#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on June 22, 2026; 16:02 GMT TreeBASE (cc) 1994-2008 Study reference: Vinnere pettersson O., Lantz H., & Leong S.L. 2011. Phylogeny and intraspecific variation of the extreme xerophile, Xeromyces bisporus. Fungal Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11521] [ The following blocks are input data for analysis step 7372 ] BEGIN TAXA; TITLE TaxaForAnalysisStep7372; DIMENSIONS NTAX=15; TAXLABELS Chrysosporium_inops_CBS297.95 Chrysosporium_xerophilum_CBS153.67 Eurotium_amstelodami_CBS518.65 Eurotium_herbariorum_CBS516.65 Monascus_argentinensis_CBS109402 Monascus_floridanus_ATCC64205 Monascus_kaoliang_CBS302.78 Monascus_lunisporas_CBS113675 Monascus_pallens_IMI356820 Monascus_paxii_1_FRR2193 Monascus_pilosus_FRR2194 Monascus_purpureus_FRR1596 Monascus_ruber_FRR2447 Monascus_sanguineus_IMI356821 Xeromyces_bisporus_FRR0525 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M8900] TITLE Beta_tubulin_alignment; LINK TAXA = TaxaForAnalysisStep7372; DIMENSIONS NCHAR=763; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Chrysosporium_inops_CBS297.95 ---------------------------------------TTTCAGATAATACACTTGTATAAAAGGAAAAAGGGGGAGAAAGAAAAGAAAAGAAAGGGAACGTGGTGGAGCTTCTTCTTGTATTGAGCTCTAGCTTTTTGTTTCCGTTGTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTCCTTCTCTTATCCTTTTTGCCCCTTAACTTCTGGGGT-TCTTT-TTGGCTGA----C-TGGGTGTTTATAGGCAGCAGATCTCTGGTGAGCACGGCCTTGATGGCTCCGGTGTGTGAGTACGACCTTTTTTT---------------------TTTTCTCTTTTTGGCGGTTTTGTCTTTACGTTATATTACATATCTGGATTGGGAATTCTGGGTCGATCGATCGAA-CAACGTCTAACCGGG-CGA-TA-TAGCTACCATGGCACTTCGGATCTTCAATTGGAGCGTTTGAACGTTTACTTCAACGAGGTTCGTACC-CTGTCGTGGATTCCCTTTATACGTGGTAAAGGGCACAAAATTTCTAACCTAG---TTGTTTTCGAAA-AATAGGCCAGTGGTCAGAAGTATGTTCCTCGTGCTGTCCTGGTCGACCTTGAGCCTGGTACCATGGATGCCGTCCGTGCCGGTCCGTTCGGTGAACTTTTCCGTCCCGACAACTTCGTTTT-GGCC------------------------------------------------- Chrysosporium_xerophilum_CBS153.67 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGTCTAACGAGAACGA-TACTAGTTACCATGGCACTTCGGACCTTCAACTGGAGCGTTTGAACGTTTACTTCAACGAGGTTTGTACAACTGCAGCAAATTCTCCTTTGATGTTGT--------CGAGGCTTCGAAAATAT---CTGACTCGTCCA-AACAGGCCAGTGGTCAGAAATATGTCCCCCGTGCCGTCCTGGTCGACCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTGAACTTTTCCGCCCCGACAACTTCGTTT------------------------------------------------------- Eurotium_amstelodami_CBS518.65 -------------GGTGCTGCTTTCTGGTATGTTTTTAAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGGA--GATGGATTGGGAGATATACTAACAGTATCACAGGCAGACTATCTCCGGCGAGCACGGTCTCGACGGCTCTGGTGTGTAAGTACAGTCGGGTCTCCGA------------------------------------GATGG--ACGCGT-------ATCGGATAT-----------------------------GGATATCTAACG-GA-----TTTCAGCTACAACGGATCCTCCGACCTCCAGTTGGAGCGTATGAACGTCTACTTCAACGAGGTTTG-CCTA------TCCGTTCGTGTT--------TGTGTGGAAACAGCT--------------CTGACAGT-----GATAGGCCTCCAACAACAAATATGTCCCCCGTGCCGTCCTCGTCGACCTTGAGCCAGGTACCATGGATGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCCGGTGCCGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGTA- Eurotium_herbariorum_CBS516.65 TGGTAACCAAATCGGTGCTGCTTTCTGGTATGTC-TACA-ATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGGAGGGTCGGATTAAGTGATATACTAACAGTATCATAGGCAGACTATCTCCGGCGAGCACGGTCTCGACGGCTCTGGTGTGTAAGTACCATCGGGTCTTCGG------------------------------------GATGG--ACGCGT-------ATCGGATAT-----------------------------GGATATCTAATG-GA-----CTGCAGCTACAATGGCTCCTCTGACCTCCAGTTGGAGCGGATGAACGTCTACTTCAACGAGGTTTGTACA-------TTCATTTGTGTT--------TGTGTGGAAACAAGT--------------CTGACAGT-----GACAGGCCTCCAACAACAAATATGTCCCCCGTGCCGTCCTCGTCGACCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGTCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCACTA------------ Monascus_argentinensis_CBS109402 ------------CGGTGCTGCTTTCTGGTATGTTGTTCG----------------------------------------ATGATTG-ATATTGAGAACGTG-------AGAACGCGCGGGCTCC-------TCGGATGAACGGCT-----------------------------------------------------------------------CTGTTGCTTCACGTCGGCGGGGGA-TT-TTTGTTGA----CTCG-TCTTTTATAGGCAGAACATCTCTGGTGAACACGGCCTTGATGGCGCTGGTGTGTAAGTGGGATCTTCTCGAA---------------------------------TCTCTGTTTGCAAGAGATATACGCAATCGGAGAAAAATAAATA----GGAAAGGAGGGACAT-CCATGTCTGATGAGA-----TGATAGTTACCATGGCACTTCCGATCTCCAGTTGGAGCGCATCAATGTTTACTTCAATGAGGTTAGTCCTATGGC--TGAGTTGCTGCTC------TTGAATCAAAAGAAGGTT------------CTGATGGTTT-GAAATAGGCCAGTGGACAGAAGTATGTTCCTCGCGCCGTCCTGGTCGACCTTGAGCCCGGTACCATGGATGCCGTCCGCGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCGTGTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCAC-------------- Monascus_floridanus_ATCC64205 ------------CGGTGCTGCTTTCTGGTATGTTGTTCA----------------------------------------GTAGATG-AAATTGAGAACGCGAGCGCGCGGGGTCCTCGAGAGGATTTGTTTCCTGCATGAGACTCCGTTGACCACGTGTTTTTCT---------------------------------------------------------------------GAGGGAGTT-TTTGTTGA----C-TGGTCTTATATAGGCAAAACATCTCTGGTGAACACGGCCTTGATGGCTCCGGTGTGTAAGTAGGACCTT-TTC-----------------------------------GTGTCTCCGTTTGGAA-------------GAAGTCGGAAGAGGAGATGG--GAGAGGGACAT-CCATGTCTGATGAGG-----TGATAGTTACCATGGCACTTCCGACCTTCAGTTGGAGCGCATCAACGTTTACTTCAACGAGGTTAGTCCCATGGC--TGGGTTTCTGGTT-------T--------TGGAGTTTGACAAGTTT---CTAATGGTTTGG-AATAGGCCAGTGGACAGAAGTATGTTCCTCGCGCCGTCCTGGTCGACCTTGAGCCTGGTACCATGGATGCCGTCCGCGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCGTGTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCAC-------------- Monascus_kaoliang_CBS302.78 ------------CGGTGCTGCTTTCTGGTATGTTATTCA----------------------------------------GGC-----GATTGA-----ACGATATGGAAGAACGCGTAGACCCCATTCCTGGTGGATGAGGTTCCAGCTGTT-CTTTTGTTTT-------------------------------------------------------------------CTGGGTCCGAGTT-TTTGCTGA----CTTGTTCTTTTATAGGCAGAACATCTCTGGTGAGCACGGCCTTGATGGCTCCGGTGTGTAAGTAGAAACCT-TTT-----------------------------------CCATCTATCTCAAGGC---------ATTGTACAGGGTGTGAGG----GGAA-A-AGGGGCAT-CAATGTCTAATGTGA-----TAACAGCTACCATGGTACTTCCGACCTTCAGTTGGAGCGTATCAACGTTTACTTCAACGAGGTTCGTCCTGTGG---TGGATTCCTATT-----------------CCAAGTAGAGCACCTTT---CTGATAATTTCG-ATTAGGCCAGTGGTCAGAAGTACGTTCCTCGTGCCGTCCTGGTCGACCTCGAGCCCGGTACCATGGATGCCGTCCGTGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCATCTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCACTA------------ Monascus_lunisporas_CBS113675 --------------GTGCTGCTTTCTGGTATGTTGTTCA----------------------------------------ATAATTG-ATATTCAGAACGTG-------GGAACGCGCGGGGTCCC--TCGGAAGGATGTGTTTTCTTGCATGAGGCT----------------------------------------------------------CTTGTCGATCCACGTTCGGGGAGAATTCGATTATTGA----TTAG---TTTTATAGGCAGAACATCTCTGGTGAACACGGCCTTGACGGCGCTGGTGTGTAAGTCTATTCTTTGCGAA---------------------------------CCTCG--------------------AGATAATTGGGAATAGA--------------GGACATCCAATGTCTAATGAGA-----CGATAGTTACCATGGAACTTCCGACCTTCAGTTGGAGCGCATCAACGTCTACTTCAATGAGGTTAGTCATACGGC--T-ACTTTCTAAGC------TTGAAG---AAGAAGT--------------CTGATAGTTTGAAAATAGGCCAGTGGACAGAAGTATGTTCCTCGCGCCGTCCTGGTCGACCTTGAGCCTGGTACTATGGATGCCGTCCGCGCTGGTCCCTTTGGTGAACTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCACT------------- Monascus_pallens_IMI356820 --------AAATCGGTGCTGCTTTCTGGTATGTCGTTCA----------------------------------------ATGGATG-ATATTGAGATCGCG-----CAGAACCTCGGAAGGATTCAGTTTTCTGGATGAGGCTTCGGTGATT-CGCGTGTGTTT-----------------------------------------------------------------------GTTCGGTT-TTTGTTGA----CTTTATTCTCTATAGGCAGAACATCTCTAGTGAACACGGCCTTGATGGCTCCGGTGTGTAAGTGGAACCTTCTCC-----------------------------------GTGTCTCTGTTTTGTGATGATATTCAGAGCCGGAGGAAGAAAC----GGAAAAGAAGGGCAT-CAACGTCTGATAAAA-----CTATAGTTACCATGGGACTTCTGACCTCCAGCTGGAGCGTATCAACGTTTACTTCAATGAGGTGTGTCCTATGGC--TAGATTTCTATTCTTTTTTTT--------TGAAGCTCGACAAGTTT---CTGACAGCTTGG-AGTAGGCCAGTGGACAGAAGTATGTCCCACGCGCCGTCCTGGTCGACCTCGAGCCTGGTACCATGGATGCCGTCCGTGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCGTGTTCGGCCAGTCCGGTGCTGGTAACAACTGGGC------------------------ Monascus_paxii_1_FRR2193 ------------CGGTGCTGCTTTCTGGTATGTTATTCA----------------------------------------GGCTATTGAAT---------GAATATGGAAGAACGCGTAGACCCCATTCCTGGTGGATGAGGTTCCAGCTGTT-CTTTCGTGTTTT-----------------------------------------------------------------CTGGGGTCGAGTT-TTTGCTGA----CTTGTTCTTTTATAGGCAGAACATCTCTGGTGAGCACGGCCTTGATGGCTCCGGTGTGTAAGTAGAACCCT-TTT-----------------------------------CCATCTATCTCAAGGC---------ATTGTGCAGGGTGTGAGG----GG--GAAAGGGGCAT-CAATGTCTAATGTGA-----TAACAGCTACCATGGTACTTCCGACCTTCAGTTGGAGCGTATCAACGTTTACTTCAACGAGGTTCGTCCTGTGA---TGGATTCCTATT-----------------CCATGTAGAGCGCCTTT---CTGATAATTTCG-ATTAGGCCAGTGGTCAGAAGTACGTTCCTCGTGCCGTCCTGGTCGACCTCGAGCCCGGTACCATGGATGCCGTCCGTGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGTA- Monascus_pilosus_FRR2194 TGGTAACCAAATCGGTGCTGCTTTCTGGTATGTTATTCA----------------------------------------GGCTATTGAAT---------GAATATGGAAGAACGCGTAGACCCCATTCCTGGTGGATGAGGTTCCAGCTGTT-CTTTCGTGTTTT-----------------------------------------------------------------CTGGGGTCGAGTT-TTTGCTGA----CTTGTTCTTTTATAGGCAGAACATCTCTGGTGAGCACGGCCTTGATGGCTCCGGTGTGTAAGTAGAACCCT-TTT-----------------------------------CCATCTATCTCAAGGC---------ATTGTGCAGGGTGTGAGG----GG--GAAAGGGGCAT-CAATGTCTAATGTGA-----TAACAGCTACCATGGTACTTCCGACCTTCAGTTGGAGCGTATCAACGTTTACTTCAACGAGGTTCGTCCTGTGA---TGGATTCCTATT-----------------CCATGTAGAGCGCCTTT---CTGATAATTTCG-ATTAGGCCAGTGGTCAGAAGTACGTTCCTCGTGCCGTCCTGGTCGACCTCGAGCCCGGTACCATGGATGCCGTCCGTGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGTA- Monascus_purpureus_FRR1596 TGGTAACCAAATCGGTGCTGCTTTCTGGTATGTTATTCA----------------------------------------GGCGATTGAAC---------G-ATATGGAAGAACGCGTAGACCCCATTCCTGGTGGATGAGGTTCCAGCTGTT-CTTT--TGTTTT-----------------------------------------------------------------CTGGGTCCGAGTT-TTTGCTGA----CTTGTTCTTTTATAGGCAGAACATCTCTGGTGAGCACGGCCTTGATGGCTCCGGTGTGTAAGTAGAAACCT-TTT-----------------------------------CCATCTATCTCAAGGC---------ATTGTACAGGGTGTGAGG----GG--AAAAGGGGCAT-CAATGTCTAATGTGA-----TAACAGCTACCATGGTACTTCCGACCTTCAGTTGGAGCGTATCAACGTTTACTTCAACGAGGTTCGTCCTGTGG---TGGATTCCTATT-----------------CCAAGTAGAGCACCTTT---CTGATAATTTCG-ATTAGGCCAGTGGTCAGAAGTACGTTCCTCGTGCCGTCCTGGTCGACCTCGAGCCCGGTACCATGGATGCCGTCCGTGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGTA- Monascus_ruber_FRR2447 TGGTAACCAAATCGGTGCTGCTTTCTGGTATGTTATTCA----------------------------------------GGCTATTGAAT---------GAATATGGAAGAACGCGTAGACCCCATTCCTGGTGGATGAGGTTCCAGCTGTT-CTTTCGTGTTTT-----------------------------------------------------------------CTGGGGTCGAGTT-TTTGCTGA----CTTGTTCTTTTATAGGCAGAACATCTCTGGTGAGCACGGCCTTGATGGCTCCGGTGTGTAAGTAGAACCCT-TTT-----------------------------------CCATCTATCTCAAGGC---------ATTGTGCAGGGTGTGAGG----GG--GAAAGGGGCAT-CAATGTCTAATGTGA-----TAACAGCTACCATGGTACTTCCGACCTTCAGTTGGAGCGTATCAACGTTTACTTCAACGAGGTTCGTCCTGTGA---TGGATTCCTATT-----------------CCATGTAGAGCGCCTTT---CTGATAATTTCG-ATTAGGCCAGTGGTCAGAAGTACGTTCCTCGTGCCGTCCTGGTCGACCTCGAGCCCGGTACCATGGATGCCGTCCGTGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGTA- Monascus_sanguineus_IMI356821 ---------------------------------------------------------------------------------------------------TGATATGGAAGAACGCGTAGACCCCATTCCTGGTGGATGAGGTTCCAGCTGTT-CTTTTGTTTT-------------------------------------------------------------------CTGGGGTC-AGTT-TTTGCTGA----CTTGCTCTTTTATAGGCAGAACATCTCTGGTGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTAGAAACCT-TTT-----------------------------------CCATCTATCTCAAGGC---------ATTGTACAGAGTGTGAGG----GA---AAAGGGGCAT-CAATGTCTAATGCGA-----TAACAGCTACCATGGTACTTCCGACCTTCAGTTGGAGCGTATCAACGTTTACTTCAACGAGGTTCGTCCTGTGA---TGGATTCTTATT-----------------CCAAGTAGAGCGCCTTTCTGCTGATAATTTCG-ATTAGGCCAGTGGTCAGAAGTACGTTCCTCGTGCCGTCCTGGTCGACCTCGAGCCCGGTACCATGGATGCCGTCCGTGCTGGTCCCTTCGGTGAACTTTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCCGGTGCTGGTAACAACTGGGCCAAGGGTCACTA------------ Xeromyces_bisporus_FRR0525 ---------------TGCTGCTTTCTGGTATGTTCATGA----------------------------------------ACGACTGAGCTATACAAAAGATACAGGGACAAGACGGGTATAGCTTCGTTAGCAATTCTAAACGATGCAACTAGTTTTGTTCCTATTCTCTGTCTGTTTTTGG----------------------------------------------------------CTTGTTGGCTGA----C-TGTGTAC--ATAGGCAGCAGATCTCTGGTGAACACGGCCTTGATGGCTCCGGTCTGTAAGTGCGACGTCTTATCTGAACCCAATTCTCCCCGTTTTGCGGCGGCGATATGCAAATATGCAAATTGAGGAGGAAAGGACAATTGGATAACGGGATAATTCAAATCGGCGAC-CAATGTCTAACGGGGTGACG---TAGTTACCAGGGAACTTCGGACCTCCAGCAGGAGCGTTTGAACGTTTACTTCAACGAGGTTTGTACAGCAATGCAACTCTCCGGTCCAAGACGGACTGAAATATCTAA---------------CTGCTTCTTTTA-AACAGGCCCATGGACAAAAGTATGTTCCTCGTGCCGTCCTGGTCGACCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCTTTCGGTGAACTTTTCCGTCCCGACAACTTCGTTTTCGGCCAGTCTGGTGCCGGTAACAACTGGGCCAAGGGTCACTA------------ ; END; [ The following blocks are output data for analysis step 7372 ] BEGIN TREES; TITLE Beta_tubulin_MrBayes; LINK TAXA = TaxaForAnalysisStep7372; TREE Betatubulin_majrule_50_con = [&R] (Eurotium_herbariorum_CBS516.65:0.04495547726562962,Eurotium_amstelodami_CBS518.65:0.04516755914247161,((((Monascus_floridanus_ATCC64205:0.01794931947005409,Monascus_argentinensis_CBS109402:0.02576015633342332,Monascus_lunisporas_CBS113675:0.06856247578303191):0.02152069512676948,Monascus_pallens_IMI356820:0.07339813400996519):0.04392700946187821,((Monascus_kaoliang_CBS302.78:0.006115377978180813,Monascus_purpureus_FRR1596:0.002722268632868799,Monascus_sanguineus_IMI356821:0.009572664692347143):0.005783629449772353,Monascus_paxii_1_FRR2193:0.002842633001928396,Monascus_pilosus_FRR2194:0.002976020608032113,Monascus_ruber_FRR2447:0.002846142321304393):0.03222204085740522):0.03594571022746935,((Xeromyces_bisporus_FRR0525:0.08619072466738684,Chrysosporium_inops_CBS297.95:0.06999554167748184):0.02832799854012512,Chrysosporium_xerophilum_CBS153.67:0.0480257986545641):0.08138223135097304):0.2274794468109556); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr46100] END;