#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 12, 2024; 15:44 GMT

TreeBASE (cc) 1994-2008

Study reference:
Menkis A., Whittle C.A., & Johannesson H. 2010. Gene genealogies indicates abundant
gene conversions and independent evolutionary histories of the mating-type chromosomes
in the evolutionary history of Neurospora tetrasperma. BMC Evolutionary
Biology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S10701]

[ The following blocks are input data for analysis step 6228 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep6228;
        DIMENSIONS NTAX=21;
        TAXLABELS
            Neurospora_crassa_tef_1
            Neurospora_tetrasperma_1941_a
            Neurospora_tetrasperma_1941A
            Neurospora_tetrasperma_3998A
            Neurospora_tetrasperma_4245a
            Neurospora_tetrasperma_965_a
            Neurospora_tetrasperma_965A
            Neurospora_tetrasperma_J2_a
            Neurospora_tetrasperma_J2A
            Neurospora_tetrasperma_P2361_a
            Neurospora_tetrasperma_P2361A
            Neurospora_tetrasperma_P4460_a
            Neurospora_tetrasperma_P4460A
            Neurospora_tetrasperma_P4492_a
            Neurospora_tetrasperma_P4492A
            Neurospora_tetrasperma_P535_a
            Neurospora_tetrasperma_P535A
            Neurospora_tetrasperma_P581_a
            Neurospora_tetrasperma_P581A
            Neurospora_tetrasperma_RLM131_a
            Neurospora_tetrasperma_RLM131A
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M6110]

	TITLE 'tef-1';
	LINK TAXA = TaxaForAnalysisStep6228;
	DIMENSIONS NCHAR=777;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -;

MATRIX
[                                           10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       ]
[                                            .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .       ]
Neurospora_crassa_tef_1             CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACTATCTGCTTAGCTCACCATTCACATCGCCATTCCCCTCTGCTCTGCCATTCTGCTGTCTTTGAGCCTTTCCCC-GCCGGTTTGGCTTTGTGGCAACCCCTCACCCTCTCATGGTGGGGTTGGGGCTCAAAGATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTCAAACACCACGACGCAACCCCAACTCATATACACTCCACATGATGCTGACTATCAACCACAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACCATAGCCCCGCATTCATTCCAACTCATGCTAATTCATTACCTCGACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATCCTCATCATTGCCGCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATTGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_1941_a       CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATCCCCATCGCCATCTCCTTCTGCTCTGCCATTATGCTGTCTTTGGGCCTTTCCCC-GCTGGTTTGGCTTTGTGGCAACCCCTCACCTTCTCATGGTGGGGCTGGGGCTCAAAGATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTGAAACATCACCAAGCAACCCCAACTCATCTACACTCGACATGATGCTGACTATGAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTAGGTCGCACTA--GCCTCGCATTCATTCCAACTCATGCTAAT-CAATACCTCAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCTGGCACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATCGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_1941A        CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACAATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATTCACATCGCCATTCCCTTCTGCTCTGCCACCCTGCTGTCTTTGGGCCTTTCCCC-GCTGGTTTGGCTTTGTGGCAACCCCTCACCTTCTCATGGTGGGGTTGGGGCTCAAAGATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTCAAACAACACCAAGCAACTCCAACTCATGTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACTGTAGCCTTGCATCCATTCCAACTCATGCTAATTCATTACCTCAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGTCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATCGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_3998A        CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCATCATCTGCTCAGCTCACCATCCTCATTGCCATTTCCCTCTGCTCTGCCATTCTGCTGTCTTTGGGCCTTTCCCC-GCTGGTTTGGCTTTGTGGCAACCCCTCACC---TTATGGTGGGGTTGGGGCTCAAAGATTTTCGCTTGGCTGCGCACAGACCCATTTACCCCGCGTTCGAACAACACCAAGCAACTCCAACTCATTTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACTATAGCCCCGCATTCATTCCAACTCATGCTAATTCATTACCTTAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATTGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACCCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_4245a        CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATCCCCATCGCCATCTCCTTCTGCTCTGCCATTATGCTGTCTTTGGGCCTTTCCCC-GCTGGTTTGGCTTTGTGGCAACCCCTCACCTTCTCATGGTGGGGCTGGGGCTCAAAGATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTGAAACATCACCAAGCAACCCCAACTCATCTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAATTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTAGGTCGCACTA--GCCTCGCATTCATTCCAACTCATGCTAAT-CAATACCTCAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTATACCCTCGGTGTCAAGCAGCTCATCGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_965_a        CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTTAGCTCACCATTCACATCGCCATTCCCCTCTGCTCTGCCATTCTGCTGTCTTTGAGCCTTTCCCCCGCCGGTTTGGCTTTG--GCAACCCCTCACC--CTCATGGTGGGGTTGGGGCTCAAAGATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTCAAACAACAC---ACAACCCCAACTCA--TACACTCCACATGATGCTGACTATCAACCACAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACCATAGCCCGGCATTCATTCCAACTCATGCTAATTCATTACCTCGACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATCCTCATCATTGCCGCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATTGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_965A         CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTTAGTCACCATCTGCTCAGCTCACCATCCCCATCGCCATCTCCT---GCTCTGCCATTATGCTGTCTTTGGGCCTTTCCCC-GCTGGTTTGGCTTTGTGGCAACCCCTCACCTTCTCATGGTGGGGCTGGGGCTCAAAGATTTTCACTTGGCTGCGCACAGACCCACTTACCCCGCGTTGAAACATCACCAAGCAACCCCAACTCATCTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTTTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTAGGTCGCACTA--GCCTCGCATTCATTCCAACTCATGCTAAT-CAATACCTCAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATCGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_J2_a         CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATCCTCATCACCATTTCCCTCTGCTCTGCCATTCTGTTGTCTTTGGGCCTTTCCCC-GCTGGTTTGGCTTTGTGGCAACCCCTCACC---TTATGGTGGGGTTGGGACTCAAAGATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTCGAACAACACCAAGCAACTCCGACCCATTTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACTATAGCCCCGCATTCATTCCAACTCATGCTAATTCATTACCTTAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATTGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACCCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_J2A          CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATTCTCATCGCCATTTCCCTCTGTTCTGCCATTCTGCTGTCTTTGGGCCTTTCCCC-GCTGGTTTGGCTTTGTGGCAACCCCTCACC---TTATGGTGGGGTTGGGGCTCAAAGATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTTGAACAACACCAAGCAACTCCAACTCATCTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCATTATAGCCCCGCATTCATTCCAACTCATGCTAATCCATCACCTCAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATTGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_P2361_a      CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATCCCCATCGCCATCTCCTTCTGCTCTGCCATTATGCTGTCTTTGGGCCTTTCCCC-GCTGGTTTGGCTTTGTGGCAACCCCTCACCTTCTCATGGTGGGGCTGGGGCTCAAAGATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTGAAACATCACCAAGCAACCCCAACTCATCTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTAGGTCGCACTA--GCCTCGCATTCATTCCAACTCATGCTAAT-CAATACCTCAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATCGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_P2361A       CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACAATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATTCACATCGCCATTCCCTTCTGCTCTGCCACCCTGCTGTCTTTGGGCCTTTCCCC-GCTGGTTTGGCTTTGTGGCAACCCCTCACCTTCTCATGGTGGGGTTGGGGCTCAAAGATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTCAAACAACACCAAGCAACTCCAACTCATGTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACTGTAGCCTTGCATCCATTCCAACTCATGCTAATTCATTACCTCAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATCGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_P4460_a      CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATCCCCATCGCCATCTCCTTCTGCTCTGCCATTATGCTGTCTTTGGGCCTTTCCCC-GCTGGTTTGGCTTTGTGGCAACCCCTCACCTTCTCATGGTGGGGCTGGGGCTCAAAGATTTTCGCTTGGTTGCGCACAGACCCACTTACCCCGCGTTGAAACATCACCAAGCAACCCCAACTCATCTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTAGGTCGCACTA--GCCTCGCATTCATTCCAACTCATGCTAAT-CAATACCTCAACAGATGCCCCCGGCCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATCGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_P4460A       CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTTACCATTCCCATCGCCATATCCCTCTGCTCTGTCATTCTGCTGTCTTGGGGCCTTTCGCC-GCTGGGTTCGCTTTGTGGCAACCCCTCACCCTCTCATGGTGGGGTTGGGGCTCAAAGATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTGAAACACCACCAAGCAACCCCAACTCATCTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACTATAGGCTCGCATTCATTTCAACTCATGCTAATGCATTACTTCAACAGATGCCCCCGGCCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATTGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_P4492_a      CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATCCCCATCGCCATCTCCT---GCTCTGCCATTATGCTGTCTTTGGGCCTTTCCCC-GCTGGTTTGGCTTTGTGGCAATCCCTCACCTTCTCATGGTGGGGCTGGGGCTCAAAGATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTGAAACATCACCAAGCAACCCCAACTCATCTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTAGGTCGCACTA--GCCTCGCATTCATTCCAACTCATGCTAAT-CAATACCTCAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATCGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_P4492A       CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATCCCCATCGCCATCTCCTTCTGCTCTGCCATTATGCTGTCTTTGGGCCTTTCCCC-GCTGGTTTGGCTTTGTGGCAACCCCTCACCTTCTCATGGTGGGGCTGGGGCTCAAAGATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTAAAACATCACCAAGCAGCCCCAACTCATCTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTAGGTCGCACTA--GCCTCGCATTCATTCCAACTCATGCTAAT-CAATACCTCAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATCGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_P535_a       CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATCCCCATCGCCATCTCCTTCTGCTCTGCCATTATGCTGTCTTTGGGCCTTTCCCC-GCTGGTTTGGCTTTGTGGCAACCCCTCACCTTCTCATGGTGGGGCTGGGGCTCAAAGATTTTCGCTTGGTTGCGCACAGACCCACTTACCCCGCGTTGAAACATCACCAAGCAACCCCAACTCATCTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTAGGTCGCACTA--GCCTCGCATTCATTCCAACTCATGCTAAT-CAATACCTCAACAGATGCCCCCGGCCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATCGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_P535A        CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTTACCATTCCCATCGCCATATCCCTCTGCTCTGTCATTCTGCTGTCTTGGGGCCTTTCGCC-GCTGGGTTCGCTTTGTGGCAACCCCTCACCCTCTCATGGTGGGGTTGGGGCTCAAAGATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTGAAACACCACCAAGCAACCCCAACTCATCTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACTATAGGCTCGCATTCATTTCAACTCATGCTAATGCATTACTTCAACAGATGCCCCCGGCCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATTGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_P581_a       CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATCCCCATCGCCATCTCCTTCTGCTCTGCCATTATGCTGTCTTTGGGCCTTTCCCC-GCTGGTTTGGCTTTGTGGCAACCCCTCACCTTCTCATGGTGGGGCTGGGGCTCAAAGATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTGAAACATCACCAAGCAACCCCAACTCATCTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTAGGTCGCACTA--GCCTCGCATTCATTCCAACTCATGCTAAT-CAATACCTCAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGTCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATCGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_P581A        CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACAATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATTCACATCGCCATTCCCTTCTGCTCTGCCACCCTGCTGTCTTTGGGCCTTTCCCC-GCTGGTTTGGCTTTGTGGCAACCCCTCACCTTCTCATGGTGGGGTTGGGGCTCAAAGATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTCAAACAACACCAAGCAACTCCAACTCATGTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACTGTAGCCTTGCATCCATTCCAACTCATGCTAATTCATTACCTCAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATCGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_RLM131_a     CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTTACCATTCCCATCGCCATATCCCTCTGCTCTGTCATTCTGCTGTCTTGGGGCCTTTCGCC-GCTGGGTTGGCTTTGTGGCAACCCCTCACCCTCTCATGGTGGGGTTGGGGCTCAAAGATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTGAAACACCACCAAGCAACCCCAACTCATCTACACTCGACATGATGCTGACTATCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACTATAGGCTCGCATTCATTTCAACTCATGCTAATGCATTACTTCAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATTGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACTCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
Neurospora_tetrasperma_RLM131A      CACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTCAGTCACCATCTGCTCAGCTCACCATCCTCATCGCCATTTCACTCTGCTCTGCCATTCTGCTGTCTTTGGGCCTTTCCCC-GCTGGTTTGGCTTTGTGGCAACCCCTCACC---TTATGGTGGGGTTGGGG-TCAAAGATTTTCGCTTGGCTGCGCACAGACCCACTTACCCCGCGTTCGAACAACACCAAGCAACTCCGACTCATTTACACTCGACATGATGCTGACTACCAACTACAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCAAGTACTACGTCACCGTCATCGGTATGTCGCACTATAGCCCCGCATTCATTCCAACTCATGCTAATTCATTACCTTAACAGATGCCCCCGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGCGCTATTCTCATCATTGCCGCCGGTACCGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTCGCCTACACCCTCGGTGTCAAGCAGCTCATTGTTGCCATCAACAAGATGGACACCACCCAGTGGTCCCAGACCCGTTTCGAGGAGATCATCAAGGAGACCAAGAACTTCATCAAGAAGGTTGGCTACAACCCCGC
;
END;

[ The following blocks are output data for analysis step 6228 ]
BEGIN TREES;
      TITLE 'tef-1 TB';
      LINK TAXA = TaxaForAnalysisStep6228;
      TREE PAUP_1 = [&R] (Neurospora_tetrasperma_1941_a,(Neurospora_tetrasperma_4245a,Neurospora_tetrasperma_965A,Neurospora_tetrasperma_P2361_a,Neurospora_tetrasperma_P4492_a,Neurospora_tetrasperma_P4492A,Neurospora_tetrasperma_P581_a,((((Neurospora_tetrasperma_1941A,Neurospora_tetrasperma_P2361A,Neurospora_tetrasperma_P581A),(Neurospora_tetrasperma_965_a,Neurospora_crassa_tef_1)),(Neurospora_tetrasperma_J2A,(Neurospora_tetrasperma_3998A,(Neurospora_tetrasperma_J2_a,Neurospora_tetrasperma_RLM131A)))),(Neurospora_tetrasperma_RLM131_a,(Neurospora_tetrasperma_P4460A,Neurospora_tetrasperma_P535A))),(Neurospora_tetrasperma_P4460_a,Neurospora_tetrasperma_P535_a)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr20643]


END;