#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 13, 2024; 13:31 GMT TreeBASE (cc) 1994-2008 Study reference: Hoffman G.E., Sanchez puerta M.V., & Delwiche C. 2011. Phylogenetic analysis of algal light-harvesting complex proteins and its implications for functional inference. BMC Evolutionary Biology, 11: 101. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10542] [ The following blocks are input data for analysis step 7725 ] BEGIN TAXA; TITLE TaxaForAnalysisStep7725; DIMENSIONS NTAX=246; TAXLABELS Alexandrium_tamarense_CF751882 Alexandrium_tamarense_CK431764 Alexandrium_tamarense_CK431807 Alexandrium_tamarense_CK432998 Alexandrium_tamarense_CK433577 Alexandrium_tamarense_CK782611 Alexandrium_tamarense_CK785040 Alexandrium_tamarense_CK785886 Alexandrium_tamarense_CK786246 Alexandrium_tamarense_CV554475 Amphidinium_carterae_CF064709 Amphidinium_carterae_CF064920 Amphidinium_carterae_CF065118 Amphidinium_carterae_CF065877 Amphidinium_carterae_CF066031_CF067312 Amphidinium_carterae_CF066762 Amphidinium_carterae_LhcA_AJ009670 Amphidinium_carterae_LhcB_AJ009670 Amphidinium_carterae_LhcD_AJ009670 Amphidinium_carterae_Z47563 Bigelowiella_natans_AY267688 Bigelowiella_natans_AY267689 Chlamydomonas_eugametos_L1818_X60721 Chlamydomonas_reinhardtii_104720 Chlamydomonas_reinhardtii_184724 Chondrus_crispus_CO649812 Chondrus_crispus_CO652368_CO651192 Chondrus_crispus_CO652608_CO652286 Chondrus_crispus_CO653137 Cyanidioschyzon_merolae_CMN235C Cyclotella_cryptica_Fcp_1_AJ000670 Cyclotella_cryptica_Fcp_12_AJ005839 Cyclotella_cryptica_Fcp_2_AJ000545 Cyclotella_cryptica_Fcp_3_AJ000965 Cyclotella_cryptica_Fcp_4_AJ005838 Cyclotella_cryptica_Fcp_5_AJ000967 Cyclotella_cryptica_Fcp_6_AJ000968 Cyclotella_cryptica_Fcp_7_AJ000969 Cylindrotheca_fusiformis_CffcpA1A_DQ060240 Cylindrotheca_fusiformis_CffcpB3_AY125590 Cylindrotheca_fusiformis_CffcpC_AY125594 Emiliania_huxleyi_AY289120 Emiliania_huxleyi_CX771537 Emiliania_huxleyi_CX772211 Emiliania_huxleyi_CX772333 Emiliania_huxleyi_CX772408 Emiliania_huxleyi_CX774563 Emiliania_huxleyi_CX774638 Emiliania_huxleyi_CX774681 Emiliania_huxleyi_CX775010 Emiliania_huxleyi_CX775827 Emiliania_huxleyi_CX776411 Emiliania_huxleyi_CX777192 Emiliania_huxleyi_CX777336 Emiliania_huxleyi_CX778736 Emiliania_huxleyi_CX779067 Emiliania_huxleyi_DQ658248 Emiliania_huxleyi_EG030880 Emiliania_huxleyi_EG030976 Emiliania_huxleyi_EG033467 Emiliania_huxleyi_EG357771 Emiliania_huxleyi_EG357835 Emiliania_huxleyi_EG357978 Galdieria_sulphuraria_Lhc3_AJ308253 Galdieria_sulphuraria_Lhcr2_AJ277213 Galdieria_sulphuraria_Lhcr4_AJ277285 Galdieria_sulphuraria_lhc1_AJ012759 Galdieria_sulphuraria_lhcr5_AJ276862 Giraudyopsis_stellifer_Z46920 Griffithsia_japonica_AY124024 Griffithsia_japonica_Gj446_AF517869 Griffithsia_japonica_Gj513_AF517881 Guillardia_theta_EG720035 Guillardia_theta_EG72369_EG719821 Guillardia_theta_LHCC10_AF268323 Guillardia_theta_LHCC13_AF268324 Guillardia_theta_LHCC4_AF268322 Guillardia_theta_Lhc3_AJ821803 Guillardia_theta_Lhc4_AJ821808 Guillardia_theta_Lhc7_AJ821820 Guillardia_theta_Lhc7_AJ821831 Guillardia_theta_lhc1_AJ821801 Heterocapsa_triquetra_A_AY826911 Heterocapsa_triquetra_AY826901 Heterocapsa_triquetra_AY826902 Heterocapsa_triquetra_AY826903 Heterocapsa_triquetra_AY826905 Heterocapsa_triquetra_AY826913 Heterocapsa_triquetra_DT382892 Heterosigma_carterae_Fcp1_X99697 Isochrysis_galbana_DQ118573 Isochrysis_galbana_DQ118574 Isochrysis_galbana_DQ118577 Isochrysis_galbana_DQ118578 Isochrysis_galbana_DQ118579 Isochrysis_galbana_DQ118580 Isochrysis_galbana_DQ118581 Isochrysis_galbana_DQ118582 Isochrysis_galbana_DQ118583 Isochrysis_galbana_DQ118584 Isochrysis_galbana_DQ118585 Isochrysis_galbana_DQ118586 Isochrysis_galbana_DQ118587 Isochrysis_galbana_IGFcp1_X77333 Isochrysis_galbana_ISL00000009 Isochrysis_galbana_ISL00000011 Isochrysis_galbana_ISL00000222 Isochrysis_galbana_ISL00000652 Isochrysis_galbana_ISL00000731 Isochrysis_galbana_ISL00001344 Isochrysis_galbana_ISL00001475 Isochrysis_galbana_ISL00001514 Isochrysis_galbana_ISL00004541 Karenia_brevis_CO063314 Karenia_brevis_CO064441_CO061242 Karenia_brevis_CO064464 Karenia_brevis_CO065025 Karlodinium_micrum_DQ118610 Karlodinium_micrum_DQ118611 Karlodinium_micrum_DQ118614 Karlodinium_micrum_DQ118615 Karlodinium_micrum_DQ118616 Karlodinium_micrum_DQ118621 Karlodinium_micrum_DQ118623 Laminaria_digitata_AW401184_AW401128 Laminaria_digitata_CN467240_CN466737 Laminaria_japonica_Lhcf6_A_DQ250739 Laminaria_japonica_Lhcf6_B_DQ250739 Laminaria_saccharina_Lhcf2_AF226858 Laminaria_saccharina_Lhcf5_AF226861 Laminaria_saccharina_Lhcf6_AF226862 Lingulodinium_polyedrum_BP742312 Lingulodinium_polyedrum_BP743285 Lingulodinium_polyedrum_BP743367 Lingulodinium_polyedrum_BP743813 Lingulodinium_polyedrum_CD809390 Lingulodinium_polyedrum_CD809793 Lingulodinium_polyedrum_CD809920 Lingulodinium_polyedrum_CD809947 Macrocystis_pyrifera_Pfcpa_U10065 Macrocystis_pyrifera_Pfcpe_U10069 Mesostigma_viride_MVL00002413 Micromonas_sp._MSL00000056b Micromonas_sp._MSL00000740 Odontella_sinensis_FcpA_X81054 Odontella_sinensis_FcpB_X81055 Ostreococcus_lucimarinus_7949 Ostreococcus_tauri_6427 Pavlova_lutheri_PLL00000003 Pavlova_lutheri_PLL00000004 Pavlova_lutheri_PLL00000019 Pavlova_lutheri_PLL00000092 Pavlova_lutheri_PLL00000098 Pavlova_lutheri_PLL00000288 Pavlova_lutheri_PLL00000387 Pavlova_lutheri_PLL00000398 Pavlova_lutheri_PLL00000435 Pavlova_lutheri_PLL00000672 Pavlova_lutheri_PLL00001579 Pavlova_lutheri_PLL00003241 Phaeodactylum_tricornutum_10243 Phaeodactylum_tricornutum_11006 Phaeodactylum_tricornutum_14386 Phaeodactylum_tricornutum_16302 Phaeodactylum_tricornutum_16322 Phaeodactylum_tricornutum_16481 Phaeodactylum_tricornutum_17531 Phaeodactylum_tricornutum_17766 Phaeodactylum_tricornutum_22006 Phaeodactylum_tricornutum_23257 Phaeodactylum_tricornutum_25893 Phaeodactylum_tricornutum_30643 Phaeodactylum_tricornutum_34536 Phaeodactylum_tricornutum_48882 Phaeodactylum_tricornutum_6062 Phaeodactylum_tricornutum_9799 Phaeodactylum_tricornutum_AC151931 Phaeodactylum_tricornutum_Fcp2_X55156 Phaeodactylum_tricornutum_FcpA_Z24768 Phaeodactylum_tricornutum_FcpC_Z24768 Phaeodactylum_tricornutum_FcpF_Z23153 Pleurochrysis_carterae_AB240951 Porphyra_haitanensis_EG017003 Porphyra_yezoensis_AU190126_AU187195 Porphyra_yezoensis_AU193538 Porphyra_yezoensis_AV437049 Porphyra_yezoensis_AV437085_AV432551 Porphyra_yezoensis_AV438065 Porphyra_yezoensis_CX874214 Porphyridium_cruentum_LhcaR1_U58679 Porphyridium_cruentum_LhcaR2_U58680 Prymnesium_parvum_DV097448 Prymnesium_parvum_DV097686 Prymnesium_parvum_DV097739 Prymnesium_parvum_DV098263 Prymnesium_parvum_DV098344 Prymnesium_parvum_DV098387 Prymnesium_parvum_DV098428 Prymnesium_parvum_DV099034 Prymnesium_parvum_DV099196 Prymnesium_parvum_DV099689 Prymnesium_parvum_DV099977 Prymnesium_parvum_DV100100 Prymnesium_parvum_DV100168 Prymnesium_parvum_DV100215 Prymnesium_parvum_DV100460 Prymnesium_parvum_DV100745 Prymnesium_parvum_DV102503 Prymnesium_parvum_DV102563 Prymnesium_parvum_DV103421 Prymnesium_parvum_DV103534 Prymnesium_parvum_DV103536 Pyrocystis_lunula_AF508261 Pyrocystis_lunula_BQ253990 Rhodomonas_sp._CS24_Lhcc2_AJ308530 Rhodomonas_sp._CS24_Lhcc3_AJ308530 Rhodomonas_sp._CS24_Lhcc4_AJ308530 Skeletonema_costatum_ScfcpA_U66169 Skeletonema_costatum_ScfcpB_U66171 Skeletonema_costatum_ScfcpC_U66173 Skeletonema_costatum_ScfcpD_U66174 Skeletonema_costatum_ScfcpE_U66175 Skeletonema_costatum_ScfcpF_U66177 Thalassiosira_pseudonana_11501 Thalassiosira_pseudonana_12097 Thalassiosira_pseudonana_2601 Thalassiosira_pseudonana_268127 Thalassiosira_pseudonana_270092 Thalassiosira_pseudonana_29375 Thalassiosira_pseudonana_31128 Thalassiosira_pseudonana_31983 Thalassiosira_pseudonana_32723 Thalassiosira_pseudonana_33018 Thalassiosira_pseudonana_33606 Thalassiosira_pseudonana_34276 Thalassiosira_pseudonana_38122 Thalassiosira_pseudonana_38139 Thalassiosira_pseudonana_38494 Thalassiosira_pseudonana_38667 Thalassiosira_pseudonana_38879 Thalassiosira_pseudonana_39813 Thalassiosira_pseudonana_41655 Thalassiosira_pseudonana_42962 Thalassiosira_pseudonana_6139 Vaucheria_litorea_AF336982 Vaucheria_litorea_AF336985 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M10001] TITLE 'Light-Harvesting Complex Amino Acids'; LINK TAXA = TaxaForAnalysisStep7725; DIMENSIONS NCHAR=266; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . ] Alexandrium_tamarense_CF751882 -------------------------QCAFECELG--------------------------------VQCPVGFWDPVGFTADG-----------DAAAFRRRRVTELKHGRVCMLAAIGYIVP--ECY-RFPGYLCPCE-------------DLKFADMPHGLAAIC----KVPLPGIAQWVLFVGFVE----KDDPCRLPGDYE-------------S-TICDPEEKTRRLNCELANGRLAMTAIMALFFQNGTVG--------- Alexandrium_tamarense_CK431764 -------------------------LRDFCQELG--------------------------------ACPPLGFWDPLDLCNFD----------VAVCQFKRRRIIEIQHGRVCMLACIGFIVP---EYFKWPGYLCPCE-------------GIQFQDIPNGLGAAA----KVPLIGWAQIVAFVGTIE-----EPGEYAG---D-------------GGCIDDREKKEKCLLAEINNGRLAMMAIIGMFFQNGLTG--------- Alexandrium_tamarense_CK431807 --------------------------RAFEGELG--------------------------------VQAPL-F-DPAGLCADG-----------DVACFTRRRCVEIKHGRICMLATMGYITP--EVTGKFPGYLCPGC-------------GLKFADVPNGLAAIG----KVPLLGWLQIFGYAFFVE----------SD--VA-------------LLATDDPEKRKTKLAAELANGRLAMMAIIGMFFQDGLTG--------- Alexandrium_tamarense_CK432998 --------------------------FNPAEQPGAV--------------------------------PPLGFFDPLGFCKVG-----------DERGFWKLRCAEIKHGRVAMMACVGAVVQHF---VKLPGCENVKGT-------------FGALTTAEGVI------------GATGIFVLCAILE-----------------------------GVNMFDEE-MRNK---ELGNGRMAMLCVLGIWAAELATG--------- Alexandrium_tamarense_CK433577 -------------------------------------------------------------------------------ARGG-----------DVAVFKRRRETEIKHGRVCMLATMGYITP--ELTGKLPGYLCPCM-------------GLKFEDVPNGLAAIC----KVPAAGWAQIVAYGFFCE----------EN-----------------LLATDDAELKTKRLNAELANGRLAMMAIIGMFFQDGLTG--------- Alexandrium_tamarense_CK782611 ------------------------------------MCPCVPYLEYPEV-------------LD-GWVGGEKGFDPLNVTQ--------------ALPVYLVREAELKHGRVCMLATLG-WIATD--LG---------------VRFPG---EVFQNVCTVDAHNKMVEA-----GIMGPFLATVGVYE------VNREAGDFF--LGKNFLPKDE---------AQATTMKLKELENGRLAMLAFCG-ICTQA--VLTGKT---- Alexandrium_tamarense_CK785040 ----------------------------------------------G-------------TR-LEGYVGQEQDFDPLGFC--------------DTFDVRWLREAELKHGRVCMLATVG-FAAQQF---------------------VTLP--GV-TPTEDCLQAVYT----APAPLMAALLLFTGYVE------TDREPGDLN--FG-KRFLDGD-E-------EKCYDLKLKELNNGRLAMMAFGGMVHHNLVV-KGPLFPLF- Alexandrium_tamarense_CK785886 --------------------------FCKEQQLGAQ--------------------------------DPLGFWDPLDLCK-------------DEATFKDYRAKELKHGRAAMMGALGMLTQCV---VQVPGMEGVPKC-------------VNAIFVGNGMV------------GGLAVLALIGGLE-----------------------------WWDDYCDE-MRAR---ELNNGRIAMFAAIGQIAAGLYTG--------- Alexandrium_tamarense_CK786246 -----------------------------------------------------------------------QCRRP--------------------GGFRILRMAELKHGRVAMMACIGLVAQHF---LKLPGAECVPAG-------------IGALCTVAGQV------------GFVAIFAWCGVLE-----------------------------GLGMYDVE-MRNR---EINNGRFAMIAVTGILAAELATG--------- Alexandrium_tamarense_CV554475 --------------------------VVPKEQPGVT--------------------------------APLGFFDPAG-T-KG-----------DETGFKHLRAAEIKHGRVAMMAALGNVAAHY---WKLPGFEGVPTG-------------LATLGTEQGAK------------GFAALFCLVALKE-----------------------------NFGQYTPE-MRTK---ELNNGRMAMFAVMGQLVAEMATG--------- Amphidinium_carterae_CF064709 ------------------------------------------FAQGLVGCE--------------HAFG-RYEFDPIGFC-KYTEL------------VPWFREAELKHGRIAMLAWLG-LVVPDFVHP--------------RRGVLLRGRATCRRCT--CP-RRCRT----KLPDYPLHLHR-ALLR------SWRLQLDAL-------LPED---------EEAQKQMRIAEL-NGRL--L-ALG-A-TQA---ITG-PFP-- Amphidinium_carterae_CF064920 -------------------------NPAFENELG--------------------------------VQAPVGFWDPVGFTADG-----------NVACFRRRRTVELKHGRICMLAAMGYITP--EVTGKFPGYLCPGA-------------GLKFADVPNGLGALC----VVPAAGWAQIAAYMGAVD-------VLGGFNDYK-------------MLTCCDPAEKQVKLACELANGRLA----MVAILAMFFQN--------- Amphidinium_carterae_CF065118 ------------------------------------------FAGGLVGCEY-------------GGFGGRYEWDPAGLAERWPEH------------LAWYREAELKHGRVAMLAFAG-LLAPDLFR---------------LPWGEFCDPCLDFVNA----HDKFVC----GFGPMWWGFIACGGIE------TLERWQPWM--VRC--SQRI---------LKCAFCMRWRELKNGPLGYVGREP-FCLAGV--LLG-STT-- Amphidinium_carterae_CF065877 ----------------------------------------------------------------------------------------------------------------------WHHCA---RVVKFPGYLCPCE-------------GLKFADVPNGLGALA----KVPAEGWLQIGLFLGHYE-----DKDRCPG---D-------------PTPELCDADKEKKLCVEIANGRLAMVAIIGMFYQDGLTG--------- Amphidinium_carterae_CF066031_CF067312 ------------------------------------M-PCVPYLPYP-R-------------L--GWVGGEKGFDPLRTC---------------IIDVYWLREAELKHGRICMLATLG-WIC-D--A----------------WRFEA---EMFQGVCVINAHNKMVEM-----GVMQQMLCIVGVCE------IQRKAGDYF--IGKNFLPKEE---------DKAKDMQLKELENGRLAMLAFCG-ICTQA--NLFPEC---- Amphidinium_carterae_CF066762 --------------------------------------------------------------------------------TEDC----------TKADFDRRRAVELKHGRVCMFATLGMVWP--DIFGKFDGDLCPCLG-------------LKFCDIPCGLGAIT----AVPIAGWVQILFFAGLIE--------FGVCCCGA-------------GRKIKDPAERKQKLTTELNNGRLAMVAFTGMALQNLLTG--------- Amphidinium_carterae_LhcA_AJ009670 --------------------------MAFENERG--------------------------------VQDPVGFFDPLGFTADG-----------SVENFKRRRQTEIKHGRVAMWATMGYITP--EITGKLPGYLCPCT-------------GVKYDDIPNGLGAIC----KVPAAGWGQMIAYAAFCE---------SAG---T-------------VLTCCDPAELEKKLCAECANGRLAMMAIIGMFFQDGLTG--------- Amphidinium_carterae_LhcB_AJ009670 -------------------------LRAFECERG--------------------------------VQPPVGFFDPLGFTKDG-----------NVENFTRRRATEIKHGRIAMLATMGYITP--ELF-RFDGYLCRCA-------------GVKYVDIPNGLGAFC----KVPFVGWVQMVAYCLLVE---------SQG---A-------------VLTCCNPAEKEKKLRAELANGRLAMMAIIGMFFQDGLTG--------- Amphidinium_carterae_LhcD_AJ009670 ----------------------------CEHKTC--------------------------------VRPPVGFWDPLGCTKDG-----------DRAAFQRRRATEFKHGRIAMLATMGYITP--EIAGKFPGELC--S-------------ELKFTDVPTGLAALG----VVPFAGWLQIILYCYAVH----RCRLQEGR-AWQ-------------WLVGKDPTLRKKKLCVDLANGRLAMMAIIGMFFQDGLTG--------- Amphidinium_carterae_Z47563 -------------------------LRAFENELG--------------------------------VQAPTGFFDPLGLCCDG-----------SVDNFKRRRACEIKHGRVAMLATMGYMTP--EITAKFPGYLCYCQ-------------SCKFADVPNGLAAMC----KVPVLGWAQVAAYGAVCD----------AG---T--------------ITCEDEETLKRKLNCELANGRLAMMAIIGLFFQDGLTG--------- Bigelowiella_natans_AY267688 ---------------------------------------------------------AED-TLPG-TAPLGKFWDPAGFTKG-----------LCPNELKKYREAEITHGRVCMLGVLG-FLTQE---AFHPL-----------------FGGNIDGPAIKQFDEITRMA------FWYPVLLAIAVAE-F-SLRDEYEPGN-IG-FDPLNLKP-SNP-------TDLACIKNKELNNGRLAMLALAGFVAQELVNG--------- Bigelowiella_natans_AY267689 ---------------------------------------------------------QPYK-LPG-SAPMGDYFDPLGLCKGK-----------DECELKRFREAEITHCRVAMLAFLG-FLFQEALL-DRPLF-----------------LGGIKGPAIYHFQQVCERF----------TLPFFAYFE-FG-LKEDYTPGD-LG-FDPFQAYP-LDC-------NGKKAMQDKELNNGRLAMLGVAGLMAQELVDG--------- Chlamydomonas_eugametos_L1818_X60721 ----------------------------------------------------------A--TLPGCGVECGPVWDPLCLAAT-----------ATVGDVRRWRECEITHGRVAMLAALG-FVVGEQL-EDFPAFF---------------FDGHITGQAIKQFDQVQQG-------FWEPLLIAIGLAE-FNNLKDEYDLGN-LY-FDPLGLKP-EDP-------EELRELQTKELNNGRLAMIAIAGFVLQEVAEG--------- Chlamydomonas_reinhardtii_104720 -----------------------------------------------------------------------GVFDPAGFLAT-----------ACIKDVRRWRECEITHGRVAMLAALG-FVVGEQL-QDFPLFF---------------WDGRVCGPAIYHFQQIGQG-------FWEPLLIAIGVAE-FNCLKDDYEPGD-LG-FDPLGLKP-TDP-------EELKVMQTKELNNGRLAMIAIAAFVAQELVEQ--------- Chlamydomonas_reinhardtii_184724 ----------------------------------------------------------K--TLPGVTAPFDNVFDPAGFLAT-----------ACVKDVRRWRECEITHGRVAMLAALG-FIVGEQL-QDFPLFF---------------FDGRVCGPAIYHFQQIGQG-------FWEPLLIAIGVAE-FNCLKDDYEPGD-LG-FDPLGLKP-TDP-------EELKTLQTKELNNGRLAMIAIAAFVAQELVEQ--------- Chondrus_crispus_CO649812 -----------------------------------------PRAEFG-------------TNLCPDMPGYTG-FDPLGLCN--------------LFDVKFLQEAEIKHCRVCMLAVLG-MLVCEQ------------------VTLPFYT-DAPRLACD--IHAWAV-----NQGAMVQLLFWVCFFE-------PRKPGEFA--FDPLGLGKNP---------TAYARYQLCEIKNGRLAMIAIGGLIHQEWMT-GLTPI-QQ- Chondrus_crispus_CO652368_CO651192 ------------------------------------MCKCVPFLLKP-------------KNLEG-LPACFE-FDPLLICD--------------YINVRFLQAAEIKHGRICMLACLG-MLVQE--L----------------WTFPNC--YFPHILP-VEAHNYFI-----TTGGMCQILLFIAVFE-------KNE-GNFG--FDPLGL--GKD-------ATTFKKYQVNEIMNGRLAMIGIGGLIHQEWVT-KTGAIDQL- Chondrus_crispus_CO652608_CO652286 ------------------------------------ACRAIPFLEAP-------------SKLDGCRIG-DCGFDPLYLC--------------DYLDQDYAAAGELKNGRVAMLATVG---VQ---------------------EFVHLPNP--MFAEANPIKAIYA----VPVEGWVQILVAIAIIE-----------GDLG--FDPLGMGCKG----------NMEELKLKELKNGRLAMLACIGFIFQTITTGKPIIA-QL- Chondrus_crispus_CO653137 ------------------------------------RP-SMPFLPKP-------------PTLCEDMIG-YTGFDPLALC--------------QLMDVKWLQECEIKHGRICMLAFLG-MLVQEF---------------------VHLPN-AA-FCNPVATEALGQ----VPAIGLWQIFIFCGICE-------GAEPGKLG--FNPMNLKMT-------------DRIRLAEIKNGRLAMCGVGGVIHCMFIY-KTPIVAQL- Cyanidioschyzon_merolae_CMN235C ------------------------------------NCRCVPFAPVP-------------EVRECGLAGCEAEFDPLMITC--------------YLPICWMRECEVKHGRIAMLAFVG-TLAQQA------------------YQFPWYK-GAPTTLVG--AHDHFV-----TT-ALAQILLFTCAFE-------GRLPGYYG--FDPLGLWGKD--------EACRKRMELAEVKNGRLAMIAMLALWHQEVLCGGMGVI-EQ- Cyclotella_cryptica_Fcp_1_AJ000670 IAC----AAAFAPA--QTGKATTCLA-AFENELGAQ--------------------------------PPLGFFDPLGLL-DG----------ADQERFDRLRYVELKHGRICQLAFLGQITT--RAGFRLPGDICYDG--------------TKFCDIGEGW-A---GCLQVPVAGALQILAFVGFLE------EGEFVGDFR--------------------EETKLCKRAIELNNGRAAMMGILGLMVHEQLG---------- Cyclotella_cryptica_Fcp_12_AJ005839 -------------------------------------------------------ECAFAWGLPGCLD-PAPEFDPFGFAKN-----------TDLQTMKKWREAETQHGRVAMLAAVG-MLVTEEPIEYHPLF---------------EADNKDIGPAIRHLDEVRAVE------FLA-FAAFIGALEEFQQIEADYYPGD-VG-FDPLGLKP-KDC-------ADFAVMQTKELQNGRLAMLGAAGMIAQELQNG--------- Cyclotella_cryptica_Fcp_2_AJ000545 FACLIAGAAAFAPA--QTGKATTCLA-AFENELGAQ--------------------------------PPLGFFDPLGLL-DG----------ADQERFDRLRYVELKHGRICQLAFLGQITT--RAGFRLPGDICYDG--------------TKFCDIGEGW-A---GCLQVPVAGALQILAFVGFLE------EGEFVGDFR--------------------EETKLCKRAIELNNGRAAMMGILGLMVHEQLG---------- Cyclotella_cryptica_Fcp_3_AJ000965 FACLIAGAAAFAPV--QTGKATTCLA-AFENELGAQ--------------------------------PPLGFFDPLGLL-DG----------ADQERFDRLRYVELKHGRICQLAFLGQITT--RAGFRLPGDICYDG--------------TKFCDIGEGW-A---GCLQVPVAGALQILAFVGFLE------EGEFVGDFR--------------------EETKLCKRAIELNNGRAAMMGILGLMVHEQLG---------- Cyclotella_cryptica_Fcp_4_AJ005838 ---------------------------------------SIPFLTVP-------------EKLDGCMPG-DMGFDPMGLCD-------------IQTDLNYARWCELKHGRICMLAVVG-MVWQEYG--------------------PHLPG-DA-YATRDPWEAICC----VGFACNIQTLLAIGVVE------GT--PGDIG--WDGGQLKNMD-S-------AAVKKRMECEVVHCRLAMIAFIGATHQTFLLHK----GLL- Cyclotella_cryptica_Fcp_5_AJ000967 IACLIAGAAAFAPA--QTGKATTCLR-AFEDELGAQ--------------------------------PPLGFFDPFGMLCGD----------CTQERFDRLRYVEIKHGRIAQLAFLGQVVT--RAGIHLPGCINYAG--------------DCFDCFPNGV-AALFGPNCIPTAGLVQIICFIGVLE------TNEHVGDFR--------------------EETKLQKRAIELNNGRAAMMGILGLMVHEEII---------- Cyclotella_cryptica_Fcp_6_AJ000968 -------------------------------------------------------NAFCAADLPGA-LPPVGFFDPLGFAEK-----------ADEKTLKRYREAEVTHGRVAMLAVVG-FLVGEAVEGCCFLF-----------------DAQICGPAITHFTQVPDG-------WDALIVTFIGAAEQPGLLRDNYYPGD-IG-FDPLGLKP-EDP-------EELNIMITKELQNGRLAMLAAAGFLAQEAVDG--------- Cyclotella_cryptica_Fcp_7_AJ000969 -------------------------------------------------------NAFCAADLPGA-LPPVGFFDPLGFAEK-----------ADEKTLKRYREAEVTHGRVAMLAVIG-FLVGEAVEGCCFLF-----------------DAQICGPAITHFTQVPDG-------WDALIVTFIGAAEQPGLLRDNYYPGD-IG-FDPLGLKP-EDP-------EELNIMITKELQNGRLAMLAAAGFLAQEAVDG--------- Cylindrotheca_fusiformis_CffcpA1A_DQ060240 LACLVATAAAFAPA--KQACTCTALNNAFECELGAQ--------------------------------PPLGFFDPFGLLCGD----------ATEERFERLRYVEIKHGRICMLAFLGQITT--RAGIHLPGCINYAG--------------DCFDCYPNGV-AAVFGENHIPTAGIVQIICTIGILE------FAEFPGDFR--------------------EETKLQKRAIELNNGRAAMMGILGLMVHELII---------- Cylindrotheca_fusiformis_CffcpB3_AY125590 LACLVATAAVFAPA-KQAATTTCLN--SFENELGAQ--------------------------------PPLGFFDPLGLV-AD----------GDQEKFDRLRYVELKHGRICMLGVVGYLVT--AAGIRLPGDIDYCG--------------TAFCDITYGW-EGC---QQVPVAGALQVFAFVGFLE-------GEFPGDFR--------------------EETKLQKRAV-------------------------------- Cylindrotheca_fusiformis_CffcpC_AY125594 FAALIATAAAFAPA-KQAATTTCLN--SFECELGAQ--------------------------------DPLGFFDPLGLV-EN----------ADQAKFDRLRFVELKHGRICMLGVLGYLVT--AAGVRLPGDIDYAG--------------TKFADIGYGW-EGC---QQVPVAGALQIFAFCGFLE-------GEFIGDFR--------------------AETKLQKRAIELNNGRAAQMGMLGLMIHDKLGN--------- Emiliania_huxleyi_AY289120 ----------------------------------------------------------DLKTLATGLNPVVGYWDPLKLG------EAEFWDNTNEETIGWLRHAEIKHGRVAMAGFVG-FIVQANGIKFPWAPF------N-----AITCT--SPPEQWDQLPDAAK----------WQIILGVGFLE---------KPGYVPDLYDPLKWCNGACA-------EKKQKGLLTELNNGRLAMLGIMGFVCEAKVPG--------- Emiliania_huxleyi_CX771537 --------------------------FCPACDIGVT--------------------------------PPLGLFDPLNLLAR------------GPEVYRRCQELEIKHGRLAMAATLGVIVT--EAGIRLPGYLCICE-------------DIKFADQPGTLDGAY---FGTPLAGWVQIVAFIAALD----DPC-NDPGDVVQ---------------------TKAFKLNAERNNGRAAMFGIIGMICHTALGQ--------- Emiliania_huxleyi_CX772211 ----------------------------------------------------------LLTGGCPCQCQRELIMARMTLT-------------ERRAAVAKMREAEIRHARLAMLAAAGWPLCELLQG--------------------------------------------------------------GLGPAAPRLAGD-FG-FDPLGVMAEEGA-------YRRKELCANELFNGRLAMLAITGFAAQEFLWG--------- Emiliania_huxleyi_CX772333 --------------------------TRCCWHTRGQ--------------------------------GVGPAWPWRG-GVAV------------PPPLRRDQARPRVHGRLPWHDCWAQRALP-----AYAQLLCPCLG-------------LHFDDIPGGIAAID----SVPAAGWLQIIALVGVHE------------DYTK-------------GFKCEDPEVFR-KQLKELKNGRLAMIAVLGELMAQKVCG--------- Emiliania_huxleyi_CX772408 -------------------------------------------------------------------------------------------SQGNEATWGWLRHAEIKHGRVAMFAFVG-YIAQYNGLHFGFPLC------LP--ECPCYAAGLTPPEQWDALPLLAK----------AQIFTFIGFLE---------RPGDYPDLYDPFGFAGKRCE-------EQKAKGLLAEINNGRAAMIGIMAFLAEQKIPG--------- Emiliania_huxleyi_CX774563 -----------------HATRVAAP-MKAEGEIGVT--------------------------------PPLGVWTRW-LPRG-----------YPRRDYRRYVELEIKHGRIAMLATVGVLTT--EAGFRWPGYLCKCL-------------DLKFADLPGGCFDCY---NAVPALGWLQIVGFVIFLE----DPC-KEPGDVGG---------------------TKKFKLNAERNNGRAAMMGITGMMIHNALGV--------- Emiliania_huxleyi_CX774638 -------------------------------------------------------MCAADGMEGAAHETGFTTWDPLG-----------LADLGCPATLAFFRHAELKHCRVAMAAFTG-WLVAVCGVHFPGLCC------SEGICFEDICQ-LTPMEQWGAVPALGK----------AQILLAIGIIE---------KPGD-LKFWDPIGLTCKMDA-------KKLERQRLCEIKNGRLAMIGIVCVLIANNMPG--------- Emiliania_huxleyi_CX774681 --------------------------------------EALPFLVRRECLGPV-----------GALVG-DVGFDPLGFTEI--------------LPLAWLREAEIKHCRTAMLATFG-FAFTDF------------------WHFPG-----FD-YTTLEAHDAVIAQ-----GGMCQLLLWIGLLE-------GREPGDYG--FDPLGFA--D--------PAKKADLQMKELANGRLAMFAFGG-FVTQC--VLTGNT---- Emiliania_huxleyi_CX775010 ----------------------------------------------------------------------------FGFCVR------------NPERFNRYRAVELKHGRIAMAATTGYMVQ--SF-LRWPGYLCTCA-------------NIKFADLPNG-IAAF---KAIPPAGLFQILLFIGAME----VPEGKAPGDVAG---------------------EKAFKLNAEINNGRAAMMGCLGMLMHDHILG--------- Emiliania_huxleyi_CX775827 MLCFCAGCTTFAGACLRTAPLCRTLPVQMELCWTEY--------------------------------DG-AKWDPLKLA-------------KTPEKFEKLRYVELKHGRIAMLAFLGHAAA--AG-AHLPG--KLAG-------------DLAFADMPTGF-AAL---AATPPLGLLQMFLFVGFLE-------GEFPGDFR--------------------PQQKLEKRCKELNNGRAAMMGILGLMVHENLAG--------- Emiliania_huxleyi_CX776411 ---------------------------------------------------------AYVQTLPG-ICGPLGFFDPAGFCGDN----------ATLGKVKFYREVELKHGRVAMLACLG-FLVGEN---FHPLF-----------------GGNIDVPCYVAFQQTPLQV------FWPAVVFVIACLEEGWAIRADHEPGT-LG-WDPLGLAP-SDP-------AEFKAMQTKELNNGRLAMIAIAGMIAQELVTKT-------- Emiliania_huxleyi_CX777192 ---------------------------------------------------------LKVNGMVG-DCKPLGYFDPLGFCKDA-----------SPETMAKFREAELKHGRVAMLACAG-MITADK---FHPLF-----------------GG---KLCCNPLLAITQV----PKLGLLQILLFIGFMEILNCRRPDYEPGNFLG--------------------PTWDAYQLRELNNGRLAMFGAIGMLTHAYITGK-------- Emiliania_huxleyi_CX777336 ------------------------------------PCNAMPFLTAP-------------PCQCCKLPGAETGFDPLYLC--------------EFIDIKWAREAELKHGRICMLATVG-YIMQEF---------------------FCLPG-YP-GYTPNPIEAVCC----TPPEALAQIVLVLCIIE------PAREPGNLG--FDPLKF--GENK-------ETRERLAMAELKNGRLAMIAFCGMIHQTFVTGK-PLFACL- Emiliania_huxleyi_CX778736 -------------------------------------------------------MALVDCMEGVGEETGGQIWDPLG-----------ICEAVCDEAVMWFRACELKHGRVAMLACVG-YLVGAAKICFPG--E------AKGVTFACVAA-NGPYQAWDAVPQAGK----------LQILCIILALE---------VPGKIEQFWDPLNFTGALCA-------EQKARKRKAELKNGRLAMIGIICFITGHNLPG--------- Emiliania_huxleyi_CX779067 -------------------------------------------------------ADEFAFGLPGG-DNILGNFDPAGFLEG-----------KCKGEVYRLREAELAHGRVGMLAATG-FLVQER---FHPLF---------------SGDG---GPAI---DQIPQLP------WIV-MTIGIGNAE-----------------FDPLNLAP-GNE-------KDLRLMQERELCHGRLGMIAAAGFLAQEAVTG--------- Emiliania_huxleyi_DQ658248 ----------------------------------------------------------GLEALAKKLNPTVGLWDPLGIA------------ETCPETIGWFRHAEIKHGRVAMAAFVG-YCVQCNGIHFPWNIQG---WQTPVVCFADIAAAGGPADQWDALCTPAK----------LQILGVIGFLE---------KPGYFPKLWDPFGFTCKMTP-------ERKEKALLAEVNNGRLAMIGIFGMICACKG-L--------- Emiliania_huxleyi_EG030880 ------------------------------------KCQALPFAERPAK-------------LD-GTLVGDVGFDPLGLCNI--------------LPIEWMREAELKHGRVCMLAVVG-YIVVD--KG---------------LRAPG-AEKLVAATCCFTAHDAAVQC-----GHMWALLLACGLFE------GDRKPGEFA--LTGG-FDRD---------AAKLERFKLAEIKHCRLAMMAFCG-LVTQD--ALCHGA---- Emiliania_huxleyi_EG030976 ------------------------------------KCQALPFMDAPAP-------------LD-GCMAGDKGFDPLNLCGC--------------FDIKWMREAELKHGRVCMLAWVG-YVAVD--NG---------------FYVP-----FAPHVCCLAAHDAAVKA-----GPMLGLLLAVGAIE------TDRRPGDFY--LDP--FNLC------------STPEKRIHAREGDLALPARDV-CIFRRGDPVCPHG---- Emiliania_huxleyi_EG033467 ------------------------------------------------------------------------------------------ED-ACAETLAWYRAAELKHCRVAMAAVTGWAWVCCGGPLFPGYLC------EQGVTFECLGR-DG-YAAWAAVPEAGK----------FQILGVIGILE---------TPGKVP-LWDPLGFTAKLCP-------ETLARKRLAELKNGRLAMIGVMCLVCAHFIPN--------- Emiliania_huxleyi_EG357771 -------------------------------------------LKKP-------------PALDGCMVGDVG--DPLGICTTI----------ELGGDLRYVREAELMHGRQAMLATVG-FVFPKLFGKLPVE-------------------WAKDIC-LNPLEAQYQ----IPPVALGQIAICIAIAE-----DPDYVVGDHG--FG-AGMLKGKCE-------AQVKDMKMKELAHCRLAMVAITGMFFQTAITG--------- Emiliania_huxleyi_EG357835 -----------------------------------------SVDCMIGKYC-----------------IKGTVYDPLDLACK--------------YDVNWLREAELKHGRVCMLAVAG-FLAND--AG---------------WGLPG----LDIKCCCIEAHDRMVEC-----GHMWALLAVVGVCE-------DWEPGNYG--LDPFKLDCP----------------REAELKNGRLAMLAFCG-LVTQA--ALGHA----- Emiliania_huxleyi_EG357978 -------------------------------------------------------PKIKTMMVGDGTLAGDMGFDPLQLA-------------DCPDKLAFYREAEVKHARLAMLAAFGWPVCEITN-----------------------------------------------------------------SKCPDYLPGM-LG-FDPLG--------------ADCQGMRAAEITNGRVAMVAITVFALEEALTR--------- Galdieria_sulphuraria_Lhc3_AJ308253 ------------------------------------QCRAIPFLKAP-------------PCLDGCMVG-DVGFDPLGFC--------------SIIDLRYLRECELKHCRIAMLAVVG-FIVQVFV------------------EFIHLPGD--VFCNPHPMQAIGQ----VPVAGWVQIFLLVAILE--------REPGYFG--FDPLGLAKDK---------QAHDRYLLCELKNGRLAMIACIAFMVQCCRCNEGIIA-QL- Galdieria_sulphuraria_Lhcr2_AJ277213 ------------------------------------KCKAIPFLDRP-------------PALDGCMVGDVG-FDPLNICC--------------YLDLRWLRECELKHCRIAMLAVVG-WFVQEV---------------------FHLPNQIYCACDPTEAFWKTL-----ATGPMGQIVLWTCFFE-------GREPGYFG--FDPLGLGKNP---------QLYKRFQLCELKNGRLAMIAIGGLIHQCFLT-HMGAI-QQ- Galdieria_sulphuraria_Lhcr4_AJ277285 ------------------------------------SP-SVPFLERP-------------QNLDGTAPG-DVGFDPLYIC--------------DLLDIQWLRECEIKHGRIAMLAALG-FIVQEF---------------------VHLPG-QV-FCNKVAVDAFFQ----VPRGGLWQIFLFIGLLE-------NRKPGDFG--FDPLGLGKD---------PQTRRRYQVAEIKNGRLAMLAVGGFIHHMFLT-HQGVVEQL- Galdieria_sulphuraria_lhc1_AJ012759 ------------------------------------WCKALPFMLWP-------------KNLDGTMAGDVG-FDPLGFTN--------------VFDVKWMREAELKHCRIAMLAALG-FMVQE--L----------------WTFPHP--YFCKVPP-VLAHDVYV-----KTGGMCQILLFVIFFE-------KREPGVFH--FDPLGL--GKD-------PDTFRKYEWCELRNGRLAMIAVGGFIHQYWVT-KQGIFEQL- Galdieria_sulphuraria_lhcr5_AJ276862 ------------------------------------MCKAIPFFPKP-------------ERLDECMPG-YAGFDPLGFC--------------DKFDVKFLQEAEIKHCRICMLAALG-WVFPEFW---------------------HLPCEV--FCNTCPLAALGQ----VPKFGLIQILLLVVALE-------EKEPGDFG--FDPLGLGKG----------KCKKWMQTAEIKNGRLAMIAMGAFFHQNLLTNQGVIE-QL- Giraudyopsis_stellifer_Z46920 ---------------------------AFEDAEGAQ--------------------------------APLGFFDPLGLL-ND----------ADQERFDRLRYVEVKHGRICMLAIAGHLVQ--QN-VRLPGYLCICE-------------NIKFTDVPNGL-AAF---SKIPAAGIAQLVAFIGILE--------STPGDMNR-------------------EETQCRKRCIELNNGR-AQMGILALMVHEQLNG--------- Griffithsia_japonica_AY124024 ------------------------------------ACECVPFLEKP-------------SKLDGTRVG-DTGFDPLYLC--------------DYIDLDYAAAAEIKHGRICMLATLG-MLVQ---------------------EVVHLPNA--AFCEPNPLKAIYA----VPIEGWVQIITVICLVE-----------GDLG--FDPMGLGTPD----------KIEELKLKEVKNGRLAIIACTGFIFQILVTGKPILA-QL- Griffithsia_japonica_Gj446_AF517869 ------------------------------------ACACVPFLERP-------------PKLDGCLPG-DVGFDPCGFC--------------NAFELNFLREAELKHGRICMLAILG-WVFPELVG--------------------HLPNEA--YCATNPLYAVGC----VGWLPIIQILAFIAICE-------CANPGNYG--FDPFGLTANP---------KTKQHYELAEIKNGRLAMCAIGGAIHHALLRNVGLVE-QI- Griffithsia_japonica_Gj513_AF517881 ------------------------------------SP-SVPFLPKP-------------KNLCEDMVG-YTGFDPLGLC--------------NLVDIKWLQECEIKHGRVCMLAVAG-ILAQEF---------------------VHLPD-PR-YANPLATEALNQ----VPCAALWQIFLFCGLAE-------GAVPGELG--FNPMNLKIC-------------DDMKLKEIKNGRLAMCAVGGFIHCMFIY-KTPIIAQL- Guillardia_theta_EG720035 ------------------------------------SQ-SVPFLPRP-------------AALDGKMVG-DVGFDPFGFC--------------SKYDIKWLRECELKHGRVCMLACLG-YIVQEF---------------------VHLPF-EA-TCNPVGCEAFYQ----VPAGGLWQIFAFIGAIE-------GRTPGNFG--FDPLGFGKN---------PQARARYELAELKNGRLAMLGFCGMIHGCFITGKGPINALL- Guillardia_theta_EG72369_EG719821 ------------------------------------SY-AVPFLCRP-------------PALDGTMAG-DVGFDPLGFC--------------NYFDLKWLREAELKHGRVCMLGTLG-FLVQEK---------------------FQLPL-PG-FGEKLPIEAFFT----VPTGGLWQIFFTLGAIE-------GRAPGDLG--FDPLNLCCD--E-------SALRRFELAELKHGRLAMIGLGGMLHQQLLT-KQPTLEQL- Guillardia_theta_LHCC10_AF268323 ------------------------------------TMQCNRFCYRCD-------------GLPQWDCEGAD-WAVNGG--LFGA----------VGDVIWAREAEVKHGRICMLAATG-SIVQD--L----------------YHFPFMDKWFKG-EKMWGLHDAAI-----KCGALWQVLFFIGLLE-------VDGTGDIG--FDPLGLKND---------PETFARRQVTEVKNGRLAMIAICGMTHHYFLTGK-GPI---E Guillardia_theta_LHCC13_AF268324 ------------------------------------PCMQDRFAYKT---------------SCGYDIEAPY-WAVNGG--VFGW----------P-DVIWAREAEVKHGRIAMLAATG-LIVQD--L----------------FTFPFYCKWYTG-EKVWALHDKLV-----KVGAAWQVLLFLFALE-------LDGTGDYG--FDPLGLKCD--------------RRAVTEIKNGRLAMIAFGGMMQHYLLTGK-GPV---Q Guillardia_theta_LHCC4_AF268322 ------------------------------------GVNIIPIFPRP-------------ACLDGTAVGDQG-FDPFGFCC--------------WVNMKFVREAEIKHGRIAMLAFAG-IMVEA--AG---------------IKAPGVECVFGPTKDIFEIHNLAV-----EKGCMGQILLWTGFLE-------KRIPGDFG--FDPLGLGKG-----------SMARKQLCEIKNGRLAMLAVCGIVHHTLITGK-GPL---- Guillardia_theta_Lhc3_AJ821803 ------------------------------------FCECVPFLKQP-------------TNLDGCLPGDVG-FDPLGFCE--------------VFDVKVLREAELKHGRIAMLAVLG-WLVQEC------------------YTFP----FFDKVCP-IEAHDLLV-----KCGGMCQILLWTCFLE-------TRYPGDFC--FDPLGLCAGKN-------EANLEKYQLAEIKHGRLAMIAFGGFAHQYFIT-KQGVFEQL- Guillardia_theta_Lhc4_AJ821808 ------------------------------------KCKAMPFLCQP-------------EKLDGCMPG-DVGFDPLGIC--------------TYFDLKWMREAELKHGRICMLAWTG-CLVQEV---------------------IHLPE-SA-EAKKLALDAWAC----APRGGMICILVAIGLIE------PARVPGDLG--FDPLCLGNNP-A-------TRAKYELC-EVIHGRAAMMGFCGVIHQMIVTKQPIIYCLL- Guillardia_theta_Lhc7_AJ821820 ------------------------------------MCEAIPFLEKP-------------KKLDCCMPG-YAGFDPLGFC--------------DYYDVKWLQEAEIKHGRICMLAVVG-MFHPEIA---------------------KLPQFA--SFCTNPLEAFYQ----LCFAGWLQIFVFIGICE-------DKAPGDLG--FDPLRLGCNP---------ACRKYYANAEVKNGRLAMIGFGGMLHHALLTKMGPFQ-QI- Guillardia_theta_Lhc7_AJ821831 -------------------------------------SKCIPFLKKP-------------AALDGTLAGDVG-FDPLGLCCVAD--------------VRFLAEAELKHCRLAMLAALG-AIVQD--I----------------FTFPGVCKVVGC-EKMTGVHDILV-----KQGAMGQILLWVCFLE--------RAPGDFK--FDPLGFGKNA---------QTRERYALAEVKNGRLAMLGFGGMVHGYFLTGK-GPI---E Guillardia_theta_lhc1_AJ821801 -------------------------------------------------------ALMARGDIDGNGVIDYAGFDPLNCA-------------TCMDALKNYREAELKHGRLAMLAAAGWPVCELVQPYLAKMLG------------------------------------------------------------ADYIPGD-LG-FDPLRLYTGKCE-------PVKRDLELKELNNGRLAMLAITAYAYEEFLTK--------- Heterocapsa_triquetra_A_AY826911 --------------------------FAPAAQIGAM--------------------------------EPLGYFDPLGFTCVG-----------DEEGFTKLRACELKHGRVAMMACIGLVGQHF---IKFPGFEKTPAG-------------LGALGTGEGIF------------GFVGIFLLCAVLE-----------------------------GLNMYNEE-MRMK---EICNGRMAMICVLGIFAAEIATG--------- Heterocapsa_triquetra_AY826901 ------------------------------------------FAGGLIGCKY-------------AGFG-EYAWDPAGFCTRYPEH------------LAWYRECELKHGRVAMLAFVG-LVVPDFVR---------------IPLEQFEDCGLDMVTA----HNKLIGP---GEGPMWWLLCVCGAIE------TLENAGDLN--FGKCFLPQT---------AEGKELMKTKELKNGRLAMMAVCG-IFTAGV--TWN-AHH-- Heterocapsa_triquetra_AY826902 -----------------------------------------------------------------VETN-GEIWDPLGFGKLYDRN-FDFNNVMTYPHAQYLRECEIKHGRVCMLAFVG-IVVQC-IVQIPGYPQ--------------EPDWLNALCACYACKVPTLGL--------VQMCVFFMLVE---------EPGDL--GFDPLKLTK-KPG------FD-LKKAQLQELKNGRLAMIAVAAFAANHVIPG--------- Heterocapsa_triquetra_AY826903 ------------------------------------------FAQGLIGAD--------------GAWG-RYEYDPAGLC-QWTEF------------VPYFREAELKHGRIAMLAWVG-LVVPDFVR---------------IPGERYCFEAIPNVLD---AHDKLNG----AVGVNFQILFWIALVE------SLETAGDYG--L-TGFFPAD---------EEGQKRMRLAELKNGRLA-MVAFGGAVTQ?------------ Heterocapsa_triquetra_AY826905 -------------------------LRAFENERG--------------------------------VQVPVGFWDPAGFTADG-----------DATNFARRRQTELKHGRICMLATMGYITP--EITGKLPGFLCPCA-------------GLKFADIPNGLGAIC----KVPAAGWAQIAAYMAFCE---------SPG---T-------------VLTCCDPAEKEKKLCAEIANGRLCMMAIIGMFFQDGLTG--------- Heterocapsa_triquetra_AY826913 --------------------------IDVTKELG--------------------------------VQAPVGFWDPAGFCDDI-----------DEMGFKRLRCCELKHGRLAMMATIGYIWP--ITLGHLPGYLCPCA-------------SLKFCDIPDGLGAIC----KVPNAGWIQILLFACMIE--------SIEEWKTR-------------FGPVTDAGKKERCLNCELANGRLAMAAITGMVLQNGITG--------- Heterocapsa_triquetra_DT382892 -------------------------LRAFENERG--------------------------------VQAPVGFFDPIGYTKDG-----------DMAKFKRRRAVEIKHGRTPCWPPWATCPR--EITGKLPGFLCTCA-------------GLKFADIPNGLGAIC----KGAGCGLGPIAAYMAFCE-------VCQ---------------------TCRR-------ALR----------------LPRVT----------- Heterosigma_carterae_Fcp1_X99697 AAALMGACAFVAPNKMGVAKCCCALKMCFENEIGVQ--------------------------------APLGFWDPLGLL-DE----------ADQERFDRLRTVEIKHGRICMLAILGHLVT--TAGVRLPGAYDLAG--------------DQFCCLPTGL-KAL---SALPAAGVAQTIGFIGLIE--------ELEADCE--------------------DEKKDCKRAIELNNGRAAQMGILALMVHEQLDN--------- Isochrysis_galbana_DQ118573 -----------APMVCRPALCNVRMTAITPGDVGTT--------------------------------KPLGVYDPLGLMTT------------MPDKYRRFQEMEIKHGRICMAAVLHVILT--EAGVRWPGYLCFAE-------------DIKFCDMPGGTWACW---AALPNLAWAQIVLIVALLD----KPD-KAPGDIIP------------------GFCGKEFKLNVERNNGRAAMMGIIGMMIHECLTG--------- Isochrysis_galbana_DQ118574 -----------ALAPMRAPVP--RMCAIQVGDVGTT--------------------------------RPLGVFDPLGLMTK------------MPEKYRRFQEMEIKHGRIAMLAVFHVIWT--GCGHKWDGYCCYLCFP-----------PLKFEDIPAGTLGCW---AALPQAGWAQIVAVVAILD----DPN-REPGDVVG---------------------VKFFKLNAERNNGRAAMMGIIGMMVHECLTG--------- Isochrysis_galbana_DQ118577 -------------------------------------------------------MALVDKMEGVGPETFGKVFDPLG-----------ICCCVCDEAVMWFRHCELKHGRVAMAATVG-CLVCKLGITFPG--D------ANGVPFACVGA-GGPFAAWDAVPTAGK----------LQLFLFIGALE---------VPGKIDPFWDPLNTMGALTE-------EQKATKRKCELKNGRLAMIAIICFICAHYIPG--------- Isochrysis_galbana_DQ118578 -------------------------------------------------------M-GVADMEGVGPETANKIFDPLG-----------FCN-ACPETLAWYRAAELKHCRVAMTAVTGWAWVCCGGPLFPGYLC------SEGVTFECLGR-DG-YAAWDAVPEAGK----------LQIIGTIGILE---------IPGKVP-LWDPLGYTARLCP-------ETLATKRVCELKNGRLAMIGVMCLVCAHFVPG--------- Isochrysis_galbana_DQ118579 ----------------------------------------------------------TKEALAEKLNPAIGYFDPIGLG------TADFWCQGNAATYGFLRHCEIKHGRVAMAAFVG-FCVQCNGIHFPFDLQ------GGGVAQAQYAAGLCPPEQWDALPFAAK----------AQIIAFVGFLE---------QPGKYPELFDPLGLCKGLTA-------DQKETKLCAEINNGRLAMIGIFGFLAAEKIPG--------- Isochrysis_galbana_DQ118580 --------------------------------------------------------PEFCYGLPGG-KNILGEFDPAGFTKG-----------KCQPEVYRYREAELTHGRVCMLACLG-FIIQEK---FHPLF---------------SGDG---GPAI---QQIPQLP------WLV-LTVGIGAAEAETALRDGYQPGD-LA-FDPLGLAP-EDP-------EEFALMQEKELCHCRLAMIAACGFLAQEAVCG--------- Isochrysis_galbana_DQ118581 --------------------------------------------------------SEFCYGLPGN-IAPAGDFDPANLLDG-----------TCEEEVYRWREAELTHGRVGMLAAAG-FLVQEN---FHPLF---------------SGDG---GPAI---EQIPGLP------WFL-MTLGIGVVENVQRLKPGYEPGD-LG-FDPLGLMP-DDP-------DELRTMQERELCHGRLAMLAAAGFLAQEGVCG--------- Isochrysis_galbana_DQ118582 --------------------------------------------------------QPFCKGLPGA-ICPLGEFDPLGFCND-----------VDVLEVNRLREAELAHGRVGMLAAAG-FLVQEK---FHPLF---------------GADG---GPAI---NQIPALP------WFG-LTAAIAAAENFQQLKPDYVPGD-LG-FDPLGLAP-DDA-------DDFRAMQEKELCNGRLGMIAAAGFLAQEAVTG--------- Isochrysis_galbana_DQ118583 ---------------------------------------------------------AKIKGMVG-DCAPLGFFDPFGFCKEA-----------SPACMAKFREAELKHGRVAMLACAG-MITADK---FHPLY-----------------DG---KLCCNPLLAICQV----PKLGLLQIVLFIGFMEILNCRRPDYQPGNFLG--------------------ACWDDFQVRELNNGRLAMFACIGMLTHCCITGK-------- Isochrysis_galbana_DQ118584 ------------------------------------YCQCMPFLVKRKT-------------LD-GYVG-DIGFDPVGFCEI--------------LPMDWLREAELKHCRVAMLATVG-FVFTDF------------------FHICG-----FD-FTTLEAHDACVAC-----GAMCQLLLWLGLLE-------GRAAGDFC--FDPLGFG--D--------PAKMATLQMKELANGRLAMFAFCG-MVTQC--VLTGND---- Isochrysis_galbana_DQ118585 ------------------------------------PCKAVPFLCAP-------------PCQCCKLAGAETGFDPLYLC--------------EYIDIKWAREAELKHGRICMLAATG-YFFQEF---------------------LALPG-FP-GYTPNGIEAATC----VCPECLAQIVLFMCVVE------PKREPGNLG--FDPLHF--GDNK-------ACRARLEMAELKNGRLAMLAFCGMIHQTLVTGK-PVWACL- Isochrysis_galbana_DQ118586 ------------------------------------KCQALPFLEAPAK-------------LD-GCMAGDRGFDPLNLAGC--------------FNLNYMREAELKHGRICMLAWVG-YVAVD--NG---------------FYVP-----FAPHVCCLAAHDTAVKC-----GNMLLLLGAVGVIE------TDRRPGDFC--MDP--FGQA------------DKTMLEKEICHCRLAMFAFCG-VVTQC--ALAGHG---- Isochrysis_galbana_DQ118587 -----------------MRCGALAMCCPYENELGVI--------------------------------QPTGFFDPLNLCCDI-----------DEDTFAQYRTAELKHGRVAQLAVIGYVVP--EF-YRFPGEIAPG---------------IKFADVPNG-VAAID---AIPTLGWAQIIFLIGAVD-------G-FLGDFDA-------------------------RQLCELQHGRLAMIAFLELLRHNCQNY--------- Isochrysis_galbana_IGFcp1_X77333 --------------------------------------------------------DEFAYGLPGG-ANILGEFDPAGFLKG-----------KDKLEVYRLREAETTHGRVAMLACLG-FVVQEK---FHPLF---------------SGDN---GPAI---EQIPQLP------WIV-MTIGIGRAEADCALREGYEPGD-LG-FDPLGLAP-SDP-------DEFRLMQEKELCHGRLAMIAAAGFLAQEAVCG--------- Isochrysis_galbana_ISL00000009 ----------------LMPCRCCGACMRAEGEIGVT--------------------------------PPLGVYDPLGLLAT-----------YPRRDYRRYVELEIKHGRIAMLATVGVITT--EAGFRWPGYLCKCL-------------DLKFADVPGGCFDCY---NAVPALGWLQIVLFVVFLE----DPN-KEPGDIGG---------------------TKMRKLNIERNNGRAAMMGILGMMTHNALGV--------- Isochrysis_galbana_ISL00000011 -----------FLDVTGKPYKEVNTFIPAYDEIGVV--------------------------------PPIGRWDPLQIREQ------------GPDRYRRFVEMEIKHGRMAMAAFLGVITT--YCGMRWPGYLCTCE-------------NIKFCDIPGGAIACW---AALPTCAWLQIVIFICALE----DPE-KAPGDVVP------------------LFLGKTWKLNAERNNGRAAMMGITGMVIHEALTG--------- Isochrysis_galbana_ISL00000222 --------------------------DP---IFGGT--------------------------------PEGKIFDPLGFGADE------------GCLYRR-RCVEIKHGRVCMVAFLGMTVGPNELFAPCHQLLCPCLD-------------LYFDDIPGGIAAIE----AVPAAGWFQILAVVGIHE------------DYTK-------------GFKPDDPEVFRNKQLKELKNGRLAMIAVLGELMAQQVCG--------- Isochrysis_galbana_ISL00000652 -------------------------------------------------------LATALALLCCACVRQCLCCAPCGGT---------LAHMLCDDCVLFCRHAPCTHAQVAMAAFTG-WLVAVCGVHFPGLCC------SEGVCFEDICK-LTPLEQWTAVPMLGK----------AQILLAIGIIE---------QPGN-LKFWDPVGFTCKLCA-------AKLERQRLCEIKNGRAAMIGIICVLIAHNVPG--------- Isochrysis_galbana_ISL00000731 ------------------------------------RCACIPFLKKP-------------PALDGCMIGDVG-FDPLGFCTTI----------ELGGDLRYVREAELMHGRQAMLAAVG-MVFPKVFGKLPAP-------------------WAECVC-TNPLEAQYQ----LPPVVLGQIAVCIFIAE-----DPCYVVGDHG--FG-SKFLNGKCD-------AQVADMKLKELNNGRLAMIAVTGMFFQIAIKG--------- Isochrysis_galbana_ISL00001344 -------------------------------------------------------PLTCTMRVGDNTLAGDFGFDPFQLA-------------ECPERLAYYREAEVKHARLAMLAAAGWPMAELLNKPLCDALG---------------------------------------------------------KRDPKYIPGM-LQ-FDPLG--------------MDCPTMRNAEITNGRIGMIAITAFALEEFVFK--------- Isochrysis_galbana_ISL00001475 -----------------------------------------DVNCMLGKYC-----------------VKGIVYDPLGLACK--------------YDVNWLREAELKHGRLCMLAFAG-FLAND--AG---------------WGIPG----LNIKCACIDAHDKMVAC-----GHMWALLAFVGICE-------DYRPGNYG--LDPLKLDTP----------------REAELKNGRLAMLAFCG-VITQA--ALGHT----- Isochrysis_galbana_ISL00001514 ---------------------------------------------------------FCVKDLPG-ICGPFGFFDPLGFCEG-----------ACEGKIKFYREVELKHGRVAMLAALG-FLVGEQ---FHPLF-----------------GGCIDVPCYIAFQETPLQT------FWPAVVVAICVMEEPWCVRCDYECGD-LG-FDPLGLKP-TCA-------AEYKEMATKEINNGRLAMFAIAGMIGQELATGA-------- Isochrysis_galbana_ISL00004541 ------------------------------------KCQCLPFLEKPVN-------------LD-GCMAGDVGFDPLGLCNY--------------FPLAWMREAEIKHGRVCMLAIVG-YIAVD--FG---------------LRAPG-AAKLGCLTC-FCAHDATVAC-----GHMWALLGVAGIAE------SGRAPGDFA--FDGG-FAKD---------AAKLERFKLCEVKHCRLAMMAFCG-LITQD--ALANGG---- Karenia_brevis_CO063314 ---------------------------------------------------------FDVKDLAG-ITEPFGFFDPLGLCEGV-----------SEGRLRFYREVELKHGRLGMLAALG-FLVGEQ---WHPLF-----------------GGDIDVPAYLAFQQTPLEK------FWGLVVAAICVNEEPWCIRCDHEPGN-LL-FDPLKLRP-EDP-------KEWLEMQNKELNNGRLAMLAAAGMIAQEYVTGE-------- Karenia_brevis_CO064441_CO061242 --------------------------------------------PERQAD-VRMETLDDLIKLAEENPGPFGYWDPLKLA------EKEFWGQCNEATIGFLRHAEIKHGRVAMAGFVG-YCVHENGIHCPWKLC------KALPDYCTFEG-LCAPAIWDATPQGGR----------LQILAVIGFFE---------KPGYFPTLFDPFGFTQRIVG------------------------------------------------ Karenia_brevis_CO064464 ----------------------------------------------------------DLEVLAKQLNPFVGFWDPLQIA------NYDQFRKGEEACVGFLRHAELKHGRVAMAAFIG-YIVQANGFFWPGKLT------LAGKTFADICAAGCPPDQWDALPTGGK----------LQILLFIGLLE---------KPGCYPPLFDPFDLQKDMTP-------ERKEKALLAEINNGRLAMLGIM-LPC--------------- Karenia_brevis_CO065025 --------------------------------------------HVRHAD-ARMETLDDLKTLAVEQNPVVGYFDPLKLA------EGEFWGQCNEATIGFLRHAEIKHGRVAMAGFVG-YCVHENGIHWPWKLC------TCLPDYCCFQG-LCAPAVWDATPQAAR----------LQILIIIGFFE---------KPGYF-T------------------------------------------------------------- Karlodinium_micrum_DQ118610 ---------------------------------------------------------SPIADWAG-VTAPLGFFDPVGFCNDI-----------SEGRQRFYREVELKHGRLAMLAALG-MLVAEQ---FHPLF-----------------GGEIDVPAILAFRETLLEA------IYIAVLFCIFIPEEPWCIREDHEPGN-LG-FDPLGLKP-KDT-------SEFKEMQTKELNNGRLAMLGAAGMIAQELVKTD-------- Karlodinium_micrum_DQ118611 ---------------------------------------------------------FDLEEQAG-VTAPLGFFDPVGFCEDL-----------SEGRARYYREVELKHGRLGMLAALG-FLVGEN---FHPLF-----------------GGDIDAPAYLAFQQTPLET------FWGIVVAAIACLEEPWCIRCDHVPGD-LG-FDPLNLKP-TDP-------EELKTMQTKELNNGRLAMLAAAGMVAQELATGN-------- Karlodinium_micrum_DQ118614 ---------------------------------------------------------LDAEDLAG-VTAPLGFFDPAGFLTDK-----------TAGKVRFYREVELKHGRLGMLAALG-FLIGEN---FHPLF-----------------GGDIDAPGYLAFQQTPLQT------FWPAVVTAIAILEEPWCIRCDHVPGD-LG-FDPLNLKP-TDA-------EELKTMQTKELNNGRLAMLAAAGMIAQELAT?--------- Karlodinium_micrum_DQ118615 ---------------------------------------------------------FDIKQLAG-VTAPVGFFDPVGFTTDK-----------SEGKIRFYREVELKHARLGMLAALG-FLVGEN---FHPLF-----------------GGNIDDAAYLAFQQTPLQT------FWPAVVTAIAILEEPWCIRCDHMPGD-LG-FDPLNLKP-TDP-------EELKTMQTKELNNGRLAMLAAAGMIAQEFATGQ-------- Karlodinium_micrum_DQ118616 ---------------------------------------------------------FDIKDLAG-VTAPLGFFDPVGFTEGK-----------SEGKIRFYREVEIKHGRLGMLAALG-FLVGEN---FHPLF-----------------GGDIDVPAYLAFQQTPLQA------FWGAVMLQIAILEEPWCIRCDHIPGD-LR-FDPLNLKP-TDP-------K?--------------------------------------- Karlodinium_micrum_DQ118621 -------------------------------------------AAPRTGN-ADMCALDELIELAECTPGPVQYWDPLGLC------EMDFWGAGNDATIGFLRHAEIKHGRVAMAGFVG-YCLHENGIRWPFPLC------SCLPDYCCFEG-LCAPDVWDATPLAAR----------LQIIAVIGFFE---------KPGQFPALFDPFGFTADLCE-------EELATKRLREVQNGRLAMIGLFCLICEARVPG--------- Karlodinium_micrum_DQ118623 --------------------------------------------VCARCC-VRMETLCDLKDLAKCQNPVVGYFDPLNLA------EGEFWEQCNEATIGWLRHAEIKHGRVAMAGFVG-YCLHENGIRWPWPLA------TCLPDYCCFEG-LCAPAVWDAIPTACK----------VQILLVIGFFE---------KPGYFPTLFDPFGLTKKLCE-------EQKAKKLNAEVNNGRLAMLGLMCLICEAKVPG--------- Laminaria_digitata_AW401184_AW401128 APGLRDPQRLQRCRADHLGQVLFRHEDVLRIRDRRP--------------------------------GPPRLLGPARPL-GD----------ADQERFERLRYVEVKHGRIAMLAIVGHLTQ--QN-TRLPGMLCNCA-------------NLCFADMPNGV-AAL---SKIPPAGLAQIFGFIGFLE--------SFPGDFTI-------------------EETQNCKRAIELNNGRAAQMGILALMVHEEINN--------- Laminaria_digitata_CN467240_CN466737 AQAFVAPCAFNGAALTTCAKCCCAMKMCFECEIGAQ--------------------------------APLGFWDPLGLL-AD----------ADQERFERLRYVEVKHGRIAMLAIAGHLTQ--QN-TRLPGMLCNCA-------------NLCFADMPNGV-AAL---SKIPPAGLAQIFGFIGFLE--------SFPGDFTI-------------------EETQNC-RAIELNNGRAAQMGILALMVHEELNN--------- Laminaria_japonica_Lhcf6_A_DQ250739 AQAFVAPCAFNGAALTTCAKCCCAMKMCFECEIGAQ--------------------------------APLGFWDPLGLL-AD----------ADQERFERLRYVEVKHGRIAMLAIAGHLTQ--QN-TRLPGMLCNCA-------------NLCFADMPNGV-AAL---SKIPPAGLAQIFGFIGFLE--------SFPGDFTI-------------------EETQNCKRAIELNNGRAAQMGILALMVHEELNN--------- Laminaria_japonica_Lhcf6_B_DQ250739 AQAFVAPCAFNGAALTTCAKCCCAMKMCFECEIGAQ--------------------------------APLGFWDPLGLL-AD----------ADQERFERLRYVEVKHGRIAMLAIAGHLTQ--QN-TRLPGMLCNCA-------------NLCFADMPNGV-AAL---SKIPPAGLAQIFGFIGFLE--------SFPGDFTI-------------------EETQNCKRAIELNNGRAAQMGILALMVHEELNN--------- Laminaria_saccharina_Lhcf2_AF226858 HACFAFHCAFNGAALTTCAKACCAMKMCFECEIGAQ--------------------------------APLGFWDPLGLL-AD----------ADQERFERLRYVEVKHGRIAMLAIAGHLTQ--QN-TRLPGMLCNCA-------------NLCFADMPNGV-AAL---SKIPPAGLAQIFGFIGFLE--------SFPGDFTN-------------------EETQACKRAIELNNGRAAQMGILALMVHEELNN--------- Laminaria_saccharina_Lhcf5_AF226861 