#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on November 14, 2026; 18:31 GMT

TreeBASE (cc) 1994-2008

Study reference:
Massoumi alamouti S., Kim J., & Breuil C. 2006. A new Leptographium species associated
with the northern spruce engraver, Ips perturbatus, in western Canada. Mycologia,
98(1): 149-160.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S10205]

[ The following blocks are input data for analysis step 5483 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep5483;
        DIMENSIONS NTAX=14;
        TAXLABELS
            Leptographium_abietinum_3YT5PLa
            Leptographium_abietinum_AY263182
            Leptographium_elegans
            Leptographium_fruticetum_DAOM234389
            Leptographium_fruticetum_DAOM234391
            Leptographium_lundbergii
            Leptographium_wagener
            Ophiostoma_abiocarpum_2FJ3TOA
            Ophiostoma_abiocarpum_MUCL18351
            Ophiostoma_aenigmaticum
            Ophiostoma_huntii
            Ophiostoma_penicillatum_CBS140.36
            Ophiostoma_penicillatum_UAMH9582
            Ophiostoma_piceaperdum
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M4482]

	TITLE Exon_betatubulin;
	LINK TAXA = TaxaForAnalysisStep5483;
	DIMENSIONS NCHAR=550;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                               10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550]
[                                                .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]
Leptographium_abietinum_3YT5PLa         GGTAACCAAATTGGTGCCGCCTTCTGGCAGCAGATTTCCGGCGAGCACGGCCTTGACAGCAGTGGCGTGTACAATGGCACCTCTGAGCTCCAGCTGGAGCGCATGAGCGTGTACTTCAACGAGGCTTCTGGCAACAAGTATGTTCCCCGCGCCGTCCTCGTGGATCTCGAGCCCGGCACGATGGACGCCGTCCGTGCCGGCCCGTTCGGCCAGCTCTTCCGTCCCGACAACTTCGTCTTTGGCCAGTCGGGTGCCGGCAACAACTGGGCCAAGGGTCACTACACCGAGGGTGCTGAGCTTGTTGACCAGGTCCTGGACGTCGTCCGCCGCGAGGCTGAGGGCTGCGACAGCCTGCAGGGTTTCCAGATTACCCACTCGCTGGGTGGTGGTACCGGTGCCGGTATGGGTACTCTCCTGATCTCGAAGATCCGTGAGGAGTTCCCTGATCGGATGATGGCTACCTTCTCGGTGATGCCGTCGCCAAAGGTGTCGGACACAGTTGTTGAGCCGTACAACGCGACGCTGTCGGTGCACCAGCTGGTGGAGAACT
