#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 18, 2024; 0:18 GMT

TreeBASE (cc) 1994-2008

Study reference:
Gonthier P., & Garbelotto M. 2011. Amplified fragment length polymorphism and sequence
analyses reveal massive gene introgression from the European fungal pathogen
Heterobasidion annosum into its introduced congener H. irregulare. Molecular
Ecology, 20: 2756–2770.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S11269]

[ The following blocks are input data for analysis step 6985 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep6985;
        DIMENSIONS NTAX=31;
        TAXLABELS
            Heterobasidion_annosum_sensu_stricto_108OA
            Heterobasidion_annosum_sensu_stricto_109SA
            Heterobasidion_annosum_sensu_stricto_137OC
            Heterobasidion_annosum_sensu_stricto_141SA
            Heterobasidion_annosum_sensu_stricto_BM39NA
            Heterobasidion_annosum_sensu_stricto_BM41NF
            Heterobasidion_annosum_sensu_stricto_BM42SA
            Heterobasidion_insulare_ATCC_26719
            'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 10SA'
            'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 115OG'
            'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 116EG'
            'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 12SA'
            'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 136SG'
            'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 144OB'
            'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 150EA'
            'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 41SB'
            'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 45EH'
            'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 51OA'
            'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 57SA'
            'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 6EA'
            'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 7NC'
            'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 81EB'
            'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 84SB'
            'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 89NB'
            Heterobasidion_irregulare_127NA
            Heterobasidion_irregulare_29NA
            Heterobasidion_irregulare_38NA
            Heterobasidion_irregulare_3OA
            Heterobasidion_irregulare_56EC
            Heterobasidion_irregulare_59SA
            Heterobasidion_irregulare_8OB
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M7984]

	TITLE Heterobasidion_annosum_EFA_Alignment;
	LINK TAXA = TaxaForAnalysisStep6985;
	DIMENSIONS NCHAR=324;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=- GAP= -;