AQAFVAPCAFNGAALTTCAKACCAMKMCFECEIGAQ--------------------------------APLGFWDPLGLL-AD----------ADQERFERLRYVEVKHGRIAMLAIAGHLTQ--QN-TRLPGMLCNCA-------------NLCFADMPNGV-AAL---SKIPPAGLAQIFGFIGFLE--------SFPGDFTN-------------------DETQACKRAIELNNGRAAQMGILALMVHEELNN--------- Laminaria_saccharina_Lhcf6_AF226862 AQAFVAPCAFNGAALTTCAKCCCAMKMCFECEIGAQ--------------------------------APLGFWDPLGLL-AD----------ADQERFERLRYVEVKHGRIAMLAIAGHLTQ--QN-TRLPGMLCNCA-------------NLCFADMPNGV-AAL---SKIPPAGLAQIFGFIGFLE--------SFPGDFTI-------------------EETQNCKRAIELNNGRAAQMGILALMVHEELNN--------- Lingulodinium_polyedrum_BP742312 -----------------------------ENELG--------------------------------VQAPLGFWDPAGFTADG-----------DVENFKRRRNTEIKHGRICMLATMGYITP--EITGKLPGYLCPCA-------------GLKFADVPNGLAAIC----KVPAAGWAQIIAYMAFCE---------SPEF--K-------------VLTCCDPAEKTKKLNAEIANGRLCMMAIIGMFFQDGLTG--------- Lingulodinium_polyedrum_BP743285 -------------------------LRAFECELG--------------------------------VQPPVGFWDPLGLCKDG-----------DVATFNRRRATEIKHGRICMLATMGYITP--ELTGKFPGYLCPCA-------------DLKFEDVPNGLAAIC----KVPGFGWFQIVAYCLYCE----------YNED-Q-------------LLATDDAELKKKRLNAELANGRLAMMAIIGMFFQDGLTG--------- Lingulodinium_polyedrum_BP743367 -----------------------------------------------------------SMVGCDVEIGDGKAWDPLGFGKLFDRN-FEMNMVMVYPHVQWLREAEVKHGRICMIAFVG-MVVQK-FVTIPGLPV--------------EHDWTKALAACYEDKNATLGI--------IQICLFTMLVE---------EAGDY--GFDPLKLAK-KPG------FD-LKTAQLKELKNGRLAMIGVACMAAAYCIPG--------- Lingulodinium_polyedrum_BP743813 --------------------------FNPAKEVGAL--------------------------------APLGYFDPLGFCCVG-----------DEGGFCKLRAAELKHGRVAMMACVGLLGQHF---LKFPGFEKTPAG-------------FGAIATGEGVF------------GMLGLFIACAVME-----------------------------GVKMYTED-MRNK---EICNGRFAMICVFGIFAAEMVTG--------- Lingulodinium_polyedrum_CD809390 -----------------------------------------------------------------------------------------------------RREVEIKHGRVCMFATIGYIIP---EYVKFPGYLCPCT-------------DLKFEDVPNGLAALC----KVPVAGWGQIVAFIGFIE-----YGE--PG---N-------------SCCIPDPALREKKLCAELANGRLAMMAIIGMFFQDGLTG--------- Lingulodinium_polyedrum_CD809793 --------------------------FAPAEQVGAM--------------------------------APLGFFDPLGFTKVG-----------DEEGFRNLRTAELKHGRVAMMAALGGVAQHY---IKFPGFECVPCG-------------VAAVATPPGTY------------GFVALFLLCGALE-----------------------------GLGMYDEE-TRNK---EINNGRFAMFAAIGIICAELLTG--------- Lingulodinium_polyedrum_CD809920 --------------------------FDPATQVGAT--------------------------------EPLGYWDPAGFCKTG-----------DECGFRNLRAAEIKHGRVAMMAAAGAVAQHF---IKFPGFEKVPAG-------------LAAALTPPGCY------------GLILLFALAGGLE-----------------------------GLGAYDTE-TRNK---ELNNGRAAMFCRHRHHRC?------------- Lingulodinium_polyedrum_CD809947 ------------------------------------RCACVPYLMYPAQ-------------LD-GFVGCEKGFDPLRVTE--------------ALPVYLCREAELKHGRVCMLATVG-WIATD--LG---------------VRFPG---EMFAKCTTVCAHDDMVAA-----GIMGPMLATVGVLE------IERDAGDYF--LGKNFLPKTE---------DGAREMKLKELENGRLAMFAFCG-IVTQA--VLTGKC---- Macrocystis_pyrifera_Pfcpa_U10065 APGLRRPCAFNGAALTTCAKCCCAMKMCFECEIGAQ--------------------------------APLGFWDPLGLL-AD----------ADQDGFERLRYVEVKHGRIAMLAIAGHLTQ--QN-ARLPGMLCNCA-------------NLCFADMPNGV-AAL---SKIPPAGLAQIFAFIGFLE--------SFPGDFTL-------------------EETQACKRAIELNNGRAAQMGILALMVHEELNN--------- Macrocystis_pyrifera_Pfcpe_U10069 APGLRGAEPFNGAALATCAKCCCAMKMCFECEIGAQ--------------------------------PPIGFWDPLGLV-AD----------ADQERFDRLRYVEIKHGRIAMLAVVGHITQ--QN-TRLPGMLCFKE-------------NLAFADCPNGV-AAF---SKIPPLGTLQIILAIGCHE--------SFPGDCTT-------------------EETQACKRAIELNNGRAAQMGILAMMVHEQLCN--------- Mesostigma_viride_MVL00002413 ----------------------------------------------------------AG--LPGKCAPFGDGFDPLNFLGG-----------KTTAEIKMLRECELVHGRVAMLATLG-FVVGETFNPL--------------------FGGCITGPAINQFQQVPQP-------FWELVVLAIGLAE-FCVLKECYTPGT-LG-YDPLGLKP-TNC-------KELDEMATKELNNGRLAMIGIAGMVVQELITQ--------- Micromonas_sp._MSL00000056b ----------------------------------------------------------TQAGIVAGCAPFPEGVDFFGFYNG-----------IDEKEAQRYADVEITHGRIAMLACLG-FLVGEQVEGCAFLF-----------------DANITGPAIDHFQQVPGT-------FWGLLGAVIFTIEKLFLLKDDYTPGD-YN-FDPLKLCAGKDD-------VWLNDMKLKEVNNGRVAMVAICGMVAQELVNG--------- Micromonas_sp._MSL00000740 ----------------------------------------------------------VDAGLIQGVAPFPEGIDVFGFFND-----------IDQAEAQRYADVEITHGRLAMLACVG-FLVGECVEGCCFLF-----------------DCQVTGPAINHFQQVPLP-------FWLGLGALIFIVERLGLMKDDHTPGD-YG-FDPLGLCKGKDE-------EWLDIHRLRELNNGRLAMVAITAMVAQELNTG--------- Odontella_sinensis_FcpA_X81054 AALLAGCAAAFAPA--QCGKACTALNMAFECELGAQ--------------------------------PPLGFFDPLGML-AD----------ADQERFDRLRYVEVKHGRIAHVAFLGQIVT--RNGIHLCGNIDYAG--------------NCFDCFPNGW-AAICGPDAIPQAGLLQIVAFVGILE------EGEFPGDFR--------------------EETKLCKRAIELNNGRAAMMGILGLMVHEQLG---------- Odontella_sinensis_FcpB_X81055 AALLAGCAAAFAPA--QCGKACTALNMAFECELGAQ--------------------------------PPLGFFDPLGML-AD----------ADQERFDRLRYVEVKHGRIAHVAFLGQIVT--RNGIHLCGNIDYAG--------------NCFDCFPNGW-AAICGPDAIPQAGLLQIVAFVGILE------EGEFPGDFR--------------------EETKLCKRAIELNNGRAAMMGILGLMVHEQLG---------- Ostreococcus_lucimarinus_7949 ----------------------------------------------------------TAAGLVGACAPFPEGLDVLGFCNG-----------IDGACLQRYREAELTHGRVCMLATVG-FLVGEQVEGCCFLF-----------------DAQVTGPAVNHFQQVPTP-------FWFAIGATIAIAEKLFLLKDGYTPGD-LN-FDPLGLGRGKCE-------EELDELRLKELNNGRLAMICICGMIAQELVDG--------- Ostreococcus_tauri_6427 ----------------------------------------------------------TAAGLIGACAPFPEGLDILGFCNG-----------VDGATLQRYREAEVAHCRVCMLATVG-FLVGEQVEGCCFLF-----------------DAQVTGPAVNHFQQVPLP-------FWFAIGCVIAIAEKLFLLKDGYTPGD-LC-FDPLGLGNGKCA-------EELDALRLKELNNGRLAMIAICGMVAQELVDG--------- Pavlova_lutheri_PLL00000003 AQIAVAALAFCAPALRCRTPARCQAVMTFEEEIGVV--------------------------------APLGFYDPLGLL-DN----------ADEERFERLRYVELKHGRICMLAVLGHIVT--AAGIRLPGEICFG---------------LPFADVPAGL-KAL---EVVPAAGLAQIVAFVGFLE------EGEFPGDFR--------------------DETKEQKRNIELNQGRAAQMGILALMVHEKLDN--------- Pavlova_lutheri_PLL00000004 ------------------------------------KCRALPFLEAPPA-------------LD-G-LIGCQGFDPLKCCTY--------------VCTKWLVECELKHGRICMLATAG-WIATD--LG---------------VRFPG--AAYQVGP--LAAHDAMVAK-----GDMLVLFIAACLFE------TPAKPGEYF--FDPLNLGKG-----------NAERMQLAEIKNGRLAMLAFCG-IVTQA--ALYGKP---- Pavlova_lutheri_PLL00000019 ------------------------------------KATKAPKPQAD-------------YGICGGFLECGGVYDPLNYAA-------------GKD-INRLRCVELKNGRICMLATLG-YVVQEVYC-W--------------------PNDQGYFDGCNPITTFAT----VPVFGVLQILLVCGLIE-----WQTREPGDIG--FDPLGLAKNGIN----------PAYADAELKHARLAMVGWLGFVTQCLVTGKGVLATTFD Pavlova_lutheri_PLL00000092 -----------------------------------------------------------DLPGACIELG-GKPWDPLGFAKLNALP-TGC-GPACNPCLKWLREAEVKHCRVAMLAFLGTAFQTF-GPHLPGAAFC-------------EPDWFKACYTFCAQN--PGGA--------AQILLGIAIIE---------AAGAL--GFDPLGLCKGLPK-------AKADEMQLKELKNGRLAMIACAALACCKLIAG--------- Pavlova_lutheri_PLL00000098 ---------------------------------------------------------PQIKCDAG-VCAPFGYFDPAGLMCNG-----------QQADYARYKEVEIKHGRLAMLAATG-FVVGEQ---FHPLF-----------------GGNIDAPCAFAFQQTPLQT------FWPLVVAAIGLVEALWKMKAGRVPGD-LG-FGGAAKAK-SDP-------AGFKGMQTREINNGRLAMLAVAGMTAQELVTGQ-------- Pavlova_lutheri_PLL00000288 --------------------------------------KCIPFVKAP-------------PALDGCMPGDVG-FDPLGICTTI----------ELNGDLKYVREAEIVHGRVAMLAAAG-FIFPEIFK-------------------------FREYC-SRALEAQAQ----VPVEVWCQIFIGIAIAE-----DC--VPGCHG--FDPLGFKCKFGG------AEGYKTLQLKEIKNGRLAMMAVAGMFTQQLLTG--------- Pavlova_lutheri_PLL00000387 ------------------------------------S-AAIPFVAKP-------------KNLNGELLCDIG-FDPAGFTN-K----------ACPEKIAKFREAELKHGRVCMLAVLG-FVAQELIA----------------------PYQAAPFNEVNPINAIAA----VPALGILQIIVLCGIIE-----YAGRIPGDIG--FDPLGLCAGGIK----------EDWAIAEIKHGRLAMIAFLAFQVQIKVCGECVLCTTFD Pavlova_lutheri_PLL00000398 ---------------------------------------AVPFLEKA-------------SKLGKGMLG-DVGFDPLYLC--------------ECMDLKWLREAELKHGRVCMLGVVG-LVVPEF---------------------VRLGG-PY-YDCPNPIEAFAK----VPVEAWAQILLAIGIFE------PARVPGKVG--FDPLRM--GGC-----------TDLELKELKNGRLAMLAFGGMLHQVFITGH-PVLQGF- Pavlova_lutheri_PLL00000435 ----------------MKTVAKVACCCAYANALGVI--------------------------------EPTGFFDPAGLCNGI-----------DQATFDQYRTAELKHGRVAQLAVLGYIAP--EI-YRFPGDIAPG---------------ITFACIPNG-VAAID---AIPALGWAQIIFLIGAVD-------G-FLGDFDA-------------------------RQLQELQHGRLAMLAFLELLRHDCQNY--------- Pavlova_lutheri_PLL00000672 ---------------------------------------------------------VAVKDMVG-VCAPLGYFDPLGFAK-------------NPEKVNYLREAELKHGRTAMWAVLGWMTTACG---FHPLI-----------------DGLKIAPGATPLADAANM----PGATWFQIIAFVCVVELILQKNPNYKPGDLLG--------------------LGWKRYQLAELNNGRLAMMGFAGLVAECLIFNH-------- Pavlova_lutheri_PLL00001579 ---------------------------------------MVTLECLPGKYA-----------------LGG-VFDPLGLGEK--------------GDVVWLREAELKHGRVAMLAVVG-YIVND--LG---------------IHFPGE---QYAGICCLAAHDAMLKT-----GNMQQLLYAVIVCE------SDYKIGCFE--LDPLNMANE----------------RLAEIKNGRLAMFAICG-ILTQC--ALTHGG---- Pavlova_lutheri_PLL00003241 -------------------------------------------------------------------------------ANA--------------QTLPWMIEAELKHGRVCMLAVLG-WVAVD--LG---------------FHFPC--------TTCRGCPR-PRTT----RCCLATCCACCCLRR------TARCRATCA--LTRCHFKGC------------YVKLQVNEIKNGRLAMLAFCG-IVTQA--ALTGKG---- Phaeodactylum_tricornutum_10243 -------------------------------------------------------------------MPGDVGFDPFGFV-------------DCEACLVCFREAEIKHARLAMLAAAGWPLCELFDRQFACWLD-----------------------------------------------------------DPDYFPGK-LG-FDPLGLYP-STT-------TGKRRMELAEIKNGRLAMIAITGFAFQEFVQQ--------- Phaeodactylum_tricornutum_11006 ------------------------------------MCKCMPFLTAP-------------KN-TGGYVG-DVGFDPLGFC--------------DNFDMKWLRECEIKHGRAAMLATVG-FVMQQF---------------------WTLP--GM-VHVDDCNLAPGA----AGICPMLQIVFGMGALE------SCREPGNLG--FDPMGMCKNKCK-------EEAEAMQLKEIKNGRLAMLAIGGMIHHNWVT-GEALF---- Phaeodactylum_tricornutum_14386 -----------------------------------------------MPGAI-------------NFAAKEFKFDPLKLAETYEPF------------LPWFRECELRHGRTAMLAVVG-FIATDFVR---------------IPGEAYCFAAIPKTID---AHDALLK-----SGPMYQLLLWIGLWD------GERTPG-DF--GWTLMAPKD---------DAKMQKKKDCELLNGRLAMVAVGG-IATQCV--ITG--HG-- Phaeodactylum_tricornutum_16302 -------MAHGGCHKLCNTALRVTG---FEDELGVQ--------------------------------KPLGFWDPLCVC-DG----------ADQARFDELRYVEIKHGRVAMLAIVGHMVT--SAGVRWPG--SIGG--------------VCYCNIPAGL-AAF---ERLPICGLAAIFVAIGFLE------VAQYPGDLR--------------------PEEQLEKRAIELNNGRAAQMGILALMVHEKLNN--------- Phaeodactylum_tricornutum_16322 -----------------------------EKEIGVL--------------------------------PPIGFFDPLGFTTRG----------SREENFRHYRGVEVKHGRIAMAATLGTLVQ--QN-YRFEGFLCPCA-------------NLEFAEVPNG-LAAL---DVVPLAGWVQMAVVIGAHE----RP-GRKPGDFGT--------------------AKQLRLLNVEVCNGRLAMLGILGMFACEIIHG--------- Phaeodactylum_tricornutum_16481 ---------------------------------------------------------MPKNKLLDGCYPGDAGFDPLFLA-------------DCQALLEDYRDAEIKHGRLAMLAALGWPACEVWDRAIANAVC-----------------------------------------------------------DDRWFPGN-LN-FDPLGLYP-KCE-------AKQREMQLKEIKNGRLAMIAITAFAIQEAIVG--------- Phaeodactylum_tricornutum_17531 ---------------------------------------------------------WKDETVVG-ITAPVGFFDPLGLCKDK-----------NDETMGYYRECELKHGRVAMAACLGWFITAGG--T-HPAF------------------N-S-ELCCDPLEAARQL----PFVAWLQFILGCGAVEEQIKKRPGYVPGDVLG--------------------EGWVDYQNKELNNGRLAMLAIAGIYAQDILFNN-------- Phaeodactylum_tricornutum_17766 ------------------------------------ACECLPFMEYPPN-------------LK-GYVG-DAGFDPFRFCDF--------------LPMDFLREAELKHGRICMMATAG-FAAVDLGLR-------------VYPLPEG-----YEGLTCVTAHDALVKQ-----GGMGQMLLWFCFLE-------GRRPGDFG--FDPAGFLKND--------AKKEEDMMLKELTNGRLAMLAFCG-MVTQA--VLTQGP---- Phaeodactylum_tricornutum_22006 LACLIATAAAFAPA-QKAVTCTALCACNFEDALGAQ--------------------------------PPLGFYDPLGLL-DG----------ACECKFERLRYVELKHGRICMLAVVGYLVT--EAGIRLPGNIDYCG--------------TKFTDIPGGF-DAL---SAICKEGLGQIIGFIFFLE-------GEFVGDFR--------------------EETKLKKRAIELNQGRAAQMGILALMVHEQLG---------- Phaeodactylum_tricornutum_23257 ------------------------------------RCRAVPFLPRPIN-------------LD-GCCPGDQGFDPFYLCCIPKNFPP-SWETGGICTLYWMREAEIKHCRVAMLAVTG-WIATD--FG---------------VRFPGAGAPYTDIPNAYNAHNILVDQ-----GTMTVMLLAIGFVE------TDRDAGDFG--FDG-GLLKGK-------SAEAIKTMKTKEVNNGRLAMLAFGG-IATQT--ALGEAT---- Phaeodactylum_tricornutum_25893 ---------------------SCCALKAFENEAGVI--------------------------------QPTGFFDPFGLCKGK-----------DMATFDQYRTAELKHGRVAMLCVIGYVVP--EF-YRFPGDIAPG---------------LKFADVPNG-VAALC---AIPALGWAQIFFLVGAVD-------G-VLGDFEY-------------------------RQTQELQNGRLAMLATLELLRHDCQNY--------- Phaeodactylum_tricornutum_30643 LACIAAGAAAFAPCQGQCARACVATNMAFENEAGVT--------------------------------APLGFYDPLGLV-SD----------GDEAKFKRLRFVELKHGRICMLAVVGYIAT--ATGNRLPGTIDFAG--------------TKFCDIPAGF-GCL---ANIPAAGLCQILFFIGLLE-------GECVGDFR--------------------DEEKARQYNVELNQGRAAQMGILALMVHEQLGN--------- Phaeodactylum_tricornutum_34536 -------------------------------------------------------VTRVALDDLAGCTAPLKRFDPLG-----------LAQVGCEQTFAWFQAAELKHCRAAMLATTG-FIVQAAGIHFPG--M------SKDICFECLCG-MNPVEQWAGVPDAGK----------WQIILTIFIAE-----------GD-LPVFPPIDFCKVDAA--------TLKTKRCRELNNGRLAMIGIMCFICEYNIPG--------- Phaeodactylum_tricornutum_48882 -----------------TLCTALQCCCCYENELGAI--------------------------------DPVGFFDPAGLTCNI-----------DEETFRRYRAGEIKNGRVAMLAVIGYIVP--EF-YRFPGELMPG---------------LAFKDIPNG-IAAVN---AIPCIFWMTTFFAIGMVD---------NLGYHEI-------------------------RRTNEVCNGRLAMLAFFELLRHDWQNT--------- Phaeodactylum_tricornutum_6062 -------------------------------------SIAIPYEGAP-------------ALLDGCLVGDVG-FDPCFLCTKA----------VCIDGLTWYREAELMHGRICMIAVVG-FIAPG-FGTFEGN----------------AWTGADAFCNTNPLEALGA----APCACIFQIFAFMAALE-----GNNYQPGDCQ--RWGQGDGRWNPL-----SPEEYEEKQLQEVKHARLAMVGLLGLLFQANACG--------- Phaeodactylum_tricornutum_9799 ------------------------------------MCKCIPFLVKP-------------DKLDGCMAG-DMGFDPMRLCD-------------IQTDLKYARWCEIKHGRICMLAIVG-ILVQQAG--------------------IHLPG-EQ-FTNTDIFGAVDC----VGFGANMQIFAGIGAVE------GE--PGDLG--FDGGQLKGAC-A-------DKIALRKEQEIVHCRLAMIAFLGAMGQTLLFGQ----ALP- Phaeodactylum_tricornutum_AC151931 -------------------------------------------------------INLQKEDLVGA-IPPVGFFDPLGFADK-----------ADCPTLKRYREAELTHGRVAMLAVVG-FLVGEAVEGCCFLF-----------------DACICGPAITHLCQVPAP-------FWVLLTIAIGACEKPGLLRDDYVPGD-LG-FDPLGLKP-SDP-------EELITLQTKELQNGRLAMLAAAGFMAQELVNG--------- Phaeodactylum_tricornutum_Fcp2_X55156 IACLIAGAAAFAPA-KNAARTCVATNMAFEDELGAQ--------------------------------PPLGFFDPLGLV-AD----------GDQEKFDRLRYVEIKHGRICMLAVVGYLVQ--EAGVRLPGTIDYCG--------------KTFAEIPN-V-AAF---KEIPAGGLVQLLFFIGVLE------EAEFVGDFR--------------------EETQFKKRAIELNQGRAAQMGILALMVHEQLG---------- Phaeodactylum_tricornutum_FcpA_Z24768 FACLLACRAAFAPA-QQCARTCVATNMAFENEIGAQ--------------------------------QPLGYWDPLGLV-AD----------GNQEKFDRLRYVEIKHGRICMLAVAGYLTQ--EAGIRLPGDIDYCG--------------TCFECIPNGF-AAL---SAVPGAGIAQIIAFIGFFE-------GEFVGDFR--------------------EDKKLQKRAIELNQGRAAQMGILALMVHEQLG---------- Phaeodactylum_tricornutum_FcpC_Z24768 IACLIAGAAAFAPA-KNAARTCVATNMAFEDELGAQ--------------------------------PPLGFFDPLGLV-AD----------GDQEKFDRLRYVEIKHGRICMLAVVGYLVQ--EAGVRLPGTIDYCG--------------KTFAEIPK-F-AAF---KEIPAGGLVQLLFFIGVLE------EAEFVGDFR--------------------EETQFKKRAIELNQGRAAQMGILAFMVHEQLG---------- Phaeodactylum_tricornutum_FcpF_Z23153 FACLLACAAAFAPA-QQCARTCVATNMAFECELGAQ--------------------------------PPLGFFDPLGLV-AD----------GDQEKFDRLRYVELKHGRICMLAVVGYLVQ--ENGIRLPGDIDYCG--------------TCFACIPNGF-AAL---STICTAGIAQIVAFIGFLE-------GEFPGDFR--------------------EETQFKKRAIELNQGRAAQMGILALMVHEKLG---------- Pleurochrysis_carterae_AB240951 LCLCVAALGFNAP-LPAAIACRCAVRMAFEGEINP---------------------------------GPQGVYDPLGLV-AD----------GDQEKFDRLRYVELKHGRICMLAILGHVVT--SAGVRLPGELCFG---------------LPFACVPTGI-KAL---SVVPAAGLAQIFAFVGFLE------TGEFPGDFR--------------------EEEKACKRGIELNNGRAAQMGILALMVHEMLDN--------- Porphyra_haitanensis_EG017003 ------------------------------------SA-SVPFLPQP-------------PACDGCMAG-DVGFDPLNLC--------------GVVDIKFLREGELKNGRVAMLAFLG-VLVQEF---------------------VHLPA-PQ-FCNPVATEAFFQ----VPAGGLWQIFLACGLVE-------GREPGNFG--FDPLNLYKGT--------PAQKKKLELAEVKNGRLAMIGIGGVIHCNFIY-HQPIVCQL- Porphyra_yezoensis_AU190126_AU187195 ------------------------------------ACKAIPFLEAP-------------EKLDETKAG-YAGFDPLYLC--------------NYLDQDYAAQGELKNGRVAMLACLG-WLVA---------------------EVVHLPNK--QFCNPVALDAIYQ----VPVAGWVQILIAICVVE--------RAAGQLG--FDPLKMDCP--------------TMRLKEVKNGRLAMIGIIGLIFQQLVFHKPTIA-QL- Porphyra_yezoensis_AU193538 ------------------------------------SA-SVPFLPQP-------------DACDGCMAG-DVGFDPLNLC--------------GIVDIKFLREGELKNGRVAMLAFLG-VLVQEF---------------------VHLPC-PL-FCNPVATDAFFQ----VPAGGLWQIFLACGLVE-------GREPGNFG--FDPLNMYKGT--------PAQKKKLELAEVKNGRLAMIGIGGVIHCNFIY-HQPIVCQL- Porphyra_yezoensis_AV437049 ---------------------------------------------------------------LDGWAANAE-FDPLGICD--------------YIPVAYLRECELKHGRICMLACVG-LIVQEV------------------FTWGGC--YFPKIIPPIAAHDHYL-----QTG-MAQLLIFIGAFE-------NRAPGDFN--FDPLNL--GKD-------PCKRAHYEKAEIKNGRLAMIATGGMITTQQVF-HDGTIHMM- Porphyra_yezoensis_AV437085_AV432551 ------------------------------------ACKCVPFWERP-------------ATLDKAYAG-DVGFDPLGFC--------------GAFDLKWLAEAELKHCRIAMLGALG-MIFPEFY---------------------HLPNPA--YAQTNPLAAVPC----VGFAPIAQIVLFMVVLE-------SAAAGDFG--FDPLGLCKNE---------SARKRFALCEVKNGRLAMIGCGGMIHHALITHQGPIC-QI- Porphyra_yezoensis_AV438065 ------------------------------------KCKAIPFMEAP-------------PALDGCMIGDVG-FDPLGFCN--------------YIDLKFLREAEIKHCRVTMLAVLG-LFVQEF------------------YTLPFYC-GGPALAEP--SHNYFV-----TQGAMQQLLLWICGLE-------GRRPGEFG--FDPLNLAKTN---------AAFDKFQNAELVNGRLTMIAIGGLIHQQWMT-HCTPV-QQ- Porphyra_yezoensis_CX874214 ------------------------------------SA-SVPFLPQP-------------DACDGCMAG-DVGFDPLNLC--------------GIVDIKFLREGELKNGRVAMLAFLG-VLVQEF---------------------VHLPC-PL-FCNPVATDAFFQ----VPAGGLWQIFLACGLVE-------GREPGNFG--FDPLNMYKGT--------PAQKKKLELAEVKNGRLAMIGIGGVIHCNFIY-HQPIVCQL- Porphyridium_cruentum_LhcaR1_U58679 ------------------------------------MCKCIPFLEKP-------------KNLDGCMAG-DVGFDPLGFC--------------DKWDVKFLREAELKHGRICMLAALG-FIYPEIMGG------------------KCIPCPEGYFTELNPLKAVKA----IPTAGLLQIVLFVMVLE-------TCAPGDFK--FDPLGLKCP--------------KMELCEVKNGRLAMIAVGGMIHQVLLTKQPILA-QL- Porphyridium_cruentum_LhcaR2_U58680 ------------------------------------KCKAIPFLEAP-------------AKLDGTLVG-DVGFDPLGLC--------------ATLDVKYLRAAELKHGRIAMLAALG-FVVQ---------------------EILAPKQCG-PFTEPDPFLAIYK----VPVEGWYQIIAAICLVE--------AEPGNFG--FDPLGLGKDK---------SVFDKYALCELKNGRLAMIAWTAFAIQQIVTGKGVIK-QL- Prymnesium_parvum_DV097448 -----------ACPVARPALCNVRMCAITPGDIGTT--------------------------------KPLGVYDPLNLMTT------------MPDKYRRWQEMEIKHGRFAMAAVLHVVLT--EAGVRWPGYLCIAE-------------DIKFCDMPGGAIACW---AALPGLAWLQIVLIVALFD----KPE-KAPGDVIP------------------GFCGKEFKLNAERNNGRAAMMGITGMLIHEGLTG--------- Prymnesium_parvum_DV097686 ------------------------------------PCKCMPFLTAP-------------ACQCCGLVGAEAGFDPLYLC--------------DFMDIKWMREAELKHGRICMMATVG-IIAQEL---------------------FCLPG-IA-GYDPNPVTACCT----VAPDVLIQVVGVMAWAE------KCRVPGNVG--FDPLKF--GDNK-------AARERLELAELKNGRLAMLAFCGMIHQVFVTGK-PVLACV- Prymnesium_parvum_DV097739 -----------------------------------------------------------AYG-PGN-NAIGGDFDPAGFLDG-----------KCEVEVNRYRECELTHGRVGMLACLG-FIVQEK---FHPLF---------------SADG---GPAI---DQIPQLP------WGV-MAAGIGLAEAECALRPDYCPGE-LG-FDPLGLAP-TEC-------GELMLMKEKELAHGRLGMIAAAGFLAQEAVTK--------- Prymnesium_parvum_DV098263 -----------YIDVTGKEYQEANVFIPQFDEIGVL--------------------------------PPIGRWDPLKIREQ------------GPERYRRFVEMEIKHGRMAMAAFLGVVTT--YCGMRFPGYLCVAQ-------------DIKFCDIPGGAIACW---AALPCCAWLQIILFITFCE----SPD-KAPGDVVP------------------LFLGKTWKLNAERNNGRAAMMGITGMVVHECLTG--------- Prymnesium_parvum_DV098344 -----------KPVAVKKAAAPKCCTFCTGTEIGVT--------------------------------PPLGLFDPLDFLCR------------GPDVYRRYQEIEIKHGRLAMAATLGVIVT--EAGIRLPGYLCLDQ-------------DLKFADVPGDLGGAY---SCVPLAGWVQIVAFIAALD----DPE-YAPGDVVQ---------------------VKAFKLNVERNNGRAAMFGILGMICHTALGQ--------- Prymnesium_parvum_DV098387 ----------------------------------------------------------DLVCLAPKLNPLVPFYDPLNLA------SMDLWGKGCEATIGWLRHCEIKHGRIAMFAFVG-YCVQANGVHWPWQLT------SAGLCFGDICAAGFPAEQWDALPTAAK----------LQILGAIGLLE---------KPGYFPPLYDPFGLCAGKTA-------EQKARGLVCEINNGRLAMIGIIGFLCACKVPG--------- Prymnesium_parvum_DV098428 ---------------------------------------------------------AKLD-MAG-SGAPLGFFDPLGFCKGA-----------SPETMKKYRECELKHGRVAMLACAG-MITADK---FHPLF-----------------GG---TNCANPLEALTQV----PKLGWLQILTFIMFMEVLNCRRPDYEPGNFLG--------------------ETWECYQTKELNNGRLAMFGCIGMLVGCYITGK-------- Prymnesium_parvum_DV099034 -------------------------------------------------------MCMADKAEGICFETGNKVFDPLG-----------LADLGGEKTLAFLRHAEIKHGRVCMAAFVG-YLVAANGIHFPGLCC------SECLCFEDLCK-LPPLEQWCAMPFLGK----------AQILLLIGIIE---------VPGD-VKYFDPIGLTCKMCA-------EAKEKKRLCEIKNGRLAMLGITCVLIAKEIPG--------- Prymnesium_parvum_DV099196 --------------------------------------------------------SDFCYGLPGA-IEPAGEFDPANMLQG-----------TCKAEVYRWREAELTHGRVGMLACAG-FLVQEN---FHPLF---------------SGDN---GPAI---QQIPQLP------WFV-MTLGIGMAENVQCLKEDYYPGD-LG-FDPLGLAP-DDP-------AEFRTMQEKELTHGRLAMLAAAGFMAQEATTG--------- Prymnesium_parvum_DV099689 --------------------------------------------------------SDFCYGLPGC-IAPIKEFDPFNLLDG-----------KCKEQVMTWREAELTHCRVGMLACAG-FLVQEK---FHPLF---------------SGDG---GPAI---DQIPKLP------WFA-MTLGIGIAEVFQKLKPGYIPGD-LG-FDPLGLKP-EDP-------AEFRAMQTKELQNGRLAMIAAAGFLAQEAVCD--------- Prymnesium_parvum_DV099977 ------------------------------------KCQAIPFLKKPPG-------------LD-GCMVGDIGFDPLRLTDV--------------VPICWAREAELKHARVCMLAFLG-YVAVD--LG---------------FRVP-----GAPEVCCLYAHDAAVDN-----GCMLFMLLPIAVFE------DATAPGDYK--FDP--MNFC--------TEEAKRTMAMKELANGRAAMMAFCG-IVTQC--ALTGGG---- Prymnesium_parvum_DV100100 -----------------------------------------------------------LEAQACKLNPVVGYFDPLKLG------EGEFWGDCNAATIGFLRECEIKHGRVAMAGFVG-YIVHANDIRFPFDKI------ATC---VPTGL--APQA-WDAIPE-AK----------WQIILTIGFFE---------KPGYFPTLFDPFKLCKCACP-------EKKACGLLKEINNGRLAMIGLFGFLCECQVPG--------- Prymnesium_parvum_DV100168 --------------------------------------------------------------LATCLNPVVGFWDPLKLA------EAEFWDNTNEETIGFLRHAEIKHGRVAMAAFVG-YVLQCNGVHFPWAPY------PGFDAAACAAM--SPPEQWDALPYAGK----------LQILLTIGFLE---------KPGYFPDLYDPFKWCKGMCE-------ETKATRLLAELNNGRLAQIGIIAFLCEQKVPG--------- Prymnesium_parvum_DV100215 ------------------------------------YCACIPFLKKP-------------AALDGCMAGDRG-FDPLGFTATI----------DLGGDLNYVREAELMHGRQAMLATVG-FLAPAVFGRLPGG-------------------VYDCVC-LNPLEAQYQ----LPEIVLIQLAVCIAVAE-----SP---PGEHG--FDPMGFIPKFCD------PQKMMLMKEKEIKHCRIAMIAVTGMFFQIAVTG--------- Prymnesium_parvum_DV100460 ------------------------------------YCECLPMLVKRPQ-------------LK-GYIG-DVGFDPVGFCEI--------------LPMDWLREAELKHCRVCMLATVG-FVFTDF------------------LHLPG-----FD-YTTLEAHDACIAC-----GAMCQLLLWIGLLE-------GRAAGDYG--FDPLGFG--D--------PKNMADLQMKELANGRLAMFAFCG-MVTQA--VLTGGT---- Prymnesium_parvum_DV100745 --------------------------DP---IFGGT--------------------------------PEGKIFDPLGFGADE------------ACLYRR-RVVEIKHGRICMVAFLGMTVGPNELITPTHTLLCPCLD-------------LHFDEIPGGVAALE----YVPAAGWFQIICLIGIHE------------DYTK-------------GFKPEDPAVFRNKQLKELKNGRLAMIAVLGEMMAQQVCG--------- Prymnesium_parvum_DV102503 ------------------------------------------------------------------LNPLVGYFNPLGL-------TMCGPGYCCEGVIGYLRHCEIKHGRIAMAAFVG-FIVQCNGIHFPWATC------FCGLTYADIAANAAPAAQWDALPTAAK----------VQILLVIGLLE---------KPGFYPCLFDPFGLCKNACP-------ERKQKGLLAEINNGRLAMIGIMGFMAAACVEG--------- Prymnesium_parvum_DV102563 --------------------SAIKMCCPYEGELGVI--------------------------------DPTGFFDPLGLCTCI-----------SPETFEQYRTAELKHGRVAQLCVIGYIVP--EF-YRFPGEIAPG---------------IAFADIPNG-VAAIN---TIPALGWLQMVFLIGAVD-------G-VLGDFCI-------------------------RKLQELQHGRLAMIATLELLRHDCQNF--------- Prymnesium_parvum_DV103421 ---------------PALRIPACCPMMRAEGEIGVT--------------------------------PPLGVYDPLNLLRT-----------YPRRDYERYVELEIKHGRVAMLATLGVITT--EAGFRWPGYICKCL-------------DLKFCDIPGGALDCY---AAVPALGWLQIVGFVIFLE----PP-GNAPGDIGG---------------------VKKFKLNVERNNGRAAMMGITGMVAHNAVGV--------- Prymnesium_parvum_DV103534 -------------------------------------------------------M-GVECMEGLGPETLGKVFDPLN-----------LCATACDKTLAWYRHAELKHGRVAMAAFVGWLWVNGGAPLFGGAYC------S-GATFECLGH-DC-FAAWDALPTLAK----------AQIFLTIGGLE---------TPGKVT-LGNTLAPCTNLLP-------SAVACKRVCELKNGRLAMIGIMGVIAAHYVPG--------- Prymnesium_parvum_DV103536 ---------------------------------------CMAINDMPGKYA-----------------INGALYDPLGLCNI--------------FDAKWLREAELKHGRLCMLAFAG-YVAVD--LG---------------LKLPD------HAWCCFEAHDKCVGA----GGAMGQILLFACLIE------GDREPGDFG--LDPLGYLTG---------PEQKKDLQIKELKNGRLAMLAFCG-VITQA--GLGHTE---- Pyrocystis_lunula_AF508261 -------------------------LAAFECELG--------------------------------VQDPVGFWDPLGFACDG-----------DVTAFKRRRCVELKHGRICMLATMGYITP--ELTGKWPGDLCPCE-------------GVKFADIPNGLAAIC----KVPALGWAQIVAYCGFCE-----------DDW-K-------------VLTCCDPEERQKKLCAEIANGRLAMVAIIGMFFQDGLTG--------- Pyrocystis_lunula_BQ253990 --------------------------FTPCKQLGAM--------------------------------EPLGFFDPAGFTKVG-----------DEKGFRNLRAAELKHGRVAMMAALGFVAQQ----PCCCRLRERACR-------------LAGGDHGTGHV-----------------------------------------------------LNIFGYDQD-MRAK---ELNNGRFAMVRGHWQ-----SCP--------- Rhodomonas_sp._CS24_Lhcc2_AJ308530 ------------------------------------TMQC-RFCYG---------------GGTEWDQNGAD-WAINGG--LFGA----------VGDIVWAREAEVKHGRICMLAATG-SLVQD--L----------------YTFPFMCKWYKG-EKMWGLHEAAI-----KCGAMWQVLFFVGLLE-------VDGTGDLG--FDPLGLKND---------PETFARRQVTEIKNGRLAMIAIGGMTHHYFLTGK-GPI---E Rhodomonas_sp._CS24_Lhcc3_AJ308530 ------------------------------------TMQC-RFCYG---------------GGTEWDQNGAD-WAINGG--LFGA----------VGDIVWAREAEVKHGRICMLAATG-SLVQD--L----------------YTFPFMCKWYKG-EKMWGLHEAAI-----KCGAMWQVLFFVGLLE-------VDGTGDLG--FDPLGLKND---------PETFARRQVTEIKNGRLAMIAIGGMTHHYFLTGK-GPI---E Rhodomonas_sp._CS24_Lhcc4_AJ308530 ------------------------------------PVMQDRFCYKT---------------TCGYDIQAPY-WAENGG--IFGW----------P-DVIWAREAEVKHGRIAMLAATG-LIVQD--L----------------FTLPFYGKWYTG-EKVWALHDKLV-----SVGAAWQVLLAIGALE-------LDGTGDYG--FDPLCLKCD--------------RRAVTEIKNGRLAMIAFGGMMQHYLLTGK-GPV---Q Skeletonema_costatum_ScfcpA_U66169 IAALIG-SAAFAPA--QTGKATTALN-AFENELGAQ--------------------------------APLGFFDPLGLL-DD----------ADQERFDRLRYVELKHGRICQLAFLGQITT--RAGVRLPGDIDYCG--------------TCFADIGEGW-S---GCLQVPVAGALQILAFVGALE------DNEFVGDFR--------------------EETKLCKRAIELNNGRAAMMGILGLMVHEQL----------- Skeletonema_costatum_ScfcpB_U66171 FAAAIACAAAFAPA--QVGKTTTCLN-AFECELGAQ--------------------------------APLGFWDPLGFL-DR----------ADQETFDRLRYVELKHGRVCQLAFVGNLIT--RAGYHLPGNITPD---------------STFDCYPNGL-AAINGADAIPTLRLIQTLAFIGFLE------D-QFAGDFR--------------------PEWQEQKRAVELNQGRAAMMGILELMVHEQL----------- Skeletonema_costatum_ScfcpC_U66173 -------AAAFAPAK--TGKACTALNAAFDCEIGAA--------------------------------AELGCWDPLGFVTN-----------GDQCRFDRLRCVELKHGRVAMLATWGYATT--WCGARFPGCEDQVA-------------GHQAVFC--------------GPEFLVPVLLTAGFLE----K-EGCFPGDFCA-------------------EQDMIDLRTRELNNGRAAQMGILGMMVHEQL----------- Skeletonema_costatum_ScfcpD_U66174 LATLAAYAAAFAPA--QTGKAPTALN-AFENELGAQ--------------------------------PPLGFFDPLGLL-DE----------AGRG-FDRLRYVEIKHGRICQLAFLGNIIT--RAGVHLPGNIATDG--------------TKFCDVGNGW-A---GCFDVPVDGALQILFFVGFLE------ENEFVGDFR--------------------EEIKRKKRAVELNNGRAAMMGILGLMVHEQL----------- Skeletonema_costatum_ScfcpE_U66175 FPAALPCPAAFPPA--KTGKATTCLN-AFENELGAQ--------------------------------PPLDC-TIFGML-DD----------ADQERFDRLRYVEIKHGRICQLAFLGQITP--RAGYHLPGAIDGAG--------------DCFADFPNGF-AAIGGPDCIPGAGTGQILFFIGALE------E-EFVGDFR--------------------EETKLQKRAVELNNGRAAMMGILGLMVHEQL----------- Skeletonema_costatum_ScfcpF_U66177 IAALIG-SAAFAPA--QNKAATTACN-AFEDELGVQ--------------------------------PPLGFFDLFGLLCGD----------VTQERFDRLRYVEIKHGRIAQLAFLGQVVT--RAGIHLPGNIDYAG--------------NAFDCFPNGV-AALIGPDCIPCRDKGQIIAFIGWLE------TNEHVGDIR--------------------EETKLQKRAIELNNGRAAMFGILGLMVHEEL----------- Thalassiosira_pseudonana_11501 ---------------------------------------------------------WRDEVVVG-ITAPVGFFDPLGLCKGK-----------DDATMAYYREAELKNGRