#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 20, 2025; 2:06 GMT TreeBASE (cc) 1994-2008 Study reference: Santos J.M., Vrandecic K., Cosic J., Duvnjak T., & Phillips A.J. 2011. Resolving the Diaporthe species occurring on soybean in Croatia. Persoonia, 27: 9-19. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10556] [ The following blocks are input data for analysis step 6830 ] BEGIN TAXA; TITLE TaxaForAnalysisStep6830; DIMENSIONS NTAX=27; TAXLABELS Diaporthe_caulivora_Dip1 Diaporthe_caulivora_Dpc1 Diaporthe_caulivora_Dpc11 Diaporthe_longicolla_1_2_4_3 Diaporthe_longicolla_PL4 Diaporthe_longicolla_PL7 Diaporthe_lusitanicae_EU814477 Diaporthe_lusitanicae_GQ250190 Diaporthe_melonis_FJ889447 Diaporthe_novem_3_27_3_1 Diaporthe_novem_5_27_3_1 Diaporthe_novem_5_27_3_3 Diaporthe_phaseolorum_AF001027 Diaporthe_phaseolorum_Ar2 Diaporthe_phaseolorum_FAU458_U11323_U11373 Diaporthe_phaseolorum_GQ149763 Diaporthe_phaseolorum_GQ149764 Diaporthe_phaseolorum_PS03 Diaporthe_phaseolorum_PS8 Diaporthe_phaseolorum_PSu1 Diaporthe_phaseolorum_var_caulivora_EU622854 Leucostoma_persoonii_DQ996042 Phomopsis_camptothecae_AY622996 Phomopsis_longicolla_EU650789 Phomopsis_sp_9_DQ286285 Phomopsis_sp_9_GQ250225 Valsa_ceratosperma_DQ241769 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M7530] TITLE ITS_Indels; LINK TAXA = TaxaForAnalysisStep6830; DIMENSIONS NCHAR=30; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4 5" MISSING=? GAP= -; MATRIX [ 10 20 30] [ . . .] Diaporthe_caulivora_Dip1 0011011---1-10100101---0001--0 Diaporthe_caulivora_Dpc1 0011011---1-10100101---0001--0 Diaporthe_caulivora_Dpc11 0011011---1-10100101---0001--0 Diaporthe_longicolla_1_2_4_3 01-11-001-1-101001001--01001-1 Diaporthe_longicolla_PL4 01-11-001-1-101001001--01001-1 Diaporthe_longicolla_PL7 01-11-001-1-101001001--01001-1 Diaporthe_lusitanicae_EU814477 01-11-01--1-111000001--0-101-1 Diaporthe_lusitanicae_GQ250190 01-11-01--1-111000001--0-101-1 Diaporthe_melonis_FJ889447 01-11-001-1-101101001--01001-1 Diaporthe_novem_3_27_3_1 01-11-01--1-111001001--0-101-1 Diaporthe_novem_5_27_3_1 01-11-01--1-111001001--0-101-1 Diaporthe_novem_5_27_3_3 01-11-01--1-111001001--0-101-1 Diaporthe_phaseolorum_AF001027 0011011---1-1010010001-00001-0 Diaporthe_phaseolorum_Ar2 01-11-01--1-101001001--00001-1 Diaporthe_phaseolorum_FAU458_U11323_U11373 01-11-01--1-101001101--00001-1 Diaporthe_phaseolorum_GQ149763 01-11-01--1-101001001--00001-1 Diaporthe_phaseolorum_GQ149764 01-11-01--1-101001001--00001-1 Diaporthe_phaseolorum_PS03 01-11-01--1-101001001--00001-1 Diaporthe_phaseolorum_PS8 01-11-01--1-101001001--00001-1 Diaporthe_phaseolorum_PSu1 01-11-01--1-101001001--00001-1 Diaporthe_phaseolorum_var_caulivora_EU622854 0011011---1-10100101---0001--0 Leucostoma_persoonii_DQ996042 100000000100000-10000011000010 Phomopsis_camptothecae_AY622996 01-11-01--1-101001001--00001-1 Phomopsis_longicolla_EU650789 01-11-001-1-101001001--01001-1 Phomopsis_sp_9_DQ286285 01-11-01--1-111001001--0-101-1 Phomopsis_sp_9_GQ250225 01-11-01--1-111001001--0-101-1 Valsa_ceratosperma_DQ241769 100100000001000-10000000000000 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M7529] TITLE ITS_DNA; LINK TAXA = TaxaForAnalysisStep6830; DIMENSIONS NCHAR=650; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Diaporthe_caulivora_Dip1 ---C-CACAACAC---AAAC--A{AGT}-A--{AG}T{ACT}--CAT--{ACG}-{AG}A-{AGT}--C???????????????????????????????????????????AGGGATCATTGCTGGAACGCGCCCCA-GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTT-ACTGTTGCCTCGGCGCAGGCCGGCCCCCTT---------GGGGGCCC------------------CCCGGAGACGGGGAGCAG-CCCGCCGGCGGCCAAGCTAACTCTTGTTTTTACACTG-AAACTCTGAGAAATAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGTTGGGGCACTGC-----------CTGTAAAAGG----GCAGGCCCTGAAATTCATTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTAAACCCTCGCTTTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGAT Diaporthe_caulivora_Dpc1 ---C-CACAACAC---AAAC--A{AGT}-A--{AG}T{ACT}--CAT--{ACG}-{AG}A-{AGT}-CC???????????????????????????????????????????AGGGATCATTGCTGGAACGCGCCCCA-GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTT-ACTGTTGCCTCGGCGCAGGCCGGCCCCCTT---------GGGGGCCC------------------CCCGGAGACGGGGAGCAG-CCCGCCGGCGGCCAAGCTAACTCTTGTTTTTACACTG-AAACTCTGAGAAATAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGTTGGGGCACTGC-----------CTGTAAAAGG----GCAGGCCCTGAAATTCATTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTAAACCCTCGCTTTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGAT Diaporthe_caulivora_Dpc11 ---C-CACAACAC---AAAC--A{AGT}-A--{AG}T{ACT}--CAT--{ACG}-{AG}A-{AGT}-CCC???????????????????????????????????????????AGGGATCATTGCTGGAACGCGCCCCA-GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTT-ACTGTTGCCTCGGCGCAGGCCGGCCCCCTT---------GGGGGCCC------------------CCCGGAGACGGGGAGCAG-CCCGCCGGCGGCCAAGCTAACTCTTGTTTTTACACTG-AAACTCTGAGAAATAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGTTGGGGCACTGC-----------CTGTAAAAGG----GCAGGCCCTGAAATTCATTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTAAACCCTCGCTTTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGA Diaporthe_longicolla_1_2_4_3 -CC-AAC-C-CACAACAAC--ACAAC-C-{ACT}-{AC}--{CG}-{CG}---?G-C---A-C-G---T???????????????????????????????????????????AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT--ACTGTTGCCTCGGCGCAGGCCGGCCTTTTGTG-----ACAAAGGCCC------------------CCTGGAGACAGGGAGCAG-CCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTG-AATCTCTGAGTACAAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------TCTCT-GACGGG--AGCAGGCCCTGAAATCTAGTGGCGAGCTCGCTAGGACCCCGAGCGTAGTAGTTATATC-TCGTTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTG Diaporthe_longicolla_PL4 -CC-AAC-C-CACAACAAC--ACAAC-C-{ACT}-{AC}--{CG}-{CG}---?G-C---A----???????????????????????????????????????????AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT--ACTGTTGCCTCGGCGCAGGCCGGCCTTTTGTG-----ACAAAGGCCC------------------CCTGGAGACAGGGAGCAG-CCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTG-AATCTCTGAGTACAAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------TCTCT-GACGGG--AGCAGGCCCTGAAATCTAGTGGCGAGCTCGCTAGGACCCCGAGCGTAGTAGTTATATC-TCGTTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCT Diaporthe_longicolla_PL7 -CC-AAC-C-CACAACAAC--ACAAC-C-{ACT}-{AC}--{CG}-{CG}---?G-C---A----???????????????????????????????????????????AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT--ACTGTTGCCTCGGCGCAGGCCGGCCTTTTGTG-----ACAAAGGCCC------------------CCTGGAGACAGGGAGCAG-CCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTG-AATCTCTGAGTACAAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------TCTCT-GACGGG--AGCAGGCCCTGAAATCTAGTGGCGAGCTCGCTAGGACCCCGAGCGTAGTAGTTATATC-TCGTTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCT Diaporthe_lusitanicae_EU814477 -CC-AC--C-CCCAACAAC--A-CAC-C{AGT}-A--{AG}T{ACT}---T{CG}-TA?-CA---T-C----???????????????????????????????????????????AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCC--ACTGTTGCCTCGGCGCAGGCCGGCCTCTTC-------ACTGAGGCCC------------------CCCCGAAAGGGGGAGCAG-CCCGCCGGCGGCCAACTAAACTCT-GTTTCTATAGTG-AATCTCTGAGTAAAAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------CTGTA---AAAG--GGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATT Diaporthe_lusitanicae_GQ250190 -CC-AC--C-CCCAAAAAC--A-CAC-C{AGT}-A--{AG}T{ACT}---T{CG}-TA?-CA--G-G-AC-A???????????????????????????????????????????AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCC--ACTGTTGCCTCGGCGCAGGCCGGCCTCTTC-------ACTGAGGCCC------------------CCCCGAAAGGGGGAGCAG-CCCGCCGGCGGCCAACTAAACTCT-GTTTCTATAGTG-AATCTCTGAGTAAAAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------CTGTA---AAAG--GGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATT Diaporthe_melonis_FJ889447 -CC-AAC-C-CACAACAAC--ACAAC-C{AGT}-A--{AG}T{ACT}--{AC}---?-{CG}---------???????????????????????????????????????????AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT--ACTGTTGCCTCGGCGCAGGCCGGCCTTTGTCA-----AAGAAGGCCC------------------CCTGGAGACAGGGAGCAG-CCCGCCGGCGGCCAACTAAACTCTTGTTTCTATAGTG-AATCTCTGAGTA-AAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------TCTCT-CGCGGG--AGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGAC Diaporthe_novem_3_27_3_1 -CC-AC--C-CCCAACAAC--A-CAC-C{AGT}-A--{AG}T{ACT}--?-{ACG}-{AC}-T-G--T-C???????????????????????????????????????????AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCC--ACTGTTGCCTCGGCGCAGGCCGGCCTCTTC-------ACTGAGGCCC------------------CCTGGAAACAGGGAGCAG-CCCGCCGGTGGCCAACTAAACTCT-GTTTCTATAGTG-AATCTCTGAGTAAAAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------CTGTA---AAAG--GGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCT Diaporthe_novem_5_27_3_1 -CC-AC--C-CCCAACAAC--A-CAC-C{AGT}-A--{AG}T{ACT}--?-{ACG}-{AC}---G--T-C???????????????????????????????????????????AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCC--ACTGTTGCCTCGGCGCAGGCCGGCCTCTTC-------ACTGAGGCCC------------------CCTGGAAACAGGGAGCAG-CCCGCCGGTGGCCAACTAAACTCT-GTTTCTATAGTG-AATCTCTGAGTAAAAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------CTGTA---AAAG--GGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCTGGAAGGCCCTGGCTGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCT Diaporthe_novem_5_27_3_3 -CC-AC--C-CCCAACAAC--A-CAC-C{AGT}-A--{AG}T{ACT}--?