Leptographium_abietinum_AY263182        GGTAACCAAATTGGTGCCGCCTTCTGGCAGCAGATTTCCGGCGAGCACGGCCTTGACAGCAGTGGCGTGTACAATGGCACCTCTGAGCTCCAGCTGGAGCGCATGAGCGTGTACTTCAACGAGGCTTCTGGCAACAAGTATGTTCCCCGCGCCGTCCTCGTGGATCTCGAGCCCGGCACGATGGACGCCGTCCGTGCCGGCCCGTTCGGCCAGCTCTTCCGTCCCGACAACTTCGTCTTTGGCCAGTCGGGTGCCGGCAACAACTGGGCCAAGGGTCACTACACCGAGGGTGCTGAGCTTGTTGACCAGGTCCTGGACGTCGTCCGCCGCGAGGCTGAGGGCTGCGACAGCCTGCAGGGTTTCCAGATTACCCACTCGCTGGGTGGTGGTACCGGTGCCGGTATGGGTACTCTCCTGATCTCGAAGATCCGTGAGGAGTTCCCTGATCGGATGATGGCTACCTTCTCGGTGATGCCGTCGCCAAAGGTGTCGGACACAGTTGTTGAGCCGTACAACGCGACGCTGTCGGTGCACCAGCTGGTGGAGAACT
Leptographium_elegans                   GGTAACCAAATCGGTGCTGCTTTCTGGCAGCAGATTTCGAGCGAGCACGGTCTCGACAGCAATGGCGTGTACAACGGCACGTCCGAGCTCCAGCTGGAGCGCATGAGCGTGTACTTCAACGAGGCCTCGGGCAACAAGTACGTGCCGCGTGCTGTGCTCGTCGACCTGGAGCCCGGCACGATGGATGCTGTGCGTGCCGGTCCTTTCGGCCAGCTGTTCCGCCCAGACAACTTCGTGTTCGGCCAGTCAGGCGCCGGCAACAACTGGGCCAAGGGCCACTACACCGAGGGTGCGGAGCTGGTCGACCAGGTTCTGGACGTCGTGCGCCGCGAGGCGGAGGGCTGCGACTCCCTGCAGGGCTTCCAGATCACGCACTCGCTGGGTGGTGGTACGGGTGCCGGCATGGGCACTCTGCTGATCTCCAAGATCCGCGAGGAGTTCCCCGACCGCATGATGGCGACGTTCTCGGTGGTGCCGTCGCCCAAGGTGTCGGACACGGTGGTGGAGCCGTACAACGCGACGCTGTCGGTGCACCAGCTGGTGGAGAACT
Leptographium_fruticetum_DAOM234389     GGCAACCAAATTGGTGCCGCTTTCTGGCAGCAGATTTCCGGCGAGCACGGCCTCGACAGCAGTGGCGTGTACAATGGCACCTCTGACCTCCAGCTGGAGCGCATGAGCGTGTACTTCAACGAGGCTTCGGGCAACAAGTATGTCCCCCGCGCGGTGCTCGTCGATCTCGAGCCCGGCACCATGGATGCCGTCCGTGCCGGCCCGTTCGGCCAGCTCTTCCGTCCCGACAACTTCGTCTTTGGCCAATCGGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACCGAGGGTGCTGAGCTCGTGGACCAGGTCCTGGACGTGGTCCGCCGCGAGGCTGAGGGCTGCGACAGCCTGCAGGGTTTTCAGATCACCCACTCCCTGGGTGGTGGTACGGGTGCCGGTATGGGTACTCTCCTGATCTCGAAGATCCGTGAGGAGTTCCCCGATCGGATGATGGCTACCTTCTCGGTGATGCCGTCGCCCAAGGTGTCGGACACAGTGGTTGAGCCGTACAACGCGACGCTGTCGGTGCACCAGCTGGTGGAGAACT
Leptographium_fruticetum_DAOM234391     GGCAACCAAATTGGTGCCGCTTTCTGGCAGCAGATTTCCGGCGAGCACGGCCTCGACAGCAGTGGCGTGTACAATGGCACCTCTGACCTCCAGCTGGAGCGCATGAGCGTGTACTTCAACGAGGCTTCGGGCAACAAGTATGTCCCCCGCGCGGTGCTCGTCGATCTCGAGCCCGGCACCATGGATGCCGTCCGTGCCGGCCCGTTCGGCCAGCTCTTCCGTCCCGACAACTTCGTCTTTGGCCAATCGGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACCGAGGGTGCTGAGCTCGTGGACCAGGTCCTGGACGTGGTCCGCCGCGAGGCTGAGGGCTGCGACAGCCTGCAGGGTTTTCAGATCACCCACTCCCTGGGTGGTGGTACGGGTGCCGGTATGGGTACTCTCCTGATCTCGAAGATCCGTGAGGAGTTCCCCGATCGGATGATGGCTACCTTCTCGGTGATGCCGTCGCCCAAGGTGTCGGACACAGTGGTTGAGCCGTACAACGCGACGCTGTCGGTGCACCAGCTGGTGGAGAACT
