCTAATGGGGAA--GTGGGTGGGGGGGGGG---TGAAAGAA-----110000110100N111 Astrolepis_obscura_Guanajuato -------------------ATTTGGGTAGTTGAGGGATCTTCCAAACCGGATCTCAACCAAATTGACTGAAAAAAACTTTATTTTTTCAGAAGTAAATATGTGTCTTTCTACTACTTTTCTGGTGTTAGGGGGAAATTCATCAATCCCGTCACTCATCTACTTTGGAAGCTAGAGAAGTTGGTGACGAAGCAGAATTGTATCAGTACCCCGAAAAATACTTGGGTTAATTTAGACACCCAGAAAAGGGAA--AAATCTATGGGTAGACGTCTAAGATATCTGTGTCATCGTCACTGAACCTTGGAAAAAACTCTGAGAGAGAAAGTTCAAATGAATCAATTCTGGTTTGCCAGAACTGTTGAATACTTA------CTTGGTTGAGCAGTATCTACTGCTTCAACGACTCGGTGAAAAATATTTCCCTAAGGATTTCTTTT-AGAAAAAGAAAAATAAGGAACGAATTAAAGGGAAGGATCTGTAACACTAAATTTCCTCCTAAAGGATCATCTGAGAAGTATATCCTTGGTATACGGCATACGGCTAGGATGCATACAAAACCGACATAGATGTTATGAGCGCCTTTCGCTTTCTAGAAGCGAAATTAGTTCTTTCCC-CCCTAGTTGAG-----AAAAAGATTCTTTGTGAAACGTGGAGTCTGAAAACCCCGTGTTTCACACTGAAGTAGGGGAGTCTATCATAAGTACTTGCCCCCTTTAAGTGAAA-----TGAAGGGAAGTATCCACTGTCCCAGCTCTTCTTTAAAAGGTTCGTCTAATTGAATAGACGTATTAGGCAAATCTCAACTAATTTCGAAGCAAAATTCTCCAATAAAGGAGCCGAATGGGCCGAAAAGCCCAAGTTCGGTTCTGAATTAGCGGTGCCATTATCATTTATTGGCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTATTACTCATTACTCATGCTGGTAATATTCCTCG---------TATACAGCCCCTCCTCTGAAAAGTCAAACTAATGTTCTATCCGCCGATTTTGTCTCTATCCGCC-------------------GACTATGTCGTGAACAAACAAGAGCTTTCGTCTGTTCACGATTCGGTGCACTCATACATAAGTGCAAGAGACTCTAATGGGGAA--GTGGGAGGGGGGGGG----TGAAAGAAAGAGA110000110110N110 Astrolepis_obscura_Queretaro -------------------ATTTGGGTAGTTGAGGGATCTTCCAAACCGGATCTCAACCAAATTGACTGAAAAAAACTTTATTTTTGCAGAAGTAAATATGTGTCTTTCTACTACTTTTCTGGTGTTAGGGGGAAATTCATCAATCCCGTCACTCATCTACTTTGGAAGCTAGAGAAGTTGGTGACGAAGCAGAATTGTATCAGTACCCCGAAAAATACTTGGGTTAATTTAGACACCCAGAAAAGGGAA--AAATCTATGGGTAGACGTCTAAGATATCTGTGTCATCGTCACTGAACCTTGGAAAAAACTCTGAGAGAGAAAGTTCAAATGAATCAATTCTGGTTTGCCAGAACTGTTGAATACTTA------CTTGGTTGAGCAGTATCTACTGCTTCAACGACTCGGTGGAAAATATTTCCCTAAGGATTTCTTTT-AGAAAAAGAAAAATAAGGAACGAATTAAAGGGAAGGATCTGTAACACTAAATTTCCTCCTAAAGGATCATCTGAGAAGTATATCCTTGGTATACGGCATACGGCTAGGATGCATACAAAACCGACATAGATGTTATGAGCGCCTTTCGCTTTCTAGAAGCGAAATTAGTTCTTTCCC-CCCTAGTTGAG-----AAAAAGATTCTTTGTGAAACGTGGAGTCTGAAAACCCCGTGTTTCACACTGAAGTAGGGGAGTCTATCATAAGTACTTGCCCCCTTTAAGTGAAA-----TGAAGGGAAGTAGCCACTGTCCCAGCTCTTCTTTAAAAGGTTCGTCTAATTGAATAGACGTATTAGGCAAATCTCAACTAATTTCGAAGCAAAATTCTCCAATAAAGGAGCCGAATGGGCCGAAAAGCCCAAGTTCGGTTCTGAATTAGCGGTGCCATTATCATTTATTGGCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTATTACTCATTACTCATGCTGGTAATATTCCTCG---------TATACAGCCCCTCCTCTGAAAAGTCAAACTAATGTTCTATCCGCCGATTTTGTCTCTATCCGCC-------------------GACTATGTCGTGAACAAACAAGAGCTTTCGTCTGTTCACGATTCGGTGCACTCATACATAAGTGCAAGAGACTCTAATGGGGAA--GTGGGAGGGGGGGGG----TGAAAGAAAGAGA110000110110N110 Astrolepis_sinuata_mexicana_Mexico -------------------ATTTGGGTAGTTGAGGGATCTTCCAAACCGGATCTTGACCAAATTGACTGAAAAAA-CTTTATTTTTGCAGAAGTAAATATGTGTCTTTCTACTACTTTTCTGGTGTTAGGGGGAAATTCATCAATCCCGTCACTCATCTACTTTGGAAGCTAGATAAGTTGGTGACGAAGCAGAATTGTATCAGTACCCCGAAAAATACTTGGGTTAATTTAGACACCCAGGAAAGGGAA--GAATCTATGGGTAGACGTCTAAGATATCTGTGTCATCGTCACTGAACCTTGGAAAAAACTCTGAGAAAGAAAGTTCAAATAAATCAATCCTGGTTTGCCAGGATTATTGAATACTTA------CTTGGTTGAACAGCATCTACTGCTTCACCGACTCGGTGGGAAATATTTCCCTAAGGATTTTTTT--AT-AAAAAAAAAATAAGGAACGAATTAAAGGGAAGGATCTGTAACACTAAATTTCCTCCTAAGGGATCATCTGAGAAGTATATCCTTGGTATACGGCATACGGCTAGGATGCATACAAAACCGACATAGATGTTATGAGCGCCTTTCGCTTTCTGGAAGCGAAATGAATTCTTTCCC-CCCTAGTTGGGTTGGGAAAAAGATTCCTTGTGAAATGTAGAGTCTGAGAACCCCGTGTTTCACACTGAAGTAGGGGAGTCTATCGTAGGTACTTGCCCCCTTTAAGTGAAA-----TGAAGGGAAGTAGCCACTGCCCCAGCTCTTCTTTAGAAGGTTCGTCTAATTGAGTAGACTTATTAAGCAAATCTCAACTAATTTCGAACCAAAATTCTCCAATAAAGGAGCCGAATGGGCCGAAACGCCCAAGTTCGGTTCTGAATTAGCGGTGCCATTATCATTTATTGGCATCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTATTACTCAT-------GCTAGTAATATTCCTCG---------TATGCAGCCCCTCCTCTGAAAAGTCAAACTAATATTCTATCCGCCGACTTTGTCTCTATCCGCCAACTTTGTCTCTATCCGCCGACTATGTCGTGAACAAACAAGAGCTTTCGTCTGTTCACGATTCGGCGCACTCATACATAAGTGCAAGAGACTTTAATTGGGAA--GTGGGTGGGGGGGGGGGG-TAAAAGAAAGAGA010001110100N111 Astrolepis_sinuata_mexicana_Texas TGTGATTCGTTTCGTAGCAATTTGGGTAGTTGAGGGATCTTCCAAACCGGATCTCGACCAAATTGACTGAAAAAA-CTTTATTTTTGCAGAAGTAAATATGTGTCTTTCTACTACTTTTCTGGTGTTAGGGGGAAATTCATCAATCCCGTCACTCATCTACTTTGGAAGCTAGATAAGTTGGTGACGAAGCAGAATTGTATCAGTACCCCGAAAAATACTTGGGTTAATTTAGACACCCAGGAAAGGGAA--GAATCTATGGGTAGACGTCTAAGATATCTGTGTCATCGTCACTGAACCTTGGAAAAAACTCTGAGAAAGAAAGTTCAAATAAATCAATCCTGGTTTGCCAGGATTATTGAATACTTA------CTTGGTTGAACAGCATCTACTGCTTCACCGACTCGGTGGGAAATATTTCCCTAAGGATTTTTTT--AT-AAAAAAAAAATAAGGAACGAATTAAAGGGAAGGATCTGTAACACTAAATTTCCTCCTAAGGGATCATCTGAGAAGTATATCCTTGGTATACGGCATACGGCTAGGATGCATACAAAACCGACATAGATGTTATGAGCGCCTTTCGCTTTCTGGAAGCGAAATGAATTCTTTCCC-CCCTAGTTGGGTTGGGAAAAAGATTCCTTGTGAAATGTAGAGTCTGAGAACCCCGTGTTTCACACTGAAGTAGGGGAGTCTATCGTAGGTACTTGCCCCCTTTAAGTGAAA-----TGAAGGGAAGTAGCCACTGCCCCAGCTCTTCTTTAGAAGGTTCGTCTAATTGAGTAGACTTATTAAGCAAATCTCAACTAATTTCGAACCAAAATTCTCCAATAAAGGAGCCGAATGGGCCGAAACGCCCAAGTTCGGTTCTGAATTAGCGGTGCCATTATCATTTATTGGCATCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTATTACTCAT-------GCTAGTAATATTCCTCG---------TATGCAGCCCCTCCTCTGAAAAGTCAAACTAATATTCTATCCGCCGACTTTGTCTCTATCCGCCAACTTTGTCTCTATCCGCCGACTATGTCGTGAACAAACAAGAGCTTTCGTCTGTTCACGATTCGGCGCACTCATACATAAGTGCAAGAGACTTTAATTGGGAA--GTGGGTGGGGGGGGGG---TAAAAGAAAGAGA010001110100N111 Paragymnopteris_marantae --------------------------------------------AACCGGATCTCGACCAAATTGGCTGAAAAAC-CTTTATTTTTGCAGAAGTAAATATGTGTCTTTCTACTACTTTTCTGGTGTTAGGAGAAAATTTATCAATCCCGTCACTCATCTACTTCGGAAGCTAAAGAAGTTGGTGACGAAGCAGAATTATCTCAGTACCCCGAGAAATACTTGGGTTAATTTATACCCCCAGGAAAGGGAA--GAATCTATGGGTAGACGTCTAAAATATCTGTGTCATCGTCACTGAACCTTGGAGAAAACTCTGAGAGAGAAAGTTCAAATGAATCAATTCTGGTTTGCCAGGATTGTTGAATACTTA------CTTGGTTGAGCAACATCCACTGCTTCAACGACTCGGTGGGAAATATTTCCCTAAGGATTTTTT---AT-TTATAAAAAATAAGGAACGAATTAAAGGGAAGGATCTGTAACAATAAATTTCCTCCCAAGGGATCATCTGAGAAGTATATCCTTGGTATACGGCATACGGCTAGGATGCATACAAAACCGACATAGATGCTACGAGGGCCTTTCGCTTTCTGGAAGCGAAATTAGTTCTTTCCC-CCCTAGTTGGA-----AAAAAGATTCCTTGTGAAACGTGGAGTCTGGGAACCCCGTGTTTCACACTGAAGTTGAGGAGTCGATCATAGTTACTTGCCCCCTTTAAGTGAAA-----TGAGGGGAAGCAGCCACTGCCCCAGCTCTTCTTTAGAAGGTT----------------------AAGCAAATCTCAACTAATTTCGAACGAAAATTCTCCCATAAAGGAGCCGAATGGGCCGAAACGTCCAAGTTCGGTTCTGAATTAGCGGTGCCATGATCATTTGTTGGCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTATTACTTAT-------GCTGGTAATACTCCTCGTAAT-----ACTGCAGCCCCTCCTCTGGAGAGTCAAACTAATATTCTATCCGCC--------------------------------------GGCTATGTCGTGAACAAACAAGAGCTCTCGTCTGTTCACGATTCGGCGCACTCATACATAAGTGCACGAGACTTAAATCGG-------------------------------------01000011000100NN Pellaea_pringlei