MATRIX
[                                                                                                   10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320    ]
[                                                                                                    .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .    ]
Heterobasidion_annosum_sensu_stricto_108OA                                                  ATTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAGGGCTCCTTCAAGTATGGTATGTGGATGGATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAGGTACATGGTCACTGTACGTAGATCATGCTTATAGT
Heterobasidion_annosum_sensu_stricto_109SA                                                  ATTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAGGGCTCCTTCAAGTATGGTATGTGGATGGATTTTGTCGATCTCTAGTGGCGTAAACTTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAGGTACATGGTCACTGTACGTAGATCATGCTTATAGT
Heterobasidion_annosum_sensu_stricto_137OC                                                  ATTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGTAAGGGCTCCTTCAAGTATGGTATGTGGATGGATTTTCTCGATCTCTAGTGGCGTAAACTTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAGGTACATGGTCACTGTACGTAGATCATGCTTATAGT
Heterobasidion_annosum_sensu_stricto_141SA                                                  ATTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAGGGCTCCTTCAAGTATGGTATGTGGATGGATTTTGTCGATCTCTAGTGGCGTAAACTTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAGGTACATGGTCACTGTACGTAGATCATGCTTATAGT
Heterobasidion_annosum_sensu_stricto_BM39NA                                                 ATTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGTAAGGGCTCCTTCAAGTATGGTATGTGGATGGATTTTCTCGATCTCTAGTGGCGTAAACTTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAGGTACATGGTCACTGTACGTAGATCATGCTTATAGT
Heterobasidion_annosum_sensu_stricto_BM41NF                                                 ATTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGTAAGGGCTCCTTCAAGTATGGTATGTGGATGGATTTTCTCGATCTCTAGTGGCGTAAACTTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAGGTACATGGTCACTGTACGTAGATCATGCTTATAGT
Heterobasidion_annosum_sensu_stricto_BM42SA                                                 ATTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGTAAGGGCTCCTTCAAGTATGGTATGTGGATGGATTTTCTCGATCTCTAGTGGCGTAAACTTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAGGTACATGGTCACTGTACGTAGATCATGCTTATAGT
Heterobasidion_insulare_ATCC_26719                                                          TTTTGCAGTCATCGGTCACGTCGACTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATTGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGGTATGCTGATGGATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCCATGTCGCGATACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAAATACATGGTCACTGTACGTAGATCATGCTTGTAGT
'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 10SA'    GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTGGATGGATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAAGTACATGGTCACTGTACGTAGAT---GCTTATAGT
'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 115OG'   GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATTGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTGGATGGATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAAGTACATGGTCACTGTACGTAGAT---GCTTATAGT
'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 116EG'   GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTGGATGGATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAAGTACATGGTCACTGTACGTAGAT---GCTTATAGT
'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 12SA'    ATTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGTAAGGGCTCCTTCAAGTATGGTATGTGGATGGATTTTCTCGATCTCTAGTGGCGTAAACTTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAGGTACATGGTCACTGTACGTAGATCATGCTTATAGT
'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 136SG'   GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATTGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTGGATGGATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAAGTACATGGTCACTGTACGTAGAT---GCTTATAGT
'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 144OB'   ATTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGTAAGGGCTCCTTCAAGTATGGTATGTGGATGGATTTTCTCGATCTCTAGTGGCGTAAACTTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAGGTACATGGTCACTGTACGTAGATCATGCTTATAGT
'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 150EA'   GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTAGATGAATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTTGAGACCCCTAAGTACATGGTCACCGTACGTAGAT---GCTTATAGT
'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 41SB'    ATTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAGGGCTCCTTCAAGTATGGTATGTGGATGGATTTTGTCGATCTCTAGTGGCGTAAACTTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAGGTACATGGTCACTGTACGTAGATCATGCTTATAGT
'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 45EH'    ATTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGTAAGGGCTCCTTCAAGTATGGTATGTGGATGGATTTTCTCGATCTCTAGTGGCGTAAACTTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAGGTACATGGTCACTGTACGTAGATCATGCTTATAGT
'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 51OA'    GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTAGATGAATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTTGAGACCCCTAAGTACATGGTCACCGTACGTAGAT---GCTTATAGT
'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 57SA'    GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTGGATGGATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAAGTACATGGTCACTGTACGTAGAT---GCTTATAGT
'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 6EA'     GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTGGATGGATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAAGTACATGGTCACTGTACGTAGAT---GCTTATAGT
'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 7NC'     GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTAGATGAATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTTGAGACCCCTAAGTACATGGTCACCGTACGTAGAT---GCTTATAGT
'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 81EB'    GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTGGATGGATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAAGTACATGGTCACTGTACGTAGAT---GCTTATAGT
'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 84SB'    GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTAGATGAATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTTGAGACCCCTAAGTACATGGTCACCGTACGTAGAT---GCTTATAGT
'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 89NB'    GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTGGATGGATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAAGTACATGGTCACTGTACGTAGAT---GCTTATAGT
Heterobasidion_irregulare_127NA                                                             GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTGGATGGATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAAGTACATGGTCACTGTACGTAGAT---GCTTATAGT
Heterobasidion_irregulare_29NA                                                              GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTGGATGAATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAAGTACATGGTCACTGTACGTAGAT---GCTTATAGT
Heterobasidion_irregulare_38NA                                                              GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATTGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTGGATGGATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAAGTACATGGTCACTGTACGTAGAT---GCTTATAGT
Heterobasidion_irregulare_3OA                                                               GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTGGATGAATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAAGTACATGGTCACTGTACGTAGAT---GCTTATAGT
Heterobasidion_irregulare_56EC                                                              GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTGGATGGATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTCGAGACCCCTAAGTACATGGTCACTGTACGTAGAT---GCTTATAGT
Heterobasidion_irregulare_59SA                                                              GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTAGATGAATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTTGAGACCCCTAAGTACATGGTCACCGTACGTAGAT---GCTTATAGT
Heterobasidion_irregulare_8OB                                                               GTTTATAGTCATCGGGCACGTCGATTCCGGCAAGTCCACCACCACTGGGCACTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCGCTGAGCTCGGCAAAGGCTCCTTCAAGTATGGTATGTAGATGAATTTTGTCGATCTCTAGTGGCGTAAAATTTTCTGATCTATGTCGCGGTACAGCTTGGGTGCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACGATTGATATCGCTCTCTGGAAATTTGAGACCCCTAAGTACATGGTCACCGTACGTAGAT---GCTTATAGT
;
END;

[ The following blocks are output data for analysis step 6985 ]
BEGIN TREES;
      TITLE Set_of_5_MPTs_from_EFA_Analysis;
      LINK TAXA = TaxaForAnalysisStep6985;
      TREE PAUP_5 = [&R] (Heterobasidion_insulare_ATCC_26719,((((Heterobasidion_annosum_sensu_stricto_BM41NF,Heterobasidion_annosum_sensu_stricto_BM42SA,Heterobasidion_annosum_sensu_stricto_BM39NA,Heterobasidion_annosum_sensu_stricto_137OC,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 144OB','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 45EH','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 12SA'),Heterobasidion_annosum_sensu_stricto_141SA,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 41SB',Heterobasidion_annosum_sensu_stricto_109SA),Heterobasidion_annosum_sensu_stricto_108OA),((('Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 7NC','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 150EA','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 51OA',Heterobasidion_irregulare_59SA,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 84SB',Heterobasidion_irregulare_8OB),Heterobasidion_irregulare_29NA,Heterobasidion_irregulare_3OA),'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 81EB','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 6EA',Heterobasidion_irregulare_56EC,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 89NB',Heterobasidion_irregulare_127NA,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 10SA','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 116EG','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 57SA')),('Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 115OG','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 136SG',Heterobasidion_irregulare_38NA));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr29996]


