#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 12, 2025; 11:12 GMT TreeBASE (cc) 1994-2008 Study reference: Goodson B.E., Rehman S.K., & Jansen R.K. 2011. Molecular systematics and biogeography of Descurainia (Brassicaceae) based on nuclear ITS and non-coding chloroplast DNA. Systematic Botany, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11210] [ The following blocks are input data for analysis step 6940 ] BEGIN TAXA; TITLE TaxaForAnalysisStep6940; DIMENSIONS NTAX=27; TAXLABELS Aethionema_grandiflorum Arabidopsis_thaliana Arabis_alpina Brassica_rapa Cardamine_amara Descurainia_appendiculata_B126 Descurainia_artemisioides_B36 Descurainia_cumingiana_tenuissima_D43 Descurainia_incisa_D57 Descurainia_incisa_D6 Descurainia_incisa_paysonii_D73 Descurainia_kochii_D2 Descurainia_millefolia_B24 Descurainia_paradisa_C7 Descurainia_pinnata_C14_type_1 Descurainia_pinnata_C3_type_2 Descurainia_pinnata_D10 Descurainia_sophia_MB3 Descurainia_tanacetifolia_C6 Descurainia_virletii_C39 Hornungia_alpina Hornungia_petraea Hornungia_procumbens Ianhedgea_minutiflora_MB2 Robeschia_schimperi_MB1 Rorippa_indica Tropidocarpum_gracile ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M7828] TITLE Descurainia_ITS_Alignment_for_Divergence_Time_Estimates; LINK TAXA = TaxaForAnalysisStep6940; DIMENSIONS NCHAR=618; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Aethionema_grandiflorum ??????????????????????????????????????????ACTCTCGGTGAACCAGGCT-TTAACCGGTCCTGTGTTCACTGACTCCAAGTATCCGCGAACGTCCTTCTCAGAGTTCTCT---TTGGGTTGGAT-TGTGACCGGCTTTCCTTGGATATCACAAAACCCCGGCATTAAAAGTGCCAAGGAACATTGAACGAAATGGTCTGCGTTT-GC-GACCCGGAGACGGTGT--ATGCAAACGTGGTGCCAGTATCTAAAGTCTAAA-CGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTCAAGCCTTCGGGCCGAGGGCACGTCTGCCTGGGTGTCACAAAACGTCGTCCCCCC---ATCCATCTT-GGAT---ATGGGACGGAAGTTGGTCTCCCGTGTGGTACCGCACGCGGTTGGCCTAAATCCGAGCCAAGGGCAGCAAGACTGTCCCGACTAGCGGTGGTGAACAAAAGCC-TCTTGTTATA--GTCGGGTTGCTCTTCTTGTCCGTGAGCTTT-AAGATG Arabidopsis_thaliana TACCTGTCCAAAACAGAACGACCCG-CGAACCAAAGATCACCACTCTCGGTGGGCCGGTTTCTTAGCCGATTCCTTGCCCGCCGGATCCGTGGTTTCGCGTATCGGCATGATCGGGAGCTTTTATCTCGGTCTTGT-CGTGCGCGTTGCT-TCCGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAAACGAACGGCTGGCATTC-GCCTCCCCGGAGACGGAGTGTGGGCGGATGCTGTGCTGCGAACTGAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCT-CACCATCCTTTGC-TGAT---GCGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCTAAATCCGAGCCAAGGACGCCTGGAGCGTACCGACATGCGGTGGTGAACTTGATCCATTACATT---TTATCGGTC-GCTCT---TGTCCGGAAGCTG--TAGATG Arabis_alpina TACCTGTCCAAAACAGAACAACCCG-CGAACGAACGATCATCACTCTCGGTTGGCCGGTTTCTTAGTTGATCCCGAGCCTGCCGATTCCGTGGTTCCGCGTACTTGTCCTCATGGGTCATT---------------------TGCGTAGCTCCCGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAATAAAACAGCCTGCTTTT-GCTGCCCCGGAGACGGCGTGTGCGCTTAAGCTGTGCTGCAATATAAAGTCTATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCTGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCC-----ATCCTTTGC-GGAT---ACCGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCTAAATCTGAGCTGAGGACGCCTGGAGCGTCTCGACATGCGGTGGTGAA-ACAAACC---TCGTCATTTTGTCGGTC-GCTCC---TGTCCAAATGCTC--TCGATG