#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 12, 2025; 11:07 GMT

TreeBASE (cc) 1994-2008

Study reference:
Ley A., & Claßen-bockhoff R. 2010. Evolution in African Marantaceae - Evidence from
Phylogenetic, Ecological and Morphological Studies. Systematic Botany, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S10287]

[ The following blocks are input data for analysis step 5688 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep5688;
        DIMENSIONS NTAX=9;
        TAXLABELS
            Hypselodelphys_hirsuta
            Hypselodelphys_poggeana
            Hypselodelphys_scandens
            Hypselodelphys_sp._1_nov.
            Hypselodelphys_triangularis
            Hypselodelphys_velutina
            Hypselodelphys_violacea
            Sarcophrynium_schweinfurthianum
            Trachyphrynium_brauneanum
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M4903]

	TITLE 5S_DNA_Hypselodelphys;
	LINK TAXA = TaxaForAnalysisStep5688;
	DIMENSIONS NCHAR=420;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                           10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420]
[                                            .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]
Hypselodelphys_hirsuta              CGAGG-TTGCGGTGCGAACAATAACTGAACT-ACACTTCAGGGTGAAATTTTGAGGTATTATCGGG-ATGCGC-AACAAGGAAAAAGTCGTCATTG?TTTTTTA--TCCG-TTATCACGTTGCCCTTCGCAACGGCGTATAAATCGTTGAAAACGGACAATCGTGCAAAAAGTTACGCTCGTTGCGGTAAAATTGCGCGTCACTCGGCCC-ACGATCCCATTT-CGAC-ATCGTCGTTGTCTCGGGATTCGTGCCAAC-AATATTTCACCATCTCGAG----TGGGGGCAGCGGTGATTCAAGAGGACACTGCGGTCGTGTGGGAGCCACGTGCAACGTGTCACGGAGGAAGCACGCTATGCGAGCGCGGAACACATGTGTAACGAAAGCGATCAAAATTTGATGGGTGCGATCATACC?
Hypselodelphys_poggeana             CGAGG-TTGCGGTGCGAC-AATAACTCA-CT-ACACTTCAGG-TGAAATTTTGAGT-ATTATCGGG-ATGCGC-AACAAG-AAAAAGTCGTCATC-GTTTTTTA--TCCG-TTATCAC-TTGCCCTTCGCAACGGCGTATAAATCATTAAAAACTGACAATCGTGCAAAAAGTTACGCTCGCTGCGGTAAAATTGCGCATCACTCGCCCCGAATTTCCCATTT-CGTC-?TCG?CGTTGTCTCGGGATTCG?CCCC?C-AACATTTC?GC?TCTCGAG----GGGGGGCAG?GG?GATTCA?GAGGAC?CTGCGG?C?TG?GGGAGCC?CGTGCGACG?GTC?TG?AGGAAGCACG?T?TGCGAGCGCGGAACAC?T?TGTAACGAAAGCGATAAAT?TTTGA?GGGGGCGATC?TACCA
Hypselodelphys_scandens             CGAGGGTTTCGCTGCGAC-AATAACTCA-CT-ACACTTCAGGATGAAATTTTGAGC-ATCATCGGG-ATGCG-TAACAAA-AAAAAGTCGTCATT-ATTTTTTA--TCCA-TCGTCAC-TTCCCCTTCGCAACGGCGTATAAATCATTAAAAACGGACGATCGTGCGAAAAGTTACGGTCATTGCGGTAAAATTGCGCATCATTCGTCCC-ACGTTCCCAT-TCCGTC-ATCGTCGTTGTCTCGGGATTCGTGCCAAC-AATATTTCACCATCTAGCG----TGGGAGCAGTGGTGATTCATGAGGACACTGCGGTCATGTGGGAGCCACGTCCAACGTGTCATGGACGGAGCATGCAATGCGAGCGCGCAACACATACATAAGAGAAGCGATAGAGATTTGACGGGTGCGATCATACCC
Hypselodelphys_sp._1_nov.           CGAGG-TTGCGCTGCGAC-AATAACTCA-CT-ACACTTCAGG-TGAAATTTTGAGC-ATCATCGGG-ATGC?-TAACAAG-AAAAAGTCGTCATT-ATTTTTTA--TCCG-TTATCAC-TTCCCCTTCGCAACGGCGTATAAATCATTAAAAACCGACAATCGTGCGAAAAGTTACGCTCATTTCGGTAAAATTACGCATCATTCGGCCC-ACGTTCCCTTTT-CGTC-ATCGTCGTTGTCTCGGGATTCGTGCCAAC-AATATTTCACCATCTAGCG----TGGTAGCAGTGGTGATTCATGAGGGCACTGCGGTCATGTGGGAGCCACGTCCAACGTGTCATGGACGGAGCATGCTATGCGAGCGCGCAGCACATACATAACAGAAGCGATAAAGATTTGATGGGTGCGATCATACCA
Hypselodelphys_triangularis         CGAGG--TGCGCTGCGAC-AATAACTCA-CT-ACACTTCAGGGTGAAATTTTGAGC-ATCATCGGG-ATGCG-TAACAAG-AAAAAGTCGTCATT-ATTTTTTA--TCCG-TTATCAC-TTCCCCTTCGCAACGGCGTATAAATCATTAAAAACCGACAATCGTGCGAAAAGTTACGCTCATTGCGGTAAAATTGCGCATCATTCGGCCC-ACGTTCC-ATTTTCGTC-ATCGTCGTTGTCTCGGGATTCGTGCCAAC-AATATTTCACCATCTAGCG----TGGGAGCAGTGGTGATTCGTGAGGACACTGCGGTCATGTGGGAGCCACGTCCAACGTGTCATGGGGGGAGCATGCCATGCGAGCGCGCAACACATACATAACAGAAGCGATAAAGATTTGATGGGTGCGATCATACCA
Hypselodelphys_velutina             C--GGGTTGCGGTGCGAC-AATAACACACCT-ACACTTCAGGTG?AA-TTTTGAG?-ATTATCGGG-ATGCGC-AAC?AG-AAAAAGTCGTCATC-GTTTTTTA--TCCG-TCATC?C-TTGCCCTTCGCAACGGCGTATAAATCATTAAAAACCGACAATCGGGCAAAAAGTTACGCTCGTTGCGGTAAAATTGCGCATCACTCGGCCC-ACGTTCCCATTT-CGTC-ATCGTCGTTGTCTCGGGATTCGTGCCAAC-G?TATTTCACCATC?AGAG----TGGGGGCAGCGGTGATTCAAGAGGACACTGCGGTCGTGTGGGAGCCACGTCCAACGTGTCATGGAGGAAGCACGCTATGCGAGCGCGGAACACATATGTAACGAAAGCGATAA?AATTTGATGGGTGCGATCATACCA
Hypselodelphys_violacea             CGAGG--TGCGCTGCGAC-AATAACTCA-CT-ACACTTCAGGGTGAAATTTTGAGC-ATCATCGGG-ATGCGCTAACAAG-AAAAAGTCGTCATT-ATTTTTTA--TCCG-?TATCACG?TCCCCTTCGCAACGGCGTATAAATCATTAAAAACCGACAATCGTGCGAAAAGTTACGCTCATTGCGGTAAAATTACGCATCATTCGGCCC-ACGTTCCCTTTT-CGTC-ATCGTCGTTGTCTCGGGATTCGTGCCAAC-AATATTTCACCATCTAGCG----TGGGAGCAGTGGTGATTCATGAGG?CACTGCGGT?ATGTGGGAGCCACGTCCAACGTGTCATGGACGGAGCATGCTATGCGAGCGCGCAACACATACATAACAGAAGCGATAAAGATTTGATGGGTGCGATCATACCA
Sarcophrynium_schweinfurthianum     CCAGGGTT--GGTGGCCGGGAAGA-TAGACTGACACTTCTGGGGCGA-TTTTGGGGCA-CATCGGG-ATGCGCTGCTGAG-AAAAATTGTTCCGT-GTTTT--ATGTCCGGCGTTCTC-GTCGCCATCGTAACGGCACCTAAATCGCCCAAAACGGAAAATTGTGCGCAAAGTTACCCCCG?TGCAGCGAATAGTAGCGTCGTTCGGCGCCCGCTTC-AATCTCGGTAGATCCTCGCGGGGCCGCGACTCGTGG-AACCAAGGTTTCAACGTTGCGGCGCACAGGG---AGAGGCCACAGAACGGGACACCGAGGGCCTGTGGGGACCAC-TAGCGCATGTCCTCGACCGTGCGTCGCA--GGATCGTGCGTCATTTATATGATGGAGGCGATGCA?GTGTGACGGGTGCGATCATACCA
Trachyphrynium_brauneanum           CGAGG--TGCGATGCGACGAATAACTCG-CT-ACACTTCAGGTGAAAATTTTGAGATATCATCGGGGATGCGC-AACAAG-AAAAAGTCGTCATC-GTTTTTTA--TCCG-CTATCAC-TTGCCCTTCGTAACGGCGTATAAATCACTAAAAACAGGCAATCGTGCAAAAAGTTATGCCCGCTGCGGTAAAACTGCG?A?CATTCGGCCC-TCCTTCCCTTTT-CGTC-ATCGTCGTTGCCTCG?GGTTCTCGCCAAC-AATATTTCCCCATCTAGAG----TGGGAGCAG?GGTGATTCATGAGGACACTGGGGTCGTGTGGGACCCACGTCGAACCTGTCATGGACGGAGCACGCTTTGAGAGCGCGCAACACATAGATAACGGAAGTGATAAAGATATGACGGGTGCGATCATACCA
;
END;

BEGIN CODONS;
CODONPOSSET  CodonPositions (CHARACTERS = 5S_DNA_Hypselodelphys) = 
		N: 1-420;
CODONPOSSET * CodonPositions (CHARACTERS = 5S_DNA_Hypselodelphys) = 
		N: 1-420;
END;
[ The following blocks are output data for analysis step 5688 ]
BEGIN TREES;
      TITLE Tb11347;
      LINK TAXA = TaxaForAnalysisStep5688;
      TREE Fig._2 = [&R] (((((Hypselodelphys_hirsuta,Hypselodelphys_poggeana),Hypselodelphys_velutina),((Hypselodelphys_violacea,Hypselodelphys_sp._1_nov.),Hypselodelphys_triangularis,Hypselodelphys_scandens)),Trachyphrynium_brauneanum),Sarcophrynium_schweinfurthianum);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr6760]


END;