#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on January 19, 2026; 13:06 GMT TreeBASE (cc) 1994-2008 Study reference: Mostowfizadeh-ghalmfarsa R., Cooke D., Panabiéres F., & Banihashemi Z. 2010. Phylogenetic Relationship of Phytophthora cryptogea Pethybr. & Laff and P. drechsleri Tucker. Fungal Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10270] [ The following blocks are input data for analysis step 5651 ] BEGIN TAXA; TITLE TaxaForAnalysisStep5651; DIMENSIONS NTAX=47; TAXLABELS Phytophthora_cryptogea_SCRP201 Phytophthora_cryptogea_SCRP204 Phytophthora_cryptogea_SCRP205 Phytophthora_cryptogea_SCRP206 Phytophthora_cryptogea_SCRP207 Phytophthora_cryptogea_SCRP209 Phytophthora_cryptogea_SCRP210 Phytophthora_cryptogea_SCRP212 Phytophthora_cryptogea_SCRP213 Phytophthora_cryptogea_SCRP214 Phytophthora_cryptogea_SCRP217 Phytophthora_cryptogea_SCRP219 Phytophthora_cryptogea_SCRP220 Phytophthora_cryptogea_SCRP221 Phytophthora_cryptogea_SCRP223 Phytophthora_cryptogea_SCRP225 Phytophthora_cryptogea_SCRP226 Phytophthora_cryptogea_SCRP228 Phytophthora_cryptogea_SCRP229 Phytophthora_cryptogea_SCRP230 Phytophthora_cryptogea_SCRP235 Phytophthora_cryptogea_SCRP731 Phytophthora_cryptogea_SCRP732 Phytophthora_cryptogea_SUC2 Phytophthora_cryptogea_SUC4 Phytophthora_cryptogea_SUKv15 Phytophthora_cryptogea_SUSt1 Phytophthora_cryptogea_SUSt3 Phytophthora_drechsleri_SCRP222 Phytophthora_drechsleri_SCRP232 Phytophthora_drechsleri_SCRP236 Phytophthora_drechsleri_SCRP239 Phytophthora_drechsleri_SUAh4 Phytophthora_drechsleri_SUAk2 Phytophthora_drechsleri_SUC18 Phytophthora_drechsleri_SUC20 Phytophthora_drechsleri_SUC5 Phytophthora_drechsleri_SUKv3 Phytophthora_drechsleri_SUSa1 Phytophthora_drechsleri_SUSa2 Phytophthora_drechsleri_SUSd3 Phytophthora_drechsleri_SUSr1 Phytophthora_erythroseptica_SCRP238 Phytophthora_erythroseptica_SCRP240 Phytophthora_erythroseptica_SCRP241 Phytophthora_erythroseptica_SCRP242 Phytophthora_lateralis_SCRP390 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M4825] TITLE Elicitin; LINK TAXA = TaxaForAnalysisStep5651; DIMENSIONS NCHAR=329; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Phytophthora_cryptogea_SCRP201 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCG{CT}CGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGT{AT}CGT{AC}GCTCTCGTGAGCATCCTGTCGGA{CT}{GT}CGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGA{CT}TGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP204 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCTCTCGTGAGCATCCTGTCGGA{CT}TCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP205 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCG{CT}CGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTTCGT{AC}GCTCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGA{CT}TGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP206 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCG{CT}CGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTTCGT{AC}GCTCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGATTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP207 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCG{CT}CGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTTCGT{AC}GCTCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGA{CT}TGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP209 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCTCTCGTGAGCATCCTGTCGGACTCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTGACGGCCAC{AG}TCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACG{CT}T{CG}AACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP210 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCTCTCGTGAGCATCCTGTCGGA{CT}TCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP212 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTTCGT{AC}GCTCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGA{CT}TGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP213 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGT{AT}CGTCGCTCTCGTGAGCATCCTGTCGGA{CT}{GT}CGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGA{CT}TGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP214 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGT{AT}CGTCGCTCTCGTGAGCATCCTGTCGGAC{GT}CGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGA{CT}TGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP217 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCG{CT}CGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCTCTCGTGAGCATCCTGTCGGACTCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCT{CG}ACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP219 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGTCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTTCGTAGCTCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGATTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP220 