Brassica_rapa ??????????????????????????????????????????ACTCTCGGTAGGCCGGTTTCTTA-------CTGTGCCTGCCGATTCCGTGGTTATGCGTTCATCCTTGGCCAAGACTTCA--GTTTTGTTGGA--TCGTACGCATAGCTTCCGGATATCACCAAACCCCGGCATGAAAAGTGTCAAGGAAAATGCAACTAAACAGCCTGCTTTC-GCCAACCCGGAGACGGTGTTTGTTCGGAAGCAGTGCTGCAATGTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCCCC---ATCCTCTTGAGGAT---ATGGGACGAAAGCTGATCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCTAAGGACGTCAGGAGCGTCTTGACATGCGGTGGTGAATTTAATTC---TCGTCATATAGTCAGAC-GTTCC---GGTCCAAAAGCTC--TTGATG Cardamine_amara ATCCTGTCCAAAACAGAACGACCCG-CGAACCAAAGATCATCACTCACGGTGAGCCGGTTTCTTAGCTGAGATCGTGCCTGCCGAATCCGTGGTTTCGCGAACAATCCTTACCGGGAGCTCT-ATCTCTGTTTGGATTGTGCGCGTTGCT-TCCGGATATCACAAAACCACGGCACGAAAAGTGTCAAGGAACATGCAATTGAACAGCCAGCCTTC-GCCTCCCCGGAGACGGTGTGTGTGCGGATGCTGCGCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCTCT--CATCCTTTTA-GGAC---GTGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCGAGAGCGTCACGACATGCGGTGGTGAACTAAAGCC---TCTTCGTATCGTCGGTC-GTTCT---TGTCCATAAGCTC--TCGATG Descurainia_appendiculata_B126 TACCTGTCCAAAACAGAACGACCCG-TGAACATACGATCATCACTTACGGTGGGCCGGTTTCTTAGCTGATCCCGTGCTTGCCGAATCCGTGGCTTCGTGTTCCTTCCCACTCGGGAGCTCT-ATCTCGGTTGGGT-CGTGCGCGTAGCT-TCTGGATATAACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACAGAACAGCCATCCTTT-GCCTCCCCGGAAACGGTCCGAGTGTGGATGATGCGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCC----AATCCTTTAC-GGAT--AATGGGACGGAAGTTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCCAAGGACGCCTTGAGCGCTCCGACATGCGGTGGTGCGTTAAACAAGCTGCTTT-AAGTGTCGGTC-GTTCT---TGTCCGAAAGCTC--TTGATG Descurainia_artemisioides_B36 TACCTGTCCAAAACAGAACGACCCG-TGAACAAACGATCATCACTTGCGG?GGGCCGGTTTCTTAGCTGATCCCGTGCTTGCCGAATCCGTTGCTTCGTGTTCCTTCCCACTCGGGAGCTCT-ATCTCGGTTGGGT-CGTGCACGTAGCT-TCTGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGACCATGCAACAGACCGGCCATCATT?-GCCTCCCCGGAAACGGTGCGAGTGCGAATGATGCGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCC----AATCCTTTAC-GGA?--AA?GGGACGGAAGTTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCCAAGGACGCCTTGAGCGCTCCGACATGCGGTGGTGAGTTCAACAAGCTGCTTTT?AGTGTCGGTC-GTTCT---TGTCCAAAAGCTC--TTGAAG Descurainia_cumingiana_tenuissima_D43 TACCTGTCCAAAACAGAACGACCCG-TGAACATACGATCATCACTTGCGGTGGGCCGGTTTCTTAGCTGATCCCGTGCTTGCCGAATCCGTGGCTTCGTGTTCCTTCCCACTCGAGAGCTCT-ATCTCGGTTGGGT-CGTGCGCGTAGCT-TCTGGATATAACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACAGAACGGCCATCGTTT-GCCTCCCCGGAAACGGTCCGAGTGTGGATGATGCGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCTCCCCAAGCCTTCTGGCCGACGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCC----AATCCTTTAC-GGAT--AATGGGACGGAAGTTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCCAAGGACGCCTTGAGCGCTCCGACATGCGGTGGTGCGTTAAACAAGCTGCTTT-AAGTGTCGGTC-GTTCT---TGTCCGAAAGCTC--TTGATG