#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 12, 2024; 20:53 GMT TreeBASE (cc) 1994-2008 Study reference: Yamaguchi K., Tsurumi Y., Suzuki R., Chuaseeharonnachai C., Sri-indrasutdhi V.-., Boonyuen N.-., Okane I., Suzuki K., & Nakagiri A. 2012. Trichoderma matsushimae and T. aeroaquaticum: two aero-aquatic species with Pseudaegerita-like propagules. Mycologia, 104(5): 1109-1120. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11768] [ The following blocks are input data for analysis step 7680 ] BEGIN TAXA; TITLE TaxaForAnalysisStep7680; DIMENSIONS NTAX=18; TAXLABELS Hypocrea_flaviconidia_GJS_99_49_EU883557 Hypocrea_neorufa_GJS_96_132_HQ260621 Hypocrea_pezizoides_GJS_01_231_isth750 Trichoderma_asperelloides_GJS_04_116_GU248411 Trichoderma_asperellum_GJS_90_7_EU338337 Trichoderma_atroviride_CBS_142_95_EU341801 Trichoderma_evansii_CBS_123079_EU883558 Trichoderma_hamatum_DAOM_167057_isth764 Trichoderma_koningii_CBS_119500_FJ860541 Trichoderma_lieckfeldtiae_CBS_123050_EU883561 Trichoderma_paucisporum_GJS_01_13_FJ150787 Trichoderma_pubescens_DAOM_166162_isth760 Trichoderma_sp._NBRC_108031 Trichoderma_sp._NBRC_108034 Trichoderma_sp._NBRC_108035 Trichoderma_sp._NBRC_108036 Trichoderma_theobromicola_DIS_85f_FJ007374 Trichoderma_yunnanense_CBS_121219_GU198274 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M9930] TITLE 'Fig33-RPB2'; LINK TAXA = TaxaForAnalysisStep7680; DIMENSIONS NCHAR=804; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Hypocrea_flaviconidia_GJS_99_49_EU883557 TGGGGTGACCAGAAGAAGGCCATGAGCTCGACTGCAGGCGTATCACAGGTGCTTAACCGTTACACTTTTGCTTCGACACTTTCTCATCTGCGTCGTACAAACACACCCATCGGAAGAGATGGTAAGCTGGCAAAGCCTCGACAGCTACACAACACACACTGGGGTTTGGTGTGCCCGGCCGAGACCCCTGAAGGACAAGCTTGTGGTCTGGTCAAAAACTTGTCTCTGATGTGCTACGTCAGTGTCGGATCTCCTTCTGAGCCCTTGATCGAGTTTATGATCAACAGAGGTATGGAGGTCGTTGAGGAGTATGAACCGCTGAGAAATCCCCATGCGACAAAGATCTTTGTGAATGGAGTTTGGGTTGGAATCCACCAAGACCCCAAGCATCTTGTGAACCAAGTTTTGGATACTCGTCGCAAATCCTATCTGCAATACGAAGTCTCTCTGATCAGAGACATTCGTGACCAAGAATTCAAAATCTTCTCTGACGCCGGCCGTGTTATGCGTCCCGTCTTTACTGTACAACAAGAAGATGACCCGGAAACGGGTATCAACAAGGGCCACTTGGTTTTGACCAAGGACCTTGTCAACAGACTGGCTAAAGAGCAGGCTGAGCCTCCAGAAGACCCAAGCATGAAGCTTGGATGGGAGGGGTTAATTAGGGCTGGTGCGGTGGAATATCTCGATGCCGAGGAAGAAGAAACGGCCATGATTTGCATGACACCGGAGGATCTTGAATTTTATCGTCTTCAGAAAGCTGGCATATCCACAGATGAAGACATGGGAGACGATCCAAACAAG