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCTCTCGTGAGCATCCTGTCGGACTCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCT{CG}ACGGCCAC{AG}TCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACG{CT}TGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP221 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCTCTCGTGAGCATCCTGTCGGA{CT}TCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP223 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCTCTCGTGAGCATCCTGTCGGA{CT}TCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP225 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTTCGT{AC}GCTCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGA{CT}TGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP226 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTTCGTCGCTCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGATTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP228 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTTCGT{AC}GCTCTCGTGAGCATCCTGTCGGAC{GT}CGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGA{CT}TGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP229 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCG{CT}CGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTTCGT{AC}GCTCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGA{CT}TGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP230 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCG{CT}CGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTTCGT{AC}GCTCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGA{CT}TGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP235 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCTCTCGTGAGCATCCTGTCGGA{CT}TCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP731 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCTCTCGTGAGCATCCTGTCGGACTCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCAC{AG}TCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACG{CT}TGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SCRP732 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCTCTCGTGAGCATCCTGTCGGACTCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCAC{AG}TCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACG{CT}TGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SUC2 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCTCTCGTGAGCATCCTGTCGGA{CT}TCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SUC4 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTTCGTCGCTCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGA{CT}TGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SUKv15 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCTCTCGTGAGCATCCTGTCGGA{CT}TCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SUSt1 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCTCTCGTGAGCATCCTGTCGGA{CT}{GT}CGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCT{CG}ACGGCCAC{CG}TCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_cryptogea_SUSt3 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCTCTCGTGAGCATCCTGTCGGA{CT}{GT}CGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCT{CG}ACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_drechsleri_SCRP222 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGT{CT}GCCGCCCTTGTGGGCTCCACCTCCGCCACCAC{AG}TGCACCACGACCCAGCAGACGGCTGCGTACGTCGCGCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCCATGCTGACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_drechsleri_SCRP232 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTC{AC}ACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCGCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCCATGCTGACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_drechsleri_SCRP236 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCT{CT}GTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCGCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCCATGCTGACGGCCACGTCGCTCCC{CT}ACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_drechsleri_SCRP239 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGT{CT}GCCGCCCTTGTGGGCTCCACCTCCGCCACCAC{AG}TGCACCACGACCCAGCAGACGGCTGCGTACGTCGCGCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCCATGCTGACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_drechsleri_SUAh4 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCGCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCCATGCTGACGGCCACGTCGCTCCC{CT}ACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_drechsleri_SUAk2 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCGCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCCATGCTGACGGCCACGTCGCTCCC{CT}ACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_drechsleri_SUC18 