#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on November 10, 2026; 7:41 GMT

TreeBASE (cc) 1994-2008

Study reference:
Bremer K. 1988. The limits of amino acid sequence data in angiosperm phylogenetic
reconstruction. Evolution, 42: 795-803.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S115]

[ The following blocks are input data for analysis step 56 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep56;
        DIMENSIONS NTAX=6;
        TAXLABELS
            Apiaceae
            Brassicaceae
            Caprifoliaceae
            Chenopodiaceae
            Fabaceae
            Poaceae
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2039]

	TITLE Figure_2;
	LINK TAXA = TaxaForAnalysisStep56;
	DIMENSIONS NCHAR=82;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                          10        20        30        40        50        60        70        80        90        100]
[                           .         .         .         .         .         .         .         .         .         .]
Apiaceae           AATGCCAACAACAGCGGTGGGCGAAGTCGGACAGCAAGTTGACTCGTCTGA{CT}GAGTTAGACA{AG}AAGAGA{AG}{AG}{CT}CA{CT}CACGTGT
Brassicaceae       CAAGGAAGATTGAGGGATAAATGGAAGAGAGTGGATCAACAAGAAAAGAGA{AG}GACAGGGAGC?CAGTTG{CT}{CT}?AT{CT}GCCACGT
Caprifoliaceae     ATTGCCTGCCTCAGCGTTGGATGAGGAACTACGGCCCAACATAAAAAATTA{CT}CCCATGCCCA{CT}TGCAGG{AG}{CT}{AG}AGGGTAACAC
Chenopodiaceae     CGTACCTACAAGTCTTAAGGGTGGGGCCGTGTGTCAAGTTCAATCGTGTTG?AAGTTCCCGC?AACAGC{CT}{CT}{CT}AGGGCTACAC
Fabaceae           CAAGGAAGAATCAGTGAGGGGTCAAATATCACAGATCAACATATAAAGAT???C?ATGCCCA??G?GA??{CT}{AG}AGGG????AC
Poaceae            CGTTCCTACAAGCCTTAGAACACAAAGAAGACGTCCCAACAAGAAATGAGG{AG}GAGTCGCCCA{AG}AAGGAA{CT}{AG}{AG}CGGCAAGTAC
;
END;

[ The following blocks are output data for analysis step 56 ]
BEGIN TREES;
      TITLE Tb4835;
      LINK TAXA = TaxaForAnalysisStep56;
      TREE Fig._8A = [&R] (((Apiaceae,Chenopodiaceae),(Brassicaceae,Fabaceae),Caprifoliaceae),Poaceae);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr627]


END;
BEGIN TREES;
      TITLE Tb4835;
      LINK TAXA = TaxaForAnalysisStep56;
      TREE Fig._8B = [&R] ((Apiaceae,Brassicaceae,Caprifoliaceae,Chenopodiaceae,Fabaceae),Poaceae);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr628]


END;
BEGIN TREES;
      TITLE Tb4835;
      LINK TAXA = TaxaForAnalysisStep56;
      TREE Fig._7 = [&R] (Poaceae,(((Apiaceae,Chenopodiaceae),Caprifoliaceae),(Brassicaceae,Fabaceae)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr626]


END;
BEGIN TREES;
      TITLE Tb4835;
      LINK TAXA = TaxaForAnalysisStep56;
      TREE Fig._6 = [&R] (Poaceae,((Apiaceae,Chenopodiaceae),((Brassicaceae,Fabaceae),Caprifoliaceae)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr625]


END;