Hypocrea_neorufa_GJS_96_132_HQ260621 TGGGGTGATCAGAAGAAGGCAATGAGCTCGACCGCAGGTGTATCGCAGGTGCTTAACCGTTACACTTTTGCTTCAACACTATCCCATTTGCGTCGTACCAATACCCCCATCGGAAGAGATGGTAAGCTGGCGAAGCCTCGACAGCTTCACAACACACACTGGGGTTTGGTATGCCCGGCCGAGACACCTGAAGGACAGGCTTGTGGCCTGGTCAAAAACTTGTCCCTGATGTGCTACGTCAGTGTCGGATCTCCTTCTGAGCCTTTGATCGAGTTTATGATCAACAGAGGCATGGAGGTCGTTGAAGAGTACGAACCACTGAGGTATCCCCATGCTACAAAGATCTTTGTGAATGGTGTCTGGGTTGGAATCCATCAAGATCCCAAGCATTTGGTAAACCAAGTTTTGGACACTCGTCGTAAATCTTATCTGCAGTACGAAGTCTCTCTGATCAGAGACATTCGTGACCAAGAATTCAAAATCTTCTCTGACGCCGGTCGTGTAATGCGTCCTGTCTTTACTGTACAGCAAGAAGATGACCCGGAAACGGGTATCAACAAGGGCCACTTGGTTTTGACCAAGGATCTCGTCAATAGATTGGCCAAGGAGCAGGCTGAGCCCCCAGAAGACCCAAGCATGAAGCTTGGATGGGAAGGGTTAATTAGGGCTGGTGCGGTGGAATATCTCGATGCTGAGGAAGAAGAAACGTCTATGATCTGCATGACGCCGGAGGATCTTGAACTCTATCGTCTTCAGAAAGCTGGCATTGCCACAGATGAAGACATAGGAGACGATCCAAACAAG Hypocrea_pezizoides_GJS_01_231_isth750 TGGGGCGATCAGAAAAAGGCAATGAGCTCGACTGCAGGTGTATCGCAGGTGCTCAATCGTTACACTTTTGCTTCGACACTTTCTCATTTGCGCCGCACCAACACGCCCATCGGAAGAGATGGTAAGCTGGCGAAGCCTCGACAGCTTCACAACACACACTGGGGATTGGTGTGCCCGGCCGAGACGCCTGAAGGACAAGCTTGTGGTCTGGTCAAAAACTTGTCGCTGATGTGCTACGTCAGTGTCGGGTCTCCTTCCGAGCCGTTGATCGAATTTATGATCAACAGAGGTATGGAAGTTGTCGAGGAATACGAACCGCTGAGGTATCCCCATGCGACAAAGATCTTTGTGAATGGAGTCTGGGTTGGCATCCACCAGGACCCCAAGCATCTGGTGAACCAGGTTCTGGATACTCGTCGTAAATCCTATCTGCAGTACGAAGTCTCGTTGATCAGAGAAATCCGTGATCAAGAATTCAAAATTTTCTCTGACGCCGGTCGCGTCATGCGTCCTGTCTTTACCGTACAGCAGGAAGATGACCCGGATTTGGGCACCAGCAAAGGTCACCTGGTTTTAACCAAGGAGCTCGTCAATAGACTGGCCAAAGAGCAGGCCGAGCCTCCGGAAGACCCAAGCATGAAGCTTGGGTGGGAGGGGTTGATCAGGGCCGGTGCGGTAGAATATCTGGATGCCGAAGAAGAGGAAACGTCCATGATTTGCATGACACCGGAGGATCTTGAGTTTTATCGTCTTCAGAAAGCTGGTATTTCCCAAGATGAAGACATGGGAGACGATCCAAACAAG Trichoderma_asperelloides_GJS_04_116_GU248411 TGGGGTGACCAGAAGAAGGCAATGAGCTCGACCGCAGGTGTATCACAGGTGCTTAACCGTTACACTTTTGCTTCGACACTTTCTCATTTGCGTCGTACCAATACACCCATCGGAAGAGATGGTAAGCTGGCGAAGCCTCGACAGCTTCACAACACACACTGGGGTTTGGTATGCCCGGCCGAGACCCCTGAAGGACAGGCTTGTGGTTTGGTCAAAAACTTGTCTCTGATGTGCTACGTCAGTGTCGGATCTCCTTCCGAGCCTTTGATCGAGTTTATGATCAACAGAGGTATGGAGGTCGTTGAGGAATACGAACCGCTGAGGTATCCCCATGCGACAAAGATCTTTGTGAATGGTGTCTGGGTTGGAATCCACCAAGACCCCAAGCATCTGGTAAACCAAGTTTTGGACACTCGTCGCAAATCCTATCTGCAATACGAAGTCTCTCTGATCAGAGATATTCGTGACCAAGAATTCAAAATCTTCTCTGACGCCGGTCGTGTTATGCGTCCTGTCTTTACTGTACAGCAAGAGGATGACCCGGAAACGGGCATCAACAAGGGCCACCTGGTTTTAACCAAGGATCTTGTCAACAGACTGGCTAAAGAGCAGGCTGAGCCTCCGGAAGACCCAAGCATGAAGCTTGGATGGGAAGGGTTAATTCGGGCTGGCGCGGTGGAATATCTCGATGCCGAGGAAGAAGAAACGGCTATGATTTGCATGACACCGGAGGATCTTGAGCTCTACCGTCTTCAGAAGGCTGGCATTTCCACAGATGAAGACATGGGAGACGATCCAAACAAG Trichoderma_asperellum_GJS_90_7_EU338337 TGGGGTGACCAGAAGAAGGCAATGAGCTCGACCGCAGGTGTATCACAGGTGCTTAACCGTTACACTTTTGCTTCGACACTTTCTCATTTGCGTCGTACCAATACACCCATCGGAAGAGATGGTAAGCTGGCGAAGCCTCGACAGCTTCACAACACACACTGGGGTTTGGTATGCCCGGCCGAGACCCCTGAGGGACAGGCTTGTGGTTTGGTCAAAAACTTGTCTCTGATGTGCTACGTCAGTGTCGGATCTCCTTCCGAGCCTTTGATCGAGTTTATGATCAACAGAGGTATGGAGGTCGTTGAGGAATACGAACCGCTGAGGTATCCCCATGCGACAAAGATTTTTGTGAATGGTGTCTGGGTTGGAATCCACCAAGACCCCAAGCATCTGGTAAACCAAGTTTTGGACACTCGTCGTAAATCCTATCTGCAATACGAAGTCTCTCTGATCAGAGATATTCGTGACCAAGAATTCAAAATCTTCTCTGACGCCGGTCGTGTTATGCGTCCTGTCTTTACTGTACAGCAAGAGGATGACCCGGAAACGGGCATCAACAAGGGCCACCTGGTTTTAACCAAGGATCTTGTCAATAGACTGGCCAAAGAGCAGGCTGAGCCTCCGGAAGACCCAAGCATGAAGCTTGGATGGGAAGGGTTAATTCGGGCTGGTGCGGTGGAATATCTCGATGCTGAGGAAGAAGAAACGGCTATGATTTGCATGACACCGGAGGATCTCGAGCTTTACCGTCTTCAGAAGGCTGGCATTGCCACAGATGAAGACATGGGAGACGATCCAAACAAG Trichoderma_atroviride_CBS_142_95_EU341801 TGGGGTGACCAGAAGAAGGCAATGAGCTCGACCGCAGGTGTCTCACAGGTGCTTAACCGTTACACTTTTGCTTCTACACTTTCCCATTTGCGTCGTACCAATACACCCATCGGAAGAGATGGTAAGCTGGCGAAGCCTCGACAGCTCCACAACACACACTGGGGTTTGGTGTGCCCGGCTGAGACCCCTGAAGGTCAAGCTTGTGGTCTGGTCAAGAATTTGTCTCTCATGTGCTACGTCAGTGTTGGATCTCCTTCTGAGCCTTTGATCGAGTTTATGATCAACAGAGGTATGGAAGTCGTTGAGGAGTATGAGCCACTGAGGTATCCCCATGCTACAAAGATCTTTGTGAATGGTGTCTGGGTTGGAATCCACCAAGACCCCAAGCATCTGGTAAACCAAGTTTTGGATACTCGTCGCAAATCCTATCTGCAGTACGAGGTCTCTCTGATCAGAGAAATTCGAGACCAAGAATTCAAAATCTTCTCTGACGCCGGCCGTGTCATGCGTCCCGTCTTCACTGTACAGCAGGAAGATGACCCGGAAACGGGTATCAACAAGGGCCACCTGGTTTTGACCAAGGACCTTGTCAATAGACTGGCCAAAGAGCAGGCTGAGCCTCCAGAAGACCCAAGCATGAAGCTCGGATGGGAAGGGCTGATTAGAGCTGGTGCGGTGGAATATCTCGACGCCGAGGAAGAAGAAACGTCCATGATTTGCATGACACCGGAGGATCTGGAGCTCTATCGTCTTCAAAAGGCCGGCATTGCCACGGATGAAGACATAGGAGACGATCCAAATAAG Trichoderma_evansii_CBS_123079_EU883558 TGGGGTGACCAGAAGAAGGCTATGAGCTCGACTGCAGGTGTATCACAGGTGCTTAACCGTTACACTTTTGCTTCGACACTTTCTCATTTGCGTCGTACAAACACACCCATCGGAAGAGATGGTAAGCTGGCGAAGCCTCGACAGCTTCACAACACACACTGGGGTTTGGTGTGCCCGGCCGAGACCCCTGAAGGACAAGCTTGTGGTCTGGTCAAAAACTTGTCTCTGATGTGCTACGTCAGTGTCGGATCTCCTTCTGAGCCTTTGATCGAGTTTATGATCAATCGAGGTATGGAGGTCGTTGAAGAGTATGAACCGCTGAGATATCCCCATGCGACAAAGATCTTTGTGAATGGAGTCTGGGTTGGAATCCACCAAGACCCCAAGCATCTGGTAAACCAAGTTTTGGATACTCGTCGTAAATCCTATCTGCAATACGAAGTCTCTCTGATCAGAGACATTCGTGACCAAGAATTCAAAATCTTCTCTGACGCCGGTCGTGTTATGCGTCCTGTCTTTACTGTACAGCAAGAAGATGATCCGGAAACGGGTATCAACAAGGGCCACTTGGTCTTGACCAAGGACCTTGTCAACAGACTGGCTAAAGAGCAGGCTGAGCCTCCAGAAGACCCAAGCATGAAGCTTGGTTGGGAGGGGTTAATTAGGGCTGGTGCGGTGGAATATCTCGATGCCGAGGAAGAAGAAACGGCCATGATTTGCATGACACCGGAGGATCTTGAACTTTATCGTCTTCAGAAAGCTGGTATCTCCACGGATGAAGACATGGGAGACGATCCAAACAAG Trichoderma_hamatum_DAOM_167057_isth764 TGGGGTGACCAGAAGAAGGCAATGAGCTCGACTGCAGGTGTATCACAGGTGCTTAACCGTTACACTTTTGCCTCGACACTTTCTCATTTGCGTCGTACCAACACACCCATTGGAAGAGATGGTAAGCTGGCGAAGCCTCGACAGCTTCACAACACACATTGGGGTTTGGTGTGCCCAGCCGAGACCCCCGAAGGACAAGCTTGTGGTCTGGTCAAAAACTTGTCTCTGATGTGCTACGTCAGTGTCGGATCTCCTTCTGAGCCTTTGATCGAGTTTATGATCAATAGGGGTATGGAGGTTGTTGAGGAGTACGAACCACTGAGGTATCCCCATGCTACAAAGATCTTTGTGAATGGTGTCTGGGTTGGAATCCACCAAGACCCCAAGCATCTGGTAAACCAAGTTTTGGACACTCGTCGTAAATCCTATCTGCAGTACGAAGTCTCTCTGATCAGAGATATTCGTGACCAAGAATTCAAAATCTTCTCTGACGCCGGTCGTGTTATGCGTCCTGTCTTTACTGTACAGCAAGAAGATGACCCGGAAACGGGTATCAACAAGGGCCACTTGGTATTGACCAAGGACCTCGTCAACAGACTTGCCAAAGAGCAGGCTGAGCCTCCAGAAGACCCAAGCATGAAGCTTGGATGGGAGGGGTTAATTAGGGCTGGTGCGGTGGAATATCTCGACGCCGAGGAAGAAGAAACGGCTATGATTTGCATGACACCGGAGGATCTTGAACTTTATCGTCTTCAGAAGGCTGGTATTTCCACGGATGAAGACATGGGAGACGATCCAAACAAG Trichoderma_koningii_CBS_119500_FJ860541 TGGGGTGACCAGAAGAAGGCAATGAGCTCGACCGCAGGTGTATCACAGGTGCTTAACCGCTACACTTTTGCTTCTACACTATCTCATTTGCGTCGTACCAATACACCCATCGGAAGAGATGGTAAGCTGGCGAAGCCTCGACAGCTCCACAACACACATTGGGGCTTGGTGTGCCCGGCTGAGACCCCTGAGGGACAGGCTTGTGGTCTGGTCAAGAACTTGTCTCTGATGTGCTACGTCAGCGTTGGATCTCCTTCTGAGCCTCTGATCGAGTTTATGATCAACAGAGGCATGGAAGTCGTTGAGGAGTACGAGCCACTGAGATATCCTCATGCTACAAAGATCTTTGTGAACGGTGTCTGGGTTGGAATCCACCAAGACCCTAAGCATCTGGTAAACCAAGTTTTGGATACTCGTCGCAAATCCTATCTGCAGTACGAAGTCTCTCTGATCAGAGAAATTCGAGACCAAGAATTCAAAATCTTCTCTGATGCTGGTCGTGTTATGCGTCCCGTCTTCACTGTACAGCAGGAAGATGACCCGGAAACGGGTATCAACAAGGGCCACTTGGTTTTGACCAAGGAACTGGTCAATAGATTGGCAAAGGAGCAGGCTGAGCCTCCGGAAGACCCAAGCATGAAGATTGGATGGGAAGGGTTAATCAGGGCTGGTGCGGTGGAATATCTCGACGCCGAGGAAGAAGAAACGTCTATGATTTGCATGACCCCGGAAGATCTTGAGCTTTATCGTCTTCAGAAGGCCGGTATTTCCACGGAGGAAGACATGGGAGATGATCCAAACAAG Trichoderma_lieckfeldtiae_CBS_123050_EU883561 TGGGGTGACCAGAAGAAGGCTATGAGCTCGACCGCAGGTGTATCTCAGGTGCTTAACCGTTACACTTTTGCTTCGACACTATCTCATTTGCGTCGTACCAATACACCCATTGGAAGAGATGGTAAGCTGGCGAAGCCTCGACAGCTTCACAACACACACTGGGGCTTAGTGTGCCCGGCCGAGACCCCTGAAGGACAGGCTTGTGGTCTGGTCAAAAACTTGTCTCTGATGTGCTACGTCAGTGTCGGATCTCCCTCCGAGCCTTTGATTGAGTTTATGATCAACAGAGGCATGGAGGTCGTTGAGGAGTACGAACCGCTGAGGTATCCCCACGCGACAAAGATCTTTGTGAATGGTGTCTGGGTTGGAATCCACCAAGACCCCAAGCATCTGGTAAACCAAGTTTTGGATACTCGTCGTAAATCCTATCTGCAGTACGAAGTCTCCCTGATCAGAGACATTCGTGATCAAGAATTCAAAATCTTCTCTGACGCCGGTCGTGTTATGCGTCCTGTCTTTACTGTACAGCAAGAAGATGACCCGGAAACAGGCATCAACAAGGGCCACCTGGTTTTGACCAAGGATCTTGTCAATAGATTGGCCAAAGAGCAGGCCGAGCCTCCGGAAGATCCAAGCATGAAGCTTGGATGGGAGGGGTTAATTAGGGCTGGTGCGGTGGAATATCTCGATGCTGAGGAAGAAGAAACGGCTATGATTTGCATGACACCGGAGGATCTTGAGCTTTACCGTCTCCAGAAGGCTGGCATTTCCACAGATGAAGACATGGGAGACGATCCAAACAAG Trichoderma_paucisporum_GJS_01_13_FJ150787 TGGGGTGACCAGAAGAAGGCAATGAGCTCGACCGCAGGTGTATCACAGGTGCTTAACCGTTACACTTTTGCTTCAACACTTTCTCATTTGCGTCGTACCAACACACCCATCGGAAGAGATGGTAAGCTGGCAAAGCCTCGACAGCTTCACAATACACACTGGGGTTTGGTGTGCCCGGCCGAGACGCCTGAAGGACAAGCTTGTGGTCTGGTCAAAAACTTGTCTCTGATGTGCTACGTCAGTGTCGGATCTCCTTCTGAGCCCTTGATCGAGTTCATGATCAACAGAGGTATGGAGGTCGTTGAAGAGTACGAACCGCTGAGATATCCCCATGCGACAAAGATCTTTGTGAATGGTGTCTGGGTTGGAATCCATCAAGACCCCAAACATCTGGTGAACCAAGTTTTGGACACTCGTCGTAAATCCTATCTGCAGTACGAAGTCTCTCTGATCAGGGATATTCGTGACCAAGAGTTCAAGATCTTCTCTGACGCCGGTCGTGTTATGCGTCCTGTCTTTACCGTACAGCAAGAAGATGACCCGGAAACGGGCATCAACAAGGGCCACCTGGTTTTGACCAAGGATCTCGTCAATAGACTGGCCAAAGAGCAGGCTGAGCCTCCGGAAGACCCAAGCATGAAGCTTGGATGGGAGGGGTTAATTAGGGCTGGTGCGGTGGAATATCTCGATGCCGAGGAAGAAGAAACGGCTATGATTTGCATGACACCGGAGGACCTTGAGCTTTATCGTCTTCAGAAAGCTGGTATTTCCACAGATGAAGACATGGGAGACGATCCAAACAAG Trichoderma_pubescens_DAOM_166162_isth760 TGGGGTGACCAGAAGAAGGCTATGAGCTCGACTGCAGGTGTATCACAGGTGCTTAACCGTTACACTTTTGCTTCGACGCTTTCTCATTTGCGTCGTACAAACACACCCATCGGAAGAGATGGTAAGCTGGCGAAGCCTCGACAGCTTCACAACACACACTGGGGTTTGGTGTGCCCGGCCGAGACTCCTGAAGGACAAGCTTGTGGTCTGGTCAAAAATTTGTCTCTGATGTGCTACGTTAGTGTCGGATCTCCTTCTGAGCCCTTGATCGAGTTTATGATCAACAGAGGTATGGAAGTCGTTGAGGAGTACGAACCACTGAGGTATCCCCATGCCACAAAGATCTTTGTGAATGGTGTCTGGGTTGGTATCCACCAAGACCCCAAGCATCTGGTAAACCAAGTTTTGGACACTCGTCGTAAATCCTATCTGCAGTACGAAGTCTCTCTGATCAGAGACATTCGTGACCAAGAATTCAAAATCTTCTCTGACGCCGGTCGTGTTATGCGTCCTGTCTTTACTGTACAGCAAGAAGATGACCCGGAAACGGGTATCAACAAGGGCCACTTGGTTTTGACCAAGGATCTCGTCAACAGACTGGCTAAAGAGCAGGCTGAGCCTCCAGAAGACCCAAGCATGAAGCTTGGATGGGAGGGGCTAATTAGGGCTGGTGCGGTGGAATATCTCGATGCCGAGGAAGAAGAAACGTCTATGATTTGCATGACACCGGAGGATCTTGAACTTTACCGTCTTCAAAAAGCTGGTATTTCCACGGATGAAGACATGGGAGACGATCCAAACAAG Trichoderma_sp._NBRC_108031 TGGGGTGACCAGAAAAAGGCAATGAGCTCGACCGCAGGTGTATCACAGGTGCTTAACCGCTACACTTTTGCTTCGACACTTTCTCATTTGCGTCGTACCAACACACCCATCGGAAGAGATGGTAAGCTGGCGAAGCCTCGACAACTCCACAACACACACTGGGGTTTGGTGTGCCCGGCCGAGACGCCTGAAGGACAAGCTTGTGGTCTGGTCAAGAACTTGTCTCTGATGTGCTACGTTAGTGTGGGATCTCCTTCTGAGCCTTTGATCGAGTTTATGATCAATAGAGGTATGGAGGTCGTTGAAGAGTACGAACCGCTGAGGTATCCCCATGCGACAAAGATTTTTGTGAATGGTGTCTGGGTTGGAATCCACCAAGACCCCAAGCATCTGGTGAACCAAGTTTTGGACACCCGTCGTAAATCCTATCTGCAGTACGAAGTCTCTCTGATCAGAGAGATTCGTGACCAAGAATTCAAAATCTTTTCTGACGCCGGTCGCGTGATGCGTCCTGTCTTTACTGTACAGCAAGAAGATGACCCAGAAACGGGCATTAACAAGGGCCACCTGGTTTTGACCAAGGATCTCGTCAATAGACTGGCCAAAGAGCAGGCCGAGCCTCCGGAAGACCCAAGCATGAAATTTGGATGGGAGGGGTTAATTAGGGCTGGTGCGGTGGAATATCTCGATGCTGAGGAAGAAGAAACGTCCATGATTTGCATGACACCGGAGGATCTTGAATTTTATCGTCTTCAGAAGGCTGGTATTTCTACCGAGGAAGACATGGGAGACGATCCAAACAAG Trichoderma_sp._NBRC_108034 TGGGGTGACCAGAAAAAGGCAATGAGCTCGACCGCAGGTGTATCACAGGTGCTTAACCGCTACACTTTTGCTTCGACACTTTCTCATTTGCGTCGTACCAACACACCCATCGGAAGAGATGGTAAGCTGGCGAAGCCTCGACAACTCCACAACACACACTGGGGTTTGGTGTGCCCGGCCGAGACGCCTGAAGGACAAGCTTGTGGTCTGGTCAAGAACTTGTCTCTGATGTGCTACGTTAGTGTGGGATCTCCTTCTGAGCCTTTGATCGAGTTTATGATCAATAGAGGTATGGAGGTCGTTGAAGAGTACGAACCGCTGAGGTATCCCCATGCGACAAAGATTTTTGTGAATGGTGTCTGGGTTGGAATCCACCAAGACCCCAAGCATCTGGTGAACCAAGTTTTGGACACCCGTCGTAAATCCTATCTGCAGTACGAAGTCTCTCTGATCAGAGAGATTCGTGACCAAGAATTCAAAATCTTTTCTGACGCCGGTCGCGTGATGCGTCCTGTCTTTACTGTACAGCAAGAAGATGACCCAGAAACGGGCATTAACAAGGGCCACCTGGTTTTGACCAAGGATCTCGTCAATAGACTGGCCAAAGAGCAGGCCGAGCCTCCGGAAGACCCAAGCATGAAATTTGGATGGGAGGGGTTAATCAGGGCTGGTGCGGTGGAATATCTCGATGCTGAGGAAGAAGAAACGTCCATGATTTGCATGACACCGGAGGATCTTGAATTTTATCGTCTTCAGAAGGCTGGTATTTCTACCGAGGAAGACATGGGAGACGATCCAAACAAG Trichoderma_sp._NBRC_108035 TGGGGTGACCAGAAAAAGGCAATGAGCTCGACCGCAGGTGTATCACAGGTGCTTAACCGCTACACTTTTGCTTCGACACTTTCTCATTTGCGTCGTACCAACACACCCATCGGAAGAGATGGTAAGCTGGCGAAGCCTCGACAACTCCACAACACACACTGGGGTTTGGTGTGCCCGGCCGAGACGCCTGAAGGACAAGCTTGTGGTCTGGTCAAGAACTTGTCTCTGATGTGCTACGTTAGTGTGGGATCTCCTTCTGAGCCTTTGATCGAGTTTATGATCAATAGAGGTATGGAGGTCGTTGAAGAGTACGAACCGCTGAGGTATCCCCATGCGACAAAGATTTTTGTGAATGGTGTCTGGGTTGGAATCCACCAAGACCCCAAGCATCTGGTGAACCAAGTTTTGGACACCCGTCGTAAATCCTATCTGCAGTACGAAGTCTCTCTGATCAGAGAGATTCGTGACCAAGAATTCAAAATCTTTTCTGACGCCGGTCGCGTGATGCGTCCTGTCTTTACTGTACAGCAAGAAGATGACCCAGAAACGGGCATTAACAAGGGCCACCTGGTTTTGACCAAGGATCTCGTCAATAGACTGGCCAAAGAGCAGGCCGAGCCTCCGGAAGACCCAAGCATGAAATTTGGATGGGAGGGGTTAATCAGGGCTGGTGCGGTGGAATATCTCGATGCTGAGGAAGAAGAAACGTCCATGATTTGCATGACACCGGAGGATCTTGAATTTTATCGTCTTCAGAAGGCTGGTATTTCTACCGAGGAAGACATGGGAGACGATCCAAACAAG Trichoderma_sp._NBRC_108036 TGGGGTGACCAGAAAAAGGCAATGAGCTCGACCGCAGGTGTATCACAGGTGCTTAACCGCTACACTTTTGCTTCGACACTTTCTCATTTGCGTCGTACCAACACACCCATCGGAAGAGATGGTAAGCTGGCGAAGCCTCGACAACTCCACAACACACACTGGGGTTTGGTGTGCCCGGCCGAGACGCCTGAAGGACAAGCTTGTGGTCTGGTCAAGAACTTGTCTCTGATGTGCTACGTTAGTGTGGGATCTCCTTCTGAGCCTTTGATCGAGTTTATGATCAATAGAGGTATGGAGGTCGTTGAAGAGTACGAACCGCTGAGGTATCCCCATGCGACAAAGATTTTTGTGAATGGTGTCTGGGTTGGAATCCACCAAGACCCCAAGCATCTGGTGAACCAAGTTTTGGACACCCGTCGTAAATCCTATCTGCAGTACGAAGTCTCTCTGATCAGAGAGATTCGTGACCAAGAATTCAAAATCTTTTCTGACGCCGGTCGCGTGATGCGTCCTGTCTTTACTGTACAGCAAGAAGATGACCCAGAAACGGGCATTAACAAGGGCCACCTGGTTTTGACCAAGGATCTCGTCAATAGACTGGCCAAAGAGCAGGCCGAGCCTCCGGAAGACCCAAGCATGAAATTTGGATGGGAGGGGTTAATCAGGGCTGGTGCGGTGGAATATCTCGATGCTGAGGAAGAAGAAACGTCCATGATTTGCATGACACCGGAGGATCTTGAATTTTATCGTCTTCAGAAGGCTGGTATTTCTACCGAGGAAGACATGGGAGACGATCCAAACAAG Trichoderma_theobromicola_DIS_85f_FJ007374 TGGGGTGACCAGAAAAAGGCAATGAGCTCGACCGCAGGTGTATCACAGGTGCTTAACCGTTACACTTTTGCTTCGACACTTTCACATTTGCGTCGTACCAACACACCCATCGGAAGAGATGGTAAGCTGGCGAAGCCTCGACAGCTTCACAATACACACTGGGGTTTGGTGTGCCCGGCCGAGACGCCTGAAGGACAAGCTTGTGGTCTGGTCAAAAACTTGTCTCTAATGTGCTACGTCAGTGTCGGATCTCCTTCTGAGCCTTTGATCGAGTTTATGATCAACAGAGGTATGGAGGTCGTTGAAGAGTACGAACCACTGAGATATCCCCATGCGACAAAGATCTTTGTGAATGGTGTCTGGGTTGGAATCCACCAAGACCCCAAGCATCTGGTGAACCAAGTCCTGGATACTCGTCGTAAATCCTATCTGCAGTACGAAGTCTCTCTGATCAGAGATATTCGTGACCAAGAATTCAAAATCTTCTCTGACGCCGGTCGTGTTATGCGTCCTGTCTTTACCGTACAGCAAGAAGATGACCCGGAAACGGGCATCAACAAGGGCCACCTGGTTTTGACCAAGGATCTCGTCAATAGACTGGCCAAAGAGCAGGCTGAGCCTCCGGAAGACCCAAGCATGAAGCTTGGATGGGAGGGGTTAATTAGGGCTGGTGCGGTGGAATATCTTGATGCCGAGGAAGAAGAAACGGCTATGATTTGCATGACACCGGAGGATCTTGAGCTTTATCGTCTTCAGAAGGCTGGTATTTCCACGGATGAAGACATGGGAGACGATCCAAACAAG