TGTGATTCGTTTCATAGCAATTTTGGTAGTTGAGGGATCTTCCAAACCGGATCTCGACCAAGTTGGCTGAAAAAA-CTTTATTTATGTATAAGTAAATATGTGTGTTTCTACTACTTTTCTGGTGTTAGGGGGAAATTCATCAATCTCGTCACTCATCTACTTCGTAAGCGAGAGAAGTTGGTAACGAAGCAGAATTGTATAAGTACCCCGAAAAATACTTGGGTTAATTTATACCCCCAGGAAAGGAAA--GAATCTATGGGTAGACATCTAAGATATCTGTGTCATCGTCACTGAACCTTGGAGAAAACTCTGAGAGAGAAAGTTCAAATGAATCAATCCTGGTTTGCCAAGATTGTCGAATACTTATACTTACTTGGTTGAGCAGCATCCACTGCTTCAACGACTCGGTGGAAAATATTTACCTAAGGATTTTTTTTAAT-AAAAAAAAAATAAGGAACGAATTAAAGGGAAGGATCTGTAACACTAAATTTCCTCCCAAGGGATCATCTGAGAAGTATATCCTTGGTATACGGCATATGGCTAGGATGCATACAAAACCGACATAGATGTTATGAGCATCTTTCGCTTTCTAGAAGCGAAATTAGTTCTTTCCCCCTCTAGTTGGG-----AAAAAAATTCCTTGTGAAATGTGGAGTCTGGGAACCCCGTGTTTCACACTGAAGTAGGGGAGTCTATCATAAGTATTTGCCCACTTTAAGTGAAA-----TGAGGGGAAACAGCCACTGTCCCAGCTCTTCTTTAGAAGGTTCTACTAATTGAGTAGACCTATTAGGTAAATCTCAACTAATTTCAAACCGAAATTCTCCCATAAAGGAGCCGAATGGGCCGAAACGTCCAAGTTCGGTTCTGAATTAGCGGTGCCATGATCATTTGTTGGCATCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTATTACTTAT-------GCTGGTAATACTCCTCGTAATATAATACTGCAGTCACTGCTATGAAAAGTCAAACTAATACTCTATCCGCTAACTTTGTCTCTATCCACC-------------------GACTGTATCGTGAACAAACAAGAGCTTTCGTTTGTTCACGATTCAGCGTACTCATACATAAGTGTAAGAGACTTAAATTGGGAA--GCGGGTGGGAGGGAAGGGGGGGGCGAAAGAA-0101101101011110 Pellaea_sagittata TGTGATTCGTTTCATAGCGATTTTGGTAGTTGAGGGATCTTCCAAACCGGATCTCGACCAAATTGGCTGAAAAAA-CTTTATTTATGTATAAGTAAATATGTGTCTTTCTACTACTTTTCTGGTGTTAGGGGGAAATTCATCAATCTCGTCACTCATCTACTTCGGAAGCTAGAGAAGTTGGTAACGAAGCAGAATTGTATCAGTACCCCGAAAAATACTTGGGTTAATTTAA-CCCCCAGGAAAGGAAA--GAATCTATGGGTAGACATCTAAGATATCTGTGTCATCGTCACTGAACCTTGGAGAAAACTCTGAGAGAAAAAGTTCAAATGAATCAATCCTGGTTTGCCAAGATTGTTGAATACTTA------CTTGGTTGAGCAGCATTCACTGCTTCAACGACTCGGTGGGAAATATTTACCTAAGGATTTTTTTTAAT--AAAAAAAAATAAGGAACGAATTAAAGGGAAGGATCTGTAACACTAAATTTCCTCCCAAGGGATCATCTGAGAAGTATATCCTTGGTATACGGCATACGGCTAGGATGCATACAAAACCGACATAGATGTTATGAGCATCTTTCGCTTTCTAGAAGCGAAATTAGTTCTTTCCCCCTCTAGTTGGG-----AAAAAAATTCCTTGTGAAACGTGGAGTCTGGGAACCCCGTGTTTCACACTGAAGTAGGGGAGTCTATCATAAGTATTTGCCCACTTTAAGTGAAA-----TGAGGGGAAACAGCCACTGTCTCAGCTCTTCTTTAGAAGATTCGTCTAATTGAGTAGACGTATTAGGCAAATCTCAACTAAATTCAAACCAAAATTCTCCCATAAAGGAGCCGAATGGGCCGAAACGTCCAAGTTCGGTTCTGAATTAGCGGTGCCATGATCATTTGTTGGCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTATTACTTAT-------GCTGGTAATACTCCTCGTAATATAATACTGCAGCCACTGCTATGAAAAGTCAAACTAATAATCTATCCGCTAACTTTGTCTCTC-------------------------AACTGTATCGTGAACAAACAAGAGCTTTCGTTTGTTCACGATTCGGCGCACTCCTACATAAGTGCAAGAGACTTAAATTGGGAA--GCGGGTGGGAGGGAAGGGGGGGTCGAAAGAA-000010110101110N