Leptographium_lundbergii                GGCAACCAGATTGGTGCCGCTTTCTGGCAGCAGATCTCCAGCGAGCACGGTCTCGACAGCAATGGCGTGTACAATGGCACGTCTGAGCTCCAGCTCGAGCGCATGAGCGTGTACTTCAACGAGGCTTCAGGCAACAAGTACGTGCCTCGCGCCGTCCTGGTCGATCTCGAGCCCGGCACGATGGATGCCGTGCGCGCCGGTCCCTTTGGGCAGCTCTTCCGGCCTGACAACTTCGTTTTCGGCCAGTCGGGTGCCGGCAACAACTGGGCCAAGGGCCACTACACGGAGGGTGCCGAGCTTGTGGACCAGGTGCTCGACGTTGTCCGGCGCGAGGCTGAGGGCTGTGACAGCCTCCAGGGCTTCCAGATCACGCACTCGCTGGGCGGTGGCACGGGTGCCGGTATGGGCACACTGCTGATCTCGAAGATCCGCGAGGAGTTCCCCGACCGGATGATGGCCACGTTCTCGGTGGTGCCGTCGCCCAAGGTGTCGGACACAGTTGTGGAGCCGTACAACGCGACTCTGTCGGTGCACCAGCTGGTGGAGAACT
Leptographium_wagener                   GGCAACCAAATCGGTGCCGCTTTCTGGCAGCAGATCTCCAGCGAGCACGGTCTCGACAGCAATGGCGTGTACAACGGCACGTCTGATCTTCAGCTCGAGCGCATGAGCGTGTACTTCAACGAGGCCTCGGGCAACAAATATGTGCCCCGCGCCGTCCTTGTGGATCTGGAGCCCGGTACCATGGATGCGGTGCGCGCCGGTCCCTTTGGCCAGCTCTTCCGTCCTGACAACTTCGTCTTCGGCCAGTCGGGTGCCGGCAACAACTGGGCCAAGGGTCACTACACGGAGGGTGCCGAGCTTGTCGACCAGGTGCTCGACGTTGTCCGTCGCGAGGCGGAGGGCTGTGACAGCCTGCAGGGCTTCCAGATCACGCACTCCCTGGGTGGTGGCACGGGTGCCGGTATGGGCACCCTGCTGATCTCCAAGATCCGCGAGGAGTTCCCTGACCGGATGATGGCCACGTTCTCGGTTGTGCCGTCGCCCAAGGTGTCGGACACAGTTGTTGAGCCGTACAACGCGACTCTGTCGGTGCACCAGCTGGTGGAGAACT
Ophiostoma_abiocarpum_2FJ3TOA           GGCAACCAAATTGGTGCCGCTTTCTGGCAGCAGATTTCCGGCGAGCACGGCCTCGACAGCAGTGGCGTGTACAATGGCACCTCTGACCTCCAGCTGGAGCGCATGAGCGTGTACTTCAACGAGGCTTCGGGCAACAAGTACGTCCCCCGCGCGGTGCTCGTCGATCTCGAGCCCGGCACCATGGATGCCGTCCGTGCCGGCCCGTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTCTTTGGCCAATCGGGTGCCGGCAACAACTGGGCCAAGGGCCACTACACCGAGGGTGCTGAGCTTGTGGACCAGGTCCTGGACGTGGTCCGCCGCGAGGCTGAGGGCTGCGACAGCCTGCAGGGCTTTCAGATCACCCACTCGCTGGGTGGTGGTACGGGTGCCGGTATGGGTACTCTCCTGATCTCGAAGATCCGCGAGGAGTTCCCCGATCGGATGATGGCCACCTTCTCGGTGATGCCGTCGCCCAAGGTGTCGGACACAGTTGTCGAGCCGTACAACGCGACGCTGTCGGTGCACCAGCTGGTGGAGAACT