Descurainia_incisa_D57 TACCTGTCCAAAACAGAACGACCCG-TGAACCAACGATCATCACTTTCGGTGGGCCGGTTTCTTAGCTGATCCCGTGCTTGCCGAATCCGTGGCTTTGTGTTCCTTCCCAGTCGGGAGCTCT-ATCTCGGTTGGGT-CGTGCACCTAGCT-TCTGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACAGAACAGCCATCATTT-GCCTCCCCGGAAACGGTGCGAGTGCGGATGATGCGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCC----AATCCTTCAC-GGAT--AATGGGACGGAAGTTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCCAAGGACGCCTTGAGCGCTCCGACATGCGGTGGTGCGTTAAACATGCTGCTTT-AAGTGTCGGTC-GTTCT---TGTCCGAAAGCTC--TTGTTG Descurainia_incisa_D6 TACCTGTCCAAAACAGAACGACCCG-TGAACCAACGATCATCACTTTCGGTGGGCCGGTTTCTTAGCTGATCCCGTGCTTGCCGAATCCGTGGCTTCGTGTTCCTTCCCAGTCGGGAGCTCT-ATCTCGGTTGGGT-CGTGCACGTAGCT-TCTGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACAGAACGGCCATCATTT-GCCTCCCCGGAAACGGTGCGATTGCGGATGATGCGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCC----AATCCTTCAC-GGAT--AATGGGACGGAAGTTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCCAAGGACGCCTTGAGCGCTCCGACATGCGGTGGTGCGTTAAACATGCTGCTTT-AAGTGTCGGTC-GTTCT---TGTGCGAAAGCTC--TTGTTG Descurainia_incisa_paysonii_D73 TACCTGTCCAAAACAGAACGACCCG-TGAACCAACGATCATCACTTTCGGTGGGCCGGTTTCTTAGCTGATCCCGTGCTTGCCGAATCCGTGGCTTCGTGTTCCTTCCCAGTCGGGAGCTCT-ATCTCGGTTGGGT-CGTGCACGTAGCT-TCTGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACAGAACGGCCATCATTT-GCCTCCCCGGAAACGGTGCGAGTGCGGATGATGCGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCC----AATCCTTCAC-GGAT--AATGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCCAAGGACGCCTTGAGCGCTCCGACATGCGGTGGTGCGTTAAACAAGCTGCTTT-AAGTGTCGGTC-GTTCT---TGTCCGAAAGCTC--TTGTTG Descurainia_kochii_D2 TACCTGTCCAAAACAGCACGACCCG-CGAACCAACTATCATCACTCGCGGTGGGCCGGTTTCTTAACTGATGCCGTGCTTGCCGGTTCCGTGGTTTCGCGTTCTGTTCCAGTTGGGAGCTCT-ATCTTGGCTGGTT-CGTGCGCGTAGCT-TCCGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACAGAATGGCCATCATTA-GCCTCCCCGGAGACGGTGTGAGTGCGGATGATGCGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCCCC--AATCCTTTAC-GGAT--AGTGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCTAAGGACGCCTTGAGCGTTCCGACATGCGGTGGTGAGTTTAACAAGCTGCTTT-ATGTGTCGGTT-GTTCT---TGTCCGAAAGCTC--ATGATG Descurainia_millefolia_B24 TACCTGTCCAAAACAGAACGACCCG-TGAACAAACGATCATCACTTGCGGTGGGCCGGTTTCTTAGCTGATCCCGTGCTTGCCGAATCCGTTGCTTCGTGTTCCTTCCCACTCGGGAGCTCT-ATCTCGGTTGGGT-CGTGCACGTAGCT-TCTGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACAGAACGGCCATCATT?-GCCTCCCCGGAAACGGTGCGAGTGCGGATGATGCGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGACTCTCGCATCGATGAAAAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAA?CATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCC----AATCCTTTAC-GGA?