Trichoderma_yunnanense_CBS_121219_GU198274 TGGGGTGACCAGAAGAAGGCAATGAGCTCGACCGCAGGTGTATCACAGGTGCTTAACCGTTACACTTTTGCTTCGACACTTTCTCATTTGCGTCGTACCAATACACCCATCGGAAGAGATGGTAAGCTGGCGAAGCCTCGACAGCTTCACAACACACACTGGGGTTTGGTATGCCCGGCCGAGACCCCTGAGGGACAGGCTTGTGGTTTGGTCAAAAACTTGTCTCTGATGTGCTACGTCAGTGTCGGATCTCCTTCCGAGCCTTTGATCGAATTTATGATCAACAGAGGTATGGAGGTCGTTGAGGAGTACGAACCGCTGAGGTATCCCCATGCGACAAAGATCTTTGTGAATGGTGTCTGGGTTGGAATCCATCAAGACCCCAAGCATCTGGTAAACCAAGTTTTGGACACTCGTCGTAAATCCTATCTGCAGTACGAAGTCTCTCTGATCAGAGATATTCGTGACCAAGAATTCAAAATCTTCTCTGACGCCGGTCGTGTTATGCGTCCTGTCTTTACTGTACAGCAAGAGGATGACCCAGAAACGGGCATCAACAAGGGCCACCTGGTTTTAACCAAGGATCTTGTCAATAGACTGGCCAAAGAGCAGGCTGAGCCTCCGGAAGACCCAAGCATGAAGCTTGGATGGGAAGGGTTAATTCGAGCTGGTGCGGTGGAATATCTCGATGCCGAGGAAGAAGAAACGGCTATGATTTGCATGACACCGGAGGATCTTGAGCTTTACCGTCTTCAGAAGGCTGGCATTGCCACAGATGAAGACATGGGAGACGATCCAAACAAG ; END; [ The following blocks are output data for analysis step 7680 ] BEGIN TREES; TITLE Fig33_RPB2t; LINK TAXA = TaxaForAnalysisStep7680; TREE Fig._33_RPB2 = [&R] ((Trichoderma_koningii_CBS_119500_FJ860541:0.040835,Trichoderma_atroviride_CBS_142_95_EU341801:0.032994):0.0125175,(Hypocrea_neorufa_GJS_96_132_HQ260621:0.042836,((Trichoderma_lieckfeldtiae_CBS_123050_EU883561:0.028084,(Trichoderma_asperelloides_GJS_04_116_GU248411:0.007293,(Trichoderma_asperellum_GJS_90_7_EU338337:0.004651,Trichoderma_yunnanense_CBS_121219_GU198274:0.006856):0.002523):0.009584):0.004312,((Trichoderma_hamatum_DAOM_167057_isth764:0.017892,(Trichoderma_pubescens_DAOM_166162_isth760:0.017567,(Trichoderma_evansii_CBS_123079_EU883558:0.008655,Hypocrea_flaviconidia_GJS_99_49_EU883557:0.024496):0.011551):0.006479):0.009155,((Trichoderma_paucisporum_GJS_01_13_FJ150787:0.016007,Trichoderma_theobromicola_DIS_85f_FJ007374:0.010542):0.003559,(Hypocrea_pezizoides_GJS_01_231_isth750:0.089539,(Trichoderma_sp._NBRC_108031:0.0,(Trichoderma_sp._NBRC_108034:0.0,(Trichoderma_sp._NBRC_108035:0.0,Trichoderma_sp._NBRC_108036:0.0):0.0):0.001254):0.032616):0.005416):0.005334):0.00551):0.007096):0.0125175); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr47744] END;