-{ACG}-{AC}---G--T-T???????????????????????????????????????????AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCC--ACTGTTGCCTCGGCGCAGGCCGGCCTCTTC-------ACTGAGGCCC------------------CCTGGAAACAGGGAGCAG-CCCGCCGGTGGCCAACTAAACTCT-GTTTCTATAGTG-AATCTCTGAGTAAAAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------CTGTA---AAAG--GGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCT Diaporthe_phaseolorum_AF001027 ---C-CACAACAC---AAAC--A{AGT}-A--{AG}T{ACT}---{ACT}A{CG}----{AG}T{AC}-A-AACAG-GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTGCTGGAACGCGCCCCA-GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTT-ACTGTTGCCTCGGCGCAGGCCGGCCCCCCT---------GGGGGCCC------------------CCCGGAGACGGGGAGCAG-CCCGCCGGCGGCCAAGTTAACTCTTGTTTTTATACTG-AAACTCTGAGAAATAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGTTGGGGCACTGCG---------TCTCTCGCGGGA--TGCAGGCCCTGAAATTCATTGGCGAGCTCGCCAGGACCCCGAGCGCAGTAGTTAAACCCTCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACC Diaporthe_phaseolorum_Ar2 -CC-AC--C-CACAACAAC--AAAAC-C{AGT}-A--{AG}T{ACT}---{ACT}A{CG}----{AG}T{AC}-A{AG}G??????????????????????TCTCCGTTGGTGAACCAGCGGAGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT--ATTGTTGCCTCGGCGTAGGCCGGCCTCTTC-------ACTGAGGCCC------------------CCTGGAAACAGGGAGCAG-CCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTG-AATCTCTGAGTAAAAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------TTTCGTCCAGAA--AGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACC Diaporthe_phaseolorum_FAU458_U11323_U11373 -CC-AC--C-CACAACAAC--AAAAC-C{AGT}-A--{AG}T{ACT}---{ACT}A{CG}----{AG}T{AC}--AT----TCCTGT-TCCT-T???????????????????????????????????????????AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT--ATTGTTGCCTCGGCGTAGGCCGGCCTCTTC-------ACTGAGGCCC------------------CCTGGAAACAGGGAGCAG-CCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTG-AATCTCTGAGTAAAAAA-CATAAATGAATCAAAACTTTCAA-------------------------------------------------------------------------------------------------------------------------------------------GCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------TTTCGTCCAGAA--AGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAA Diaporthe_phaseolorum_GQ149763 -CC-AC--C-CCCAAAAAC--A-CAC-C{AGT}-A--{AG}T{ACT}---{ACT}A{CG}----{AG}T{AC}-G-C----T??????????????????????TCTCCGTTGGTGAACCAGCGGAGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT--ATTGTTGCCTCGGCGTAGGCCGGCCTCTTC-------ACTGAGGCCC------------------CCTGGAAACAGGGAGCAG-CCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTG-AATCTCTGAGTAAAAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------TTTCGTCCAGAA--AGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATT Diaporthe_phaseolorum_GQ149764 -CC-AC--C-CACAACAAC--AAAAC-C{AGT}-A--{AG}T{ACT}---{ACT}A{CG}----{AG}T{AC}-G-C-----??????????????????????TCTCCGTTGGTGAACCAGCGGAGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT--ATTGTTGCCTCGGCGTAGGCCGGCCTCTTC-------ACTGAGGCCC------------------CCTGGAAACAGGGAGCAG-CCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTG-AATCTCTGAGTAAAAAA-CATAAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------TTTCGTCCAGAA--AGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATT Diaporthe_phaseolorum_PS03 -CC-AC--C-CACAACAAC--AAAAC-C{AGT}-A--{AG}T{ACT}---{ACT}A{CG}----{AG}T{AC}--{CG}AT???????????????????????????????????????????AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT--ATTGTTGCCTCGGCGTAGGCCGGCCTCTTC-------ACTGAGGCCC------------------CCTGGAAACAGGGAGCAG-CCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTG-AATCTCTGAGTAAAAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------TTTCGTCCAGAA--AGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGAC Diaporthe_phaseolorum_PS8 -CC-AC--C-CACAACAAC--AAAAC-C{AGT}-A--{AG}T{ACT}---{ACT}A{CG}----{AG}T{AC}--{CG}-???????????????????????????????????????????AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT--ATTGTTGCCTCGGCGTAGGCCGGCCTCTTC-------ACTGAGGCCC------------------CCTGGAAACAGGGAGCAG-CCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTG-AATCTCTGAGTAAAAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------TTTCGTCCAGAA--AGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACC Diaporthe_phaseolorum_PSu1 -CC-AC--C-CACAACAAC--AAAAC-C{AGT}-A--{AG}T{ACT}---{ACT}A{CG}----{AG}T{AC}--{CG}TC???????????????????????????????????????????AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT--ATTGTTGCCTCGGCGTAGGCCGGCCTCTTC-------ACTGAGGCCC------------------CCTGGAAACAGGGAGCAG-CCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTG-AATCTCTGAGTAAAAAA-CATAAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------TTTCGTCCAGAA--AGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGAC Diaporthe_phaseolorum_var_caulivora_EU622854 ??????????????????????TTTCCGTAGGTGAACCTGCGGAGGGATCATTGCTGGAACGCGCCCCA-GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTT-ACTGTTGCCTCGGCGCAGGCCGGCCCCCTT---------GGGGGCCC------------------CCCGGAGACGGGGAGCAG-CCCGCCGGCGGCCAAGCTAACTCTTGTTTTTACACTG-AAACTCTGAGAAATAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGTTGGGGCACTGC-----------CTGTAAAAGG----GCAGGCCCTGAAATTCATTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTAAACCCTCGCTTTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAA Leucostoma_persoonii_DQ996042 -CC-AC--C-CACAACAAC--AAAAC-C--TC-{CG}T-{AC}A---{AG}{CG}--?---{AGT}----A-G???????????????????????????????????????????AGGGATCATTGCTGGAA-GCGCCGCAAGGCGCAACCCAGAAACCCTTTGTGAACTTATACCTATATCGTTGCCTCGGCGCTGGCTGCCTCTCCCTCGT--GGAGGGGGCCCGCCTCTGGTCGTAAGAAAGCCAGGGGAGGACAGCAGGCCCGCCGGTGGCCTACCAAACTCTTGTATTGATCGAGTAAAATCTGAGTA--CATTTCTAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGTATTCCAGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTAGCTTGGTGTTGGGGCATTGCCTGA--CTGTTTT--AACAGGA-GGGCAAGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACTCCGAGCGCAGTAGTCAAACCCTCGCTCTGGATCGTACTGGCGCGGCCCTGCCGTAAAACCCCCAACTTCTGAAAATTT Phomopsis_camptothecae_AY622996 -CC-AC--C-CACAACCAC--AAAAC-C-{ACT}-{AC}--{CG}-{CG}-CA{AC}-T-T{ACT}-CA--A{CT}-GG---????????????????????????????????????CCAGCGGAGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT--ATTGTTGCCTCGGCGTAGGCCGGCCTCTTC-------ACTGAGGCCC------------------CCTGGAAACAGGGAGCAG-CCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTG-AATCTCTGAGTAAAAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------TTTCGTCCAGAA--AGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTCATATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAAT Phomopsis_longicolla_EU650789 ---C-CACAACAAAC-AAAAC-A-{ACT}-{AC}--{CG}-{CG}---?G-C---A--T--A---GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT--ACTGTTGCCTCGGCGCAGGCCGGCCTTTTGTG-----ACAAAGGCCC------------------CCTGGAGACAGGGAGCAG-CCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTG-AATCTCTGAGTACAAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------TCTCT-GACGGG--AGCAGGCCCTGAAATCTAGTGGCGAGCTCGCTAGGACCCCGAGCGTAGTAGTTATATC-TCGTTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCT Phomopsis_sp_9_DQ286285 -CC-AAC-C-CACCACAAC--ACAAC-C-{ACT}-{AC}--{CG}-{CG}-{CG}----{AGT}-G--G--????????????????????????????????????????????????TCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCC--ACTGTTGCCTCGGCGCAGGCCGGCCTCTTC-------ACTGAGGCCC------------------CCTGGAAACAGGGAGCAG-CCCGCCGGTGGCCAACTAAACTCT-GTTTCTATAGTG-AATCTCTGAGTAAAAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------CTGTA---AAAG--GGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTC Phomopsis_sp_9_GQ250225 -CC-AC--C-CCCAACAAC--A-CAC-C-{ACT}-{AC}--{CG}-{CG}-{CG}----G-G-AGG-???????????????????????????????????????????AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCC--ACTGTTGCCTCGGCGCAGGCCGGCCTCTTC-------ACTGAGGCCC------------------CCTGGAAACAGGGAGCAG-CCCGCCGGTGGCCAACTAAACTCT-GTTTCTATAGTG-AATCTCTGAGTAAAAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGC----------CTGTA---AAAG--GGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTC Valsa_ceratosperma_DQ241769 -CAAAAACCAAAACA{ACG}A-{CG}A-C-{AG}AT-{CG}--{AG}{AC}A-{AGT}-G-C---???????????????????????????????????????????AGGGATCATTGCTGGAA-GCGCCGCAAGGTGCA-CCCAGAAACCCTTTGTGAACTTATACCTACATCGTTGCCTCGGCGCTGGCTGCCCCTCCCGCCCTGGGAGGGGGCCCGCCTCTGGTCGTAA-AAACCCAGGGGAGGACAGCAGGCCCGCCGGCGGCCCAATTAACTCTTGTATTTACTGAGTAAAATCTGAGTA--AGCTTCTAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCAGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTTGCTTGGTGTTGGGGCATTACCTGAGACCGCCTCCGGGCGGGCCGGGTAAGCCCTGAAATTTAGTGGCGAGCTCGCCAGGACTCCGAGCGCAGTAGTAAAACCCTCGCTTTGGACTGTACTGGCGCGGCCCTGCCGTAAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGT ; END; [ The following blocks are output data for analysis step 6830 ] BEGIN TREES; TITLE ITS; LINK TAXA = TaxaForAnalysisStep6830; TREE Fig._2 = [&R] (Leucostoma_persoonii_DQ996042:0.086066,Valsa_ceratosperma_DQ241769:0.082494,((((Phomopsis_sp_9_DQ286285:0.00317,Diaporthe_novem_3_27_3_1:0.003299,Phomopsis_sp_9_GQ250225:0.003255,Diaporthe_novem_5_27_3_3:0.003337,Diaporthe_novem_5_27_3_1:0.006793,(Diaporthe_lusitanicae_EU814477:0.003413,Diaporthe_lusitanicae_GQ250190:0.003417)1.00:0.029281)1.00:0.052288,(Diaporthe_phaseolorum_GQ149763:0.003062,Diaporthe_phaseolorum_FAU458_U11323_U11373:0.003166,Phomopsis_camptothecae_AY622996:0.006309,Diaporthe_phaseolorum_Ar2:0.003254,Diaporthe_phaseolorum_PS8:0.003124,Diaporthe_phaseolorum_PS03:0.0032,(Diaporthe_phaseolorum_GQ149764:0.003159,Diaporthe_phaseolorum_PSu1:0.003069)0.97:0.006236)0.70:0.018191)0.98:0.039863,(Diaporthe_melonis_FJ889447:0.034768,(Phomopsis_longicolla_EU650789:0.003153,Diaporthe_longicolla_PL7:0.003226,Diaporthe_longicolla_PL4:0.003204,Diaporthe_longicolla_1_2_4_3:0.003118)0.99:0.03112)0.79:0.032029)1.00:0.143341,(Diaporthe_phaseolorum_AF001027:0.016601,(Diaporthe_phaseolorum_var_caulivora_EU622854:0.003677,Diaporthe_caulivora_Dip1:0.003429,Diaporthe_caulivora_Dpc11:0.003462,Diaporthe_caulivora_Dpc1:0.00348)0.98:0.037317)0.77:0.049336)1.00:0.455193); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr26548] END;