#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 12, 2025; 11:11 GMT TreeBASE (cc) 1994-2008 Study reference: Tsutsumi C., Matsumoto S., Yatabe Y., Hirayama Y., & Kato M. 2011. A New Allotetraploid Species of Osmunda (Osmundaceae). Systematic Botany, 36: 836--844. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11582] [ The following blocks are input data for analysis step 7439 ] BEGIN TAXA; TITLE TaxaForAnalysisStep7439; DIMENSIONS NTAX=19; TAXLABELS Osmunda_claytoniana Osmunda_hybrida_H245A Osmunda_hybrida_H245B Osmunda_hybrida_H245C Osmunda_hybrida_H245D Osmunda_hybrida_H245E Osmunda_japonica_J1J6J7_J8 Osmunda_japonica_J2_J3_J4_J5 Osmunda_lancea_L1 Osmunda_lancea_L2_L3 Osmunda_regalis_R1_R2_R3_R4 Osmunda_regalis_R10 Osmunda_regalis_R11_R12 Osmunda_regalis_R13 Osmunda_regalis_R14_R15_R16_R17_R18 Osmunda_regalis_R5 Osmunda_regalis_R6 Osmunda_regalis_R7 Osmunda_regalis_R8_R9 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M9059] TITLE Osmunda_L245; LINK TAXA = TaxaForAnalysisStep7439; DIMENSIONS NCHAR=303; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Osmunda_claytoniana CATTCCTGCCAAGCTTTGCAAGCGTGAGAACACAAAGCAGTTCCACGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTGTGTTCAGGTTCTTTGTGGCTCAAGACAGTTATCCCTAATATCTATTTTCTGGAGATCATCAGAGTGCCTTTTGATTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTGTTCGTACACTTACGCGCCTAGCCTTGGACGACTGCCCAAT Osmunda_hybrida_H245A CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTCGTCGCTCAAGACAGTTATCCCTAATATCTGTTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCCCAAT Osmunda_hybrida_H245B CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTCGTCGCTCAAGACAGTTATCCTTACTATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTTTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCCCAAT Osmunda_hybrida_H245C CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTTGTCACTCAAGACAGTTATCCCTAATATCTATTTTCTGGAGATCATCAGAGTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTCGTACACTTGCGCTCCTAGCCTTGGACGAATGCCCAAT Osmunda_hybrida_H245D CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTTATGTTTGTTCAGGTTCTTCGTCGCTCAAGACAGTTATCCCTAATATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCCCAAT Osmunda_hybrida_H245E CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTTGTCACTCAAGACAGTTATCCCTAATATCTATTTTCTGGAGATCATCAGAGTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACGAATGCCCAAT Osmunda_japonica_J1J6J7_J8 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTTGTCACTCAAGACAGTTATCCCTAATATCTATTTTCTGGAGATCATCAGAGTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAGGGGCTGGTCTTTTCGTACACTTGCGCTCCTAGCCTTGGACGAATGCCAAAT Osmunda_japonica_J2_J3_J4_J5 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTTGTCACTCAAGACAGTTATCCCTAATATCTATTTTCTGGAGATCATCAGAGTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTCGTACACTTGCGCTCCTAGCCTTGGACGAATGCCCAAT Osmunda_lancea_L1 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTTGTCACTCAAGACAGTTATCCCTAATATCTATTTTCTGGAGATCATCAGAGTGCCTATTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTCGTACACTTGCGCTCCTAGCCTTGGAAGAATGCCCAAT Osmunda_lancea_L2_L3 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTTGTCACTCAAGACAGTTATCCCTAATATCTATTTTCTGGAGATCATCAGAGTGCCTATTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTCGTACACTTGCGCTCCTAGCCTTGGATGAATGCCCAAT Osmunda_regalis_R1_R2_R3_R4 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTCGTCGCTCAAGACAGTTATCCCTAATATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCCCAAT Osmunda_regalis_R10 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTTGTCGCTCAAGACAGTTATCCCTAATATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCCCAAT Osmunda_regalis_R11_R12 CATTCCTGCTAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTCGTCGCTCAAGACAGTTATCCCTAATATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCCCAAT Osmunda_regalis_R13 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTT{CT}GTTCAGGTTCTTTGTCGCTCAAGACAGTTATCCCTAATATATATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCCCAAT Osmunda_regalis_R14_R15_R16_R17_R18 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTTGTCGCTCAAGACAGTTATCCCTAATATATATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCCCAAT Osmunda_regalis_R5 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTCGTCGCTCAAGACAGTTATCCCTAATATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCACTCCTAGCCTTGGACAAATGCCCAAT Osmunda_regalis_R6 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTT????GGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTCGTCGCTCAAGACAGT?????CTAATATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCACTCCTAGCCTTGGACAAATGCCCAAT Osmunda_regalis_R7 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCCTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTCGTCGCTCAAGACAGTTATCCCTAATATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCACTCCTAGCCTTGGACAAATGCCCAAT Osmunda_regalis_R8_R9 CATTCCTGCCAAGCTTTGCAAGCGTGAAAACACAAAGCAGTTCCATGACTCAAAGATCAAGTTCCCCTTGATATTTCGCAAGATCCGTCCTCCTACAAGGAAGCTGAAAACAACTTACAAGGCCAGCAGGCCAAACACCTTTGTGTAGCTGATGTTTGTTCAGGTTCTTCGTGGCTCAAGACAGTTATCCCTAATATCTATTTTCTCGAGATCATCAGATTGCCTTTTGTTTTTGTACAAGGTCTCTGGCAAGGGCTGGTCTTTTTGTACACTTGCGCTCCTAGCCTTGGACAAATGCTCAAT ; END; BEGIN CODONS; CODONPOSSET * UNTITLED (CHARACTERS = Osmunda_L245) = N: 1-303; CODONPOSSET CodonPositions (CHARACTERS = Osmunda_L245) = N: 1-303; END; [ The following blocks are output data for analysis step 7439 ] BEGIN TREES; TITLE Osmunda_L245; LINK TAXA = TaxaForAnalysisStep7439; TREE PAUP_1 = [&R] (Osmunda_claytoniana:0.017991,((Osmunda_japonica_J1J6J7_J8:0.009812999999999999,(Osmunda_lancea_L1:0.003331,Osmunda_lancea_L2_L3:0.0):0.009814,(Osmunda_hybrida_H245C:0.0,Osmunda_japonica_J2_J3_J4_J5:0.0):0.006262,Osmunda_hybrida_H245E:0.009212):0.003131,(Osmunda_regalis_R10:0.0,(Osmunda_regalis_R13:0.0,Osmunda_regalis_R14_R15_R16_R17_R18:0.0):0.003333,(Osmunda_regalis_R8_R9:0.013318,Osmunda_hybrida_H245B:0.013383,Osmunda_hybrida_H245D:0.006642,Osmunda_regalis_R11_R12:0.006626,Osmunda_regalis_R1_R2_R3_R4:0.003313,Osmunda_hybrida_H245A:0.006621999999999999,(Osmunda_regalis_R6:0.003314,Osmunda_regalis_R7:0.008285,Osmunda_regalis_R5:0.001657):0.0049700000000000005):0.005283):0.005283):0.017991); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr46291] END;