END;
BEGIN TREES;
      TITLE Set_of_5_MPTs_from_EFA_Analysis;
      LINK TAXA = TaxaForAnalysisStep6985;
      TREE PAUP_1 = [&R] (Heterobasidion_insulare_ATCC_26719,(((Heterobasidion_annosum_sensu_stricto_BM41NF,Heterobasidion_annosum_sensu_stricto_BM42SA,Heterobasidion_annosum_sensu_stricto_BM39NA,Heterobasidion_annosum_sensu_stricto_137OC,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 144OB','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 45EH','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 12SA'),Heterobasidion_annosum_sensu_stricto_141SA,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 41SB',Heterobasidion_annosum_sensu_stricto_109SA),Heterobasidion_annosum_sensu_stricto_108OA),(((('Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 7NC','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 150EA','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 51OA',Heterobasidion_irregulare_59SA,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 84SB',Heterobasidion_irregulare_8OB),Heterobasidion_irregulare_29NA,Heterobasidion_irregulare_3OA),'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 81EB','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 6EA',Heterobasidion_irregulare_56EC,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 89NB',Heterobasidion_irregulare_127NA,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 10SA','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 116EG','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 57SA'),'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 115OG','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 136SG',Heterobasidion_irregulare_38NA));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr29992]


END;
BEGIN TREES;
      TITLE Set_of_5_MPTs_from_EFA_Analysis;
      LINK TAXA = TaxaForAnalysisStep6985;
      TREE PAUP_4 = [&R] (Heterobasidion_insulare_ATCC_26719,(((Heterobasidion_annosum_sensu_stricto_BM41NF,Heterobasidion_annosum_sensu_stricto_BM42SA,Heterobasidion_annosum_sensu_stricto_BM39NA,Heterobasidion_annosum_sensu_stricto_137OC,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 144OB','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 45EH','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 12SA'),Heterobasidion_annosum_sensu_stricto_141SA,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 41SB',Heterobasidion_annosum_sensu_stricto_109SA),Heterobasidion_annosum_sensu_stricto_108OA),((('Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 7NC','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 150EA','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 51OA',Heterobasidion_irregulare_59SA,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 84SB',Heterobasidion_irregulare_8OB),Heterobasidion_irregulare_29NA,Heterobasidion_irregulare_3OA),'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 81EB','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 6EA',Heterobasidion_irregulare_56EC,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 89NB',Heterobasidion_irregulare_127NA,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 10SA','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 116EG','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 57SA',('Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 115OG','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 136SG',Heterobasidion_irregulare_38NA)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr29995]


END;
BEGIN TREES;
      TITLE Set_of_5_MPTs_from_EFA_Analysis;
      LINK TAXA = TaxaForAnalysisStep6985;
      TREE PAUP_2 = [&R] (Heterobasidion_insulare_ATCC_26719,(((Heterobasidion_annosum_sensu_stricto_BM41NF,Heterobasidion_annosum_sensu_stricto_BM42SA,Heterobasidion_annosum_sensu_stricto_BM39NA,Heterobasidion_annosum_sensu_stricto_137OC,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 144OB','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 45EH','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 12SA'),Heterobasidion_annosum_sensu_stricto_141SA,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 41SB',Heterobasidion_annosum_sensu_stricto_109SA),Heterobasidion_annosum_sensu_stricto_108OA),(((('Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 7NC','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 150EA','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 51OA',Heterobasidion_irregulare_59SA,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 84SB',Heterobasidion_irregulare_8OB),Heterobasidion_irregulare_29NA,Heterobasidion_irregulare_3OA),'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 81EB','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 6EA',Heterobasidion_irregulare_56EC,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 89NB',Heterobasidion_irregulare_127NA,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 10SA','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 116EG','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 57SA'),('Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 115OG','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 136SG',Heterobasidion_irregulare_38NA)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr29993]


END;
BEGIN TREES;
      TITLE Set_of_5_MPTs_from_EFA_Analysis;
      LINK TAXA = TaxaForAnalysisStep6985;
      TREE PAUP_3 = [&R] (Heterobasidion_insulare_ATCC_26719,((((Heterobasidion_annosum_sensu_stricto_BM41NF,Heterobasidion_annosum_sensu_stricto_BM42SA,Heterobasidion_annosum_sensu_stricto_BM39NA,Heterobasidion_annosum_sensu_stricto_137OC,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 144OB','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 45EH','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 12SA'),Heterobasidion_annosum_sensu_stricto_141SA,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 41SB',Heterobasidion_annosum_sensu_stricto_109SA),Heterobasidion_annosum_sensu_stricto_108OA),(('Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 7NC','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 150EA','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 51OA',Heterobasidion_irregulare_59SA,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 84SB',Heterobasidion_irregulare_8OB),Heterobasidion_irregulare_29NA,Heterobasidion_irregulare_3OA),'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 81EB','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 6EA',Heterobasidion_irregulare_56EC,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 89NB',Heterobasidion_irregulare_127NA,'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 10SA','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 116EG','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 57SA'),'Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 115OG','Heterobasidion irregulare - Heterobasidion annosum sensu stricto admixed genotype 136SG',Heterobasidion_irregulare_38NA);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr29994]


END;