Ophiostoma_abiocarpum_MUCL18351         GGCAACCAAATTGGTGCCGCTTTCTGGCAGCAGATTTCCGGCGAGCACGGCCTTGACAGCAGTGGCGTGTACAATGGCACCTCTGACCTCCAGCTGGAGCGCATGAGCGTGTACTTCAACGAGGCTTCGGGCAACAAGTACGTCCCCCGCGCGGTGCTCGTCGATCTCGAGCCCGGCACCATGGATGCCGTCCGTGCCGGCCCGTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTCTTTGGCCAATCGGGTGCCGGCAACAACTGGGCCAAGGGCCACTACACCGAGGGTGCTGAGCTTGTGGACCAGGTCCTGGACGTGGTCCGCCGCGAGGCTGAGGGCTGCGACAGCCTGCAGGGCTTTCAGATCACCCACTCGCTGGGTGGTGGTACGGGTGCCGGTATGGGTACTCTCCTGATCTCGAAGATCCGCGAGGAGTTCCCCGACCGGATGATGGCCACCTTCTCGGTGATGCCGTCGCCCAAGGTGTCGGACACAGTTGTCGAGCCGTACAACGCGACGCTGTCGGTGCACCAGCTGGTGGAGAACT
Ophiostoma_aenigmaticum                 GGTAACCAGATCGGTGCTGCTTTCTGGCAGCAGATCTCCAGCGAGCACGGTCTCGACAGCAATGGCGTGTACAACGGCACGTCTGAGCTCCAACTCGAGCGCATGAGCGTGTACTTCAACGAGGCTTCGGGCAACAAGTATGTGCCCCGCGCCGTCCTGGTCGATCTCGAGCCCGGCACGATGGATGCCGTGCGCGCCGGCCCCTTTGGTCAGCTCTTCCGCCCCGACAACTTCGTTTTCGGCCAGTCGGGTGCCGGCAACAACTGGGCCAAGGGTCACT??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Ophiostoma_huntii                       GGTAACCAGATTGGTGCCGCTTTCTGGCAGCAGATCTCCAGCGAGCACGGTCTCGACAGCAATGGCGTGTACAACGGCACGTCTGAGCTCCAGCTCGAGCGCATGAGCGTGTACTTCAACGAGGCTTCGGGCAACAAGTACGTGCCTCGCGCCGTCCTAGTCGATCTCGAGCCCGGTACGATGGATGCCGTGCGCGCCGGCCCCTTTGGCCAGCTCTTCCGCCCTGACAACTTCGTTTTCGGCCAGTCGGGTGCCGGCAACAACTGGGCCAAGGGTCACTACACAGAGGGTGCCGAGCTTGTGGACCAGGTGCTCGACGTCGTCCGCCGCGAGGCTGAGGGCTGTGACAGCCTCCAGGGCTTCCAGATCACGCACTCCCTCGGCGGTGGCACGGGTGCCGGTATGGGCACCCTGCTGATCTCCAAGATTCGCGAGGAGTTCCCCGACCGGATGATGGCCACGTTCTCGGTGGTGCCGTCGCCCAAGGTGTCGGACACAGTTGTAGAGCCGTACAACGCGACTCTTTCGGTGCACCAGCTGGTGGAGAACT
Ophiostoma_penicillatum_CBS140.36       GGCAACCAAATTGGTGCCGCCTTCTGGCAGCAGATCTCCGGCGAGCACGGCCTTGACAGCAGTGGCGTGTACAATGGCACCTCGGATCTCCAGCTGGAGCGGATGAGCGTCTACTTCAACGAGGCTTCGGGCAACAAGTATGTCCCCCGCGCCGTCCTCGTCGATCTGGAGCCCGGTACGATGGATGCGGTGCGTGCGGGCCCGTTCGGCCAGCTCTTTCGTCCCGACAACTTCGTCTTTGGCCAGTCCGGTGCGGGCAACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTTGTCGACCAGGTGCTCGACGTCGTCCGCCGCGAGGCCGAGGGCTGCGACAGCCTGCAGGGTTTCCAGATTACGCACTCCCTGGGCGGCGGTACGGGTGCTGGTATGGGCACGCTCCTCATCTCGAAGATCCGCGAGGAGTTTCCCGATCGGATGATGGCTACCTTCTCGGTGATGCCGTCGCCAAAGGTGTCGGACACAGTTGTGGAGCCGTACAACGCGACGTTGTCGGTGCACCAGCTGGTGGAGAACT