--AG?GGGACGGAAGTTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCCAAGGACGCCTTGAGCGCTCCGACATGCGGTGGTGAGTTCAACAAGCTGCTTTTAAGTGTCGGTC-GTTCT---TGTCCAAAAGCTC--TTGAAG Descurainia_paradisa_C7 TACCTGTCCAAAACAGAACGACCCG-TGAACCAACGATCATCACTTTCGGTGGGCCGGTTTCTTAGTTGATCCCGTGCTTGCCGAATCCGTGGCTTCGTATTCCTTCCCAGTCGGGAGCTCT-ATCTCGGTTGGGT-CGTGCACGTAGCT-TCTGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACAGAACGGCCATCATTT-GTCTCCCCGGAAACGGTGTGAGTGCGGATGATGCGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCCC---AATCCTTTAC-GGAT--AATGGGACGGAAGTTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCCAAGGACGCCTTGAGCGCCCCGACATGCGGTGGTGAGTTCAACAAGCTGCTTT-AAGTGTCGGTC-GTTCT---TGTCTAAAAGCTC--TTGAAG Descurainia_pinnata_C14_type_1 TACCTGTTCAAAACAGAACGACCCG-TGAACATACGATCATCACTTGTGGCGGGCCGGTTTCTTAGCTGATCCCGTGCCTGCCGAATCCGTGGTTTCGTGTTCCTTCCCACTCGGGAGCTCT-ATCTCGGTTGGGT-CGTGCGCGCAGCT-TCTGGATATAACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACAGAATGGCCATCCTTT-GCCTCCCCGGAAACGGTCCGAGTGTGGATGATGCGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAAAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCC----AATCCTTTAC-GGAT--AATGGGACGGAAGTTGGTCTCCCGTGTGTTACCGCATGCGGTTGGCCAAAATCCGAGCCAAGGACGCCTTGAGCGCTCCGACATGCGGTGGTGCGTTAAACAAGCTGCTTT-AAGTGTCGGTC-GTTCT---TGTCCGAAAGTTC--TTGATG Descurainia_pinnata_C3_type_2 TACCTGTCCAAAACAGAACGACCCG-TGAACCAACGATCATCACTTTCGGTGGGCCGGTTCCTTAGCTGATCCCGTGCTTGCCGAATCCGTGGCTTCGTGTTCCTTCCCAGTCGGGGGCTCT-ATCTCGGTTGGGT-CGTGCACGTAGCT-TCTGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACAGAACGGCCATCATTT-GTCTCCCCGGAAACGGTGCGAGTGCGGATGATGCGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCACC---AATCCTTTGC-GGAT--AATGGGGCGGAAGTTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCCAAGGACGCCTTGAGCGCTCCGACATGCGGTGGTGAGTTCAACAAGCTGCTTT-AAGCGTCGGTC-GTTCT---TGTCTAAAAGCTC--TTGAAG Descurainia_pinnata_D10 TACCTGTTCAAAACAGAACGACCCG-TGAACATACGATCATCACTTGCGGCGGGCCGGTTTCTTAGCTGATCCCGTGCTTGCCGAATCCGTGGTTTCGTGTTCCTTCCCACTCGGGAGCTCT-ATCTCGGTTGGGT-CGTGCGCGCAGCT-TCTGGATATAACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACAGAACGGCCATCCTTT-GCCTCCCCGGAAACGGTCCGAGTGTGGATGATGCGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCC----AATCCATTAC-GGAT--AATGGGACGGAAGTTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCCAAGGACGCCTTGAGCGCTCCGACATGCGGTGGTGCGTTAAACAAGCTGCTTT-AAGTGTCGGTC-GTTCT---TGTCCGAAAGCTC--TTGATG Descurainia_sophia_MB3 TACCTGTCCAAAACAGAACGACCCG-CGAACCAACGATCATCACTCGCGGTGGGCCGGTTTCTTAACTGATCCCGTGCTTGCCGGATCCGTGGTTTCGCGTTCTGTTCCAGTCGGGAGCTCT-ATCTTGACTGGTT-CGTGCGCGTAGCT-TCCGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACAGAACGGCCATCTTTTTGCCTCCCCGGAGACGGTGCGAGTGCGGATGATGCGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCCCC--AATCCTTTAC-GGAT--AATGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCCAAGGATGCCTTGAGCGTTCCGACATGCGGTGGTGAGTTTAACAAGCTGCTTT-ATATGTTGGTC-GTTCT---TGTCCGAAAGCTC--TTGATG Descurainia_tanacetifolia_C6 TACCTGTCCAAAACAGAACGACCCGATGAACCAACGATCATCACTTGCGGTGAGCCGGTTTCTTAGCTGATCCCGTGCTTGCCGAATCCGTTGCTTCGTGTTCCTTCCCACTCGGGAGCTCT-ATCTCGGTTGGGT-CGTGCACGTAGCT-TCTGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACAGAACGGCCATCATTT-GCCTCCCCGGAAACGGTGCGAGTGCGGATGATGCGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCC----AATCCATTAC-GGAT--AATGGGACGGAAGTTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCCAAGGACGCCTTGAGCGCTCCGACATGCGGTGGTGAGTTCAACAAGCTGCTTTTAAGTGTCGGTC-GTTCT---TGTTCAAAAGCTC--TTGAAG Descurainia_virletii_C39 TACCTGTTCAAAACAGAACGACCCG-TGAACATACGATCATCACTTGCGGCGGGCCGGTTTCTTAGCTGATCCCGTGCTTGCCGAATCCGTGGTTTCGTGTTCCTTCCCACTCGGGAGCTCT-ATCTCGGTTGGGT-CGTGCGCGCAGCT-TCTGGATATAACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACAGAACGGGCATCCTTT-GCCTCCCCGGAAACGGTCCGAGTGTGGATGATGCGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCC----AATCCTTTAC-GGAT--AATGGGACGGAAGTTGGTCTCCCGTGTGTTACCGCATGCGGTTGGCCAAAATCCGAGCCAAGGACGCCTTGAGCGCTCCGACATGCGGTGGTGCGTTAAACAAGCTGCTTT-AAGTGTCGGTC-GTTCT---TGTCCGAAAGCTC--TTGATG Hornungia_alpina ATCCTGTTTAAAACAGAATGACCCG-TGAACCAAAGATCATCACTCACGGTGGGCCGTTTTCTTAGCTGATCTCGTGCCTGCCGAATCCGTGGTTTCGATTTCTGTTCTGGTCGGGATCACA-ATCTCGGCTGGTT-CGTGCTCGGAGCT-TCCGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACATAACGGCCAGCTTCT-GCCTCCTTGGAG----------TGCGGATTCTGTGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGACGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCAAAC-TTATCCTT-AC-GGAT--AACGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCCAAGGATGCTATGAGCGTCCCGACATGCGGTGGTGAGTTTAACAGGCTTCTTCGTACTGTCGTTC-GTTCT----GTCCGAAAGCTC--TAGATG Hornungia_petraea ATCCTGTTCTAAACAGAACGACCCG-TGAACTAACGATCATCACTCACGGAAGGCCGTTTTCTTAGCTGATCTCGTGCCTTCCGAATCCGTGGTCTCGTGTGCCGTCCTTGTCTAGATCTAT-ATCTCGCATTGGC-TGTGCACGTAGCT-TCCGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACATATCGGCCAGTTTTC-GCTTCCTTGGAG----------TGCGGATTCTGTGCTGTGATCTAAAGTCTATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTT-TGGCCGAGGGCACGTCTTCCTGGGTGTCACAAATCGTCGTCCAAAC-TTATCCTT-A--GGAT--AATGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCTAAATCCGAGCCAAGGATGCCATGAGCGTCCCGACATGCGGTGGTGAGTGTAACAAGCTTCTTCGTATCGTCGTTC-GTTCT----GTCCGAAAGCTC--AAGATG Hornungia_procumbens TACCTGTCCAAAACAGAACGACCTG-TGAACTAACGATCATCACTCATGGTGGGCCGGTTTCTTAGCTGATCTCGTGCCTGCCTGATCCGTGGTTTTGTATACTGTCTCTTTCAGGATTTTT-ATCTAGTCAGGGA-CGTGTGCTTGGCT-TCCGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACAGAACAGTCAGCTTTT-GCTTCCCCGGAGACGGTGTGAGTGCAGAAGTTGTGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGTCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCCCC-TTATCCTT-AC-AGAT--AGTGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCATGCGGTTGGCCAAAATTCGAGCCAAGGATGTCATTAGCGTCCCGACATGCGGTGGTGAGTTAAACAAGCTTCTT-GTATTGTCGGAC-GTTTT----GACTGAAAGCTC--TAGATG Ianhedgea_minutiflora_MB2 TACCTGTCCAAAACAGAACGACCCG-CGAACCAACGATCATCACTCTCGGTAGGCTGGTTTCTTAACTGATGCTATGCCTACCGAATCCGTGGTTTCGTGTTCCATCCCAGTCGAGACCTCT-ATCTTGGTTGGGT-TGTGCGCGTTGCC-TCCGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACATAACGGCCAGCTTTT-GCCTCCCCGGAGACGGTGTGAGTGCGGATGCTGCGCTGTGATATAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTTTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCCCC---ATTCTTTAA-GAATT--GCGAGACGGAAGATGGTCTCCCGTGTGTTACCGCACGCGGTTG?CCAAAATCCGAGCTAAGGACGTAGAGAGCGTTCTGACATGCGGTGGTGAGTCTAACAAGCTGCTTT-TAATGTTGGTC-GTTCT---TGTCCGAAAGCTCTTTAAATG Robeschia_schimperi_MB1 TACCTGTCCAAAACAGAACGACCCG-TGAATAAACGATCACCACTCGCAGTGGGCCGGTTTCTTAGCTGATCCCGTGCTTGCTGGATCCGTGGTTGCACGTTCCGTACCAGTCGGGAGCTCT-ATCTCGGTTGAGG-CGTGCGTGTAGCT-TTCGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCATCAGAACGGACATCATTTTGCCTCCCCGGAGACGGTGCGAGTGACAATGATGCGCTGTGATCTAAAGTCTAGAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCCCCCTAATCCTTTA--GGAT--AACGGGACGGAAGCTGGTCTCCCGGGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCTTAGGACGCCAGTAGCGTTCCGACATGCGGTGGTGAGTTAAACAAGCTGCTTT-TATTGTCG-TC-GCTCT---TGTCCGAAAGCTC--TAGATG Rorippa_indica ATCCTGTCCAAAACAGAACGACCCG-CGAACCAAAGATCATCACTCACGGTGGGCCGGTTTCTTAGCCGAGATCGTGCCTGCCGAATCCGTGGTTTCGCGAGCAATCCTTACCGGGAGCTCT-ATCTCGGTTTGGGTCGTGCGCGTTGCT-TCCGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAATTGAACAGCCAGCCTTC-GCCTCCCCGGTCACGGTGCGTGTGCGGTTGCTGTGCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCTCT--CATCCTTCTC-GGAT---ATGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCATGCGGTTGGCCGAAATCCGAGCTAAGGACGCCGAGTGCGTCACGACATGCGGTGGTGAACTAAAGCC---TCTTCGTATCGTCGGTC-GTTCT---TGTCCGGAAGCTC--TCGATG Tropidocarpum_gracile TACCTGTCCAAAACAGAACGACCCG-TGAACCAACGATCATCACTCACGGTGGGCCGGTTTCTTAGCTGATCTCGTGCCTGCCGTATCCGTGGTTTCGTGCAGTGTCTCGGTTGAGATCTAT-GTCTCGATCGGGT-CGTGTGCGTTGCT-TCCGGATTTCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACAGAACGGCAAGGCTCT-GCCTCCCTGGAAACGGTGTGAGTGCGGACGCTGCGCTGTGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCCCC-TTATCCTT-CT-GGATGATCTGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCAAAGGATGCCATGAGCGTCCCGACATGCGGTGGTGAGTTCAACAAGC-CCTT-GTATCGTCGGTC-GTTCA----ATCCGGAAGCTC--TAGATG ; END; [ The following blocks are output data for analysis step 6940 ] BEGIN TREES; TITLE ML_derived_from_reduced_ITS_data_set; LINK TAXA = TaxaForAnalysisStep6940; TREE PAUP_1 = [&R] ((((((((((Descurainia_paradisa_C7,Descurainia_pinnata_C3_type_2),((Descurainia_artemisioides_B36,Descurainia_millefolia_B24),Descurainia_tanacetifolia_C6)),(((Descurainia_appendiculata_B126,(Descurainia_pinnata_D10,(Descurainia_pinnata_C14_type_1,Descurainia_virletii_C39))),Descurainia_cumingiana_tenuissima_D43),((Descurainia_incisa_D6,Descurainia_incisa_D57),Descurainia_incisa_paysonii_D73))),(Descurainia_kochii_D2,Descurainia_sophia_MB3)),Robeschia_schimperi_MB1),Ianhedgea_minutiflora_MB2),((Hornungia_alpina,Hornungia_petraea),(Hornungia_procumbens,Tropidocarpum_gracile))),(Arabidopsis_thaliana,(Cardamine_amara,Rorippa_indica))),(Brassica_rapa,Arabis_alpina)),Aethionema_grandiflorum); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr27615] END;