Pellaea_truncata TGTGATTCGTTTCGTAGCGATTTCGGTAGTTGAGGGATCTTCCAAACCGGATCTCGACCAAATTGGCTGAAAAAA-CTTTATTTTTGTAAAAGTAAATATGTGTCTTTCTACTACTTTTCTGGTGTTAGGGGGAAATTCATCAATCCCGTCACTCATCTACTTCGGAAGCTAGAGAAGTTGGTGACGAAACAGAATTGTATCAGTACCCCGAAAAATACTTGTGTTAATTTAGACCCCCAGGAAAGGGAA--GAATCTATGGGTAGACGTCTAAGATATCTGTGTCATCGTCACTGAACCTTGGAGAAAACTCTGAGAGAGAAAGTTCAAATGAATCAATCCTGGTTTGCCAGGATTGTTGAATACTTA------CTTGGTTGAGCAGCATCCACTGCTTCAACGACTCGGTGAGAAATATTTCCCTAAGGATTTTTTT--ATTTTAGAAAAAATAAGGAACGAATTAAAGGGAAGGATCTGTACCACTAAATTTCCTCCCAAGGGATCATCTGAGAAGTCTATCCTTGGTATATGGCATACGGATAGGATGCATACAAAACCGACATAGATGCTACGAGCGCCTTTCGCTTTCTAGAAGCGAAATTAGTTCTTTCCT-CCCTAGTTGGT-----AAAAAGATTCCTTGTAAAACGCGGAGTCTGGGAACCCCGTGTTTCACCCTGAAGTAAGGGAATCGATCATAGGTACTTGCCCCCTTTAAGTGAAATGAAATGAGGGGAAGCAGCCACTGCCTCAGCTCTTCTTTAGAAGGTTCGTCTAATTGAGTAGACGTATTAGGAAAATCTCAACTAATTTTGAACCAAAATTCTCCCATAAAGGAGCCGAATGGGCCGAAACGTCCAAGTTCGGTTCTGAATTAGCGGTGCCATGACCATTTCTTGGCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTATTACTTAT-------GCTGGTAATACTCCTCGTAAT-----ACTGCAGCCCCTCCTCTGGAAAGTCAAACTAATATTCTATCCGCC--------------------------------------GACTATGTCGTGAACAAACAAGAGGTTTCGTCTGTTCACGATTCGGCGCAGTCATACAGAAGTGCAAGAGACTTTAATTGGGAAAAGCAGGTGGGGGGGGG----TGAAAGAAAGAGA01000011110100NN ; END; BEGIN SETS; CHARSET JUNK (CHARACTERS = 'trnG-trnR') = 1-53 439-448 618-622 1010-1011 1174-1210; END; [ The following blocks are output data for analysis step 5442 ] BEGIN TREES; TITLE Tb10850; LINK TAXA = TaxaForAnalysisStep5442; TREE Fig._3 = [&R] ((Paragymnopteris_marantae,Argyrochosma_fendleri),(Pellaea_truncata,((Pellaea_pringlei,Pellaea_sagittata),((Astrolepis_cochisensis_chihuahuensis_EddyNM,Astrolepis_cochisensis_chihuahuensis_ChavesNM,Astrolepis_cochisensis_chihuahuensis_Texas),(((Astrolepis_sinuata_mexicana_Texas,Astrolepis_sinuata_mexicana_Mexico),((Astrolepis_deltoidea_Guatemala,Astrolepis_deltoidea_Hidalgo),Astrolepis_deltoidea_Guerrero)),((Astrolepis_obscura_Queretaro,Astrolepis_obscura_Guanajuato),(Astrolepis_laevis_Oaxaca,Astrolepis_laevis_Sinaloa))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr6131] END;