Ophiostoma_penicillatum_UAMH9582        GGCAACCAAATTGGTGCCGCCTTCTGGCAGCAGATCTCCGGCGAGCACGGCCTTGACAGCAGTGGCGTGTACAATGGCACCTCGGATCTCCAGCTGGAGCGGATGAGCGTCTACTTCAACGAGGCTTCGGGCAACAAGTATGTCCCCCGCGCCGTCCTCGTCGATCTGGAGCCCGGTACGATGGATGCGGTGCGTGCGGGCCCGTTCGGCCAGCTCTTTCGTCCCGACAACTTCGTCTTTGGCCAGTCCGGTGCGGGCAACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTTGTCGACCAGGTGCTCGACGTCGTCCGCCGCGAGGCCGAGGGCTGCGACAGCCTGCAGGGTTTCCAGATTACGCACTCCCTGGGCGGCGGTACGGGTGCTGGTATGGGCACGCTCCTCATCTCGAAGATCCGCGAGGAGTTTCCCGATCGGATGATGGCTACCTTCTCGGTGATGCCGTCGCCAAAGGTGTCGGACACAGTTGTGGAGCCGTACAACGCGACGTTGTCGGTGCACCAGCTGGTGGAGAACT
Ophiostoma_piceaperdum                  GGTAACCAGATTGGTGCTGCTTTCTGGCAGCAGATCTCCAGCGAGCACGGTCTCGACAGCAATGGCGTGTACAACGGCACGTCTGAGCTCCAACTCGAGCGCATGAGCGTGTACTTCAACGAGGCTTCGGGCAACAAGTATGTGCCCCGCGCCGTCCTGGTCGATCTCGAGCCCGGCACGATGGATGCCGTGCGCGCCGGCCCCTTTGGCCAGCTCTTCCGCCCCGACAACTTCGTTTTCGGCCAGTCGGGTGCCGGCAACAACTGGGCCAAGGGTCACTACACGGAGGGTGCCGAGCTTGTGGACCAGGTGCTTGACGTCGTCCGCCGCGAGGCCGAGGGCTGTGACAGCCTCCAGGGCTTCCAGATCACGCACTCCCTGGGTGGTGGTACGGGTGCCGGTATGGGCACCCTGCTGATCTCCAAGATCCGCGAGGAGTTCCCCGACCGGATGATGGCCACGTTCTCGGTGGTGCCGTCGCCCAAGGTGTCGGACACAGTTGTGGAGCCGTACAACGCGACGCTGTCGGTGCACCAGCTGGTGGAGAACT
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = Exon_betatubulin) = 
		N: 1-550;
CODONPOSSET  CodonPositions (CHARACTERS = Exon_betatubulin) = 
		N: 1-550;
END;
[ The following blocks are output data for analysis step 5483 ]
BEGIN TREES;
      TITLE Tb10891;
      LINK TAXA = TaxaForAnalysisStep5483;
      TREE Fig._14 = [&R] (((((Ophiostoma_piceaperdum,Ophiostoma_aenigmaticum),(Leptographium_lundbergii,Ophiostoma_huntii)),Leptographium_wagener),((((Leptographium_fruticetum_DAOM234389,Leptographium_fruticetum_DAOM234391),(Ophiostoma_abiocarpum_2FJ3TOA,Ophiostoma_abiocarpum_MUCL18351)),(Leptographium_abietinum_AY263182,Leptographium_abietinum_3YT5PLa)),(Ophiostoma_penicillatum_UAMH9582,Ophiostoma_penicillatum_CBS140.36))),Leptographium_elegans);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr6004]


END;