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCGCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCCATGCTGACGGCCACGTCGCTCCC{CT}ACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_drechsleri_SUC20 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCGCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCCATGCTGACGGCCACGTCGCTCCC{CT}ACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_drechsleri_SUC5 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCGCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCCATGCTGACGGCCACGTCGCTCCC{CT}ACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_drechsleri_SUKv3 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCGCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCCATGCTGACGGCCACGTCGCTCCC{CT}ACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_drechsleri_SUSa1 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCGCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCCATGCTGACGGCCACGTCGCTCCC{CT}ACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_drechsleri_SUSa2 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCT{CT}GTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCGCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCCATGCTGACGGCCACGTCGCTCCC{CT}ACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_drechsleri_SUSd3 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCT{CT}GTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCGCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCCATGCTGACGGCCACGTCGCTCCC{CT}ACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_drechsleri_SUSr1 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTACGTCGCGCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCCATGCTGACGGCCACGTCGCTCCC{CT}ACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_erythroseptica_SCRP238 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTTCGTCGCTCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_erythroseptica_SCRP240 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTTCGTCGCTCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_erythroseptica_SCRP241 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTTCGTCGCTCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_erythroseptica_SCRP242 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCCACCTCCGCCACCACGTGCACCACGACCCAGCAGACGGCTGCGTTCGTCGCTCTCGTGAGCATCCTGTCGGACGCGTCGTTCAACCAGTGCGCCACGGACTCTGGCTACTCGATGCTCACGGCCACGTCGCTCCCCACGACGGACCAGTACAAGCTCATGTGCGCGTCCACGGCGTGCAACTCCATGATCGCCAAGATCATTACGCTGAACGCGCCCGACTGCGAGCTGACGGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA Phytophthora_lateralis_SCRP390 TTGATGAACTT{CT}CG{CT}GCTCTGTTCGCCGCCACCGTCGCCGCCCTCGTGGGCTCGACCTCCGCCACCACGTGTACCACGACCCAGCAGACGGCCGCGTACGTGGCGCTCGTGAGCATCCTGTCGGACTCGTCCTTCTCGACGTGCGCCAGCGACTCTAGCTACTCGATGCTGACGGCCACGGCACTGCCCACGACGGCGCAGTACACGCTCATGTGCAAGTCCACAGCGTGCAACACGATGATCACCAAGATCGTGTCGCTGAACCCGCCCGACTGCGAGCTGACTGTGCCCACGAGCGGCCTGGTGCTCAACGT{CG}TACTCGTACGCAAA ; END; BEGIN CODONS; CODONPOSSET CodonPositions (CHARACTERS = Elicitin) = N: 1-329; CODONPOSSET * CodonPositions (CHARACTERS = Elicitin) = N: 1-329; END; [ The following blocks are output data for analysis step 5651 ] BEGIN TREES; TITLE Tb11310; LINK TAXA = TaxaForAnalysisStep5651; TREE Fig._7a = [&R] ((((((((((((((Phytophthora_cryptogea_SUC2,(Phytophthora_cryptogea_SCRP210,(Phytophthora_cryptogea_SCRP731,Phytophthora_cryptogea_SCRP732))),Phytophthora_cryptogea_SCRP235),Phytophthora_cryptogea_SCRP221),Phytophthora_cryptogea_SUKv15),Phytophthora_cryptogea_SCRP223),Phytophthora_cryptogea_SCRP204),(Phytophthora_cryptogea_SCRP201,(Phytophthora_cryptogea_SCRP214,(Phytophthora_cryptogea_SCRP213,(Phytophthora_cryptogea_SCRP228,((Phytophthora_cryptogea_SCRP225,(Phytophthora_cryptogea_SUC4,(Phytophthora_cryptogea_SCRP212,(Phytophthora_cryptogea_SCRP230,(Phytophthora_cryptogea_SCRP229,(Phytophthora_cryptogea_SCRP207,(Phytophthora_cryptogea_SCRP226,(Phytophthora_cryptogea_SCRP205,(Phytophthora_cryptogea_SCRP206,Phytophthora_cryptogea_SCRP219))))))))),(Phytophthora_erythroseptica_SCRP242,(Phytophthora_erythroseptica_SCRP241,(Phytophthora_erythroseptica_SCRP238,Phytophthora_erythroseptica_SCRP240))))))))),Phytophthora_cryptogea_SCRP220),Phytophthora_cryptogea_SCRP217),Phytophthora_cryptogea_SUSt1),Phytophthora_cryptogea_SUSt3),Phytophthora_cryptogea_SCRP209),(Phytophthora_drechsleri_SCRP232,(Phytophthora_drechsleri_SUSr1,(Phytophthora_drechsleri_SUSa1,(Phytophthora_drechsleri_SUKv3,(Phytophthora_drechsleri_SUC20,(Phytophthora_drechsleri_SUC18,(Phytophthora_drechsleri_SUC5,(Phytophthora_drechsleri_SUAk2,(Phytophthora_drechsleri_SUAh4,(Phytophthora_drechsleri_SUSd3,(Phytophthora_drechsleri_SUSa2,(Phytophthora_drechsleri_SCRP236,(Phytophthora_drechsleri_SCRP222,Phytophthora_drechsleri_SCRP239)))))))))))))),Phytophthora_lateralis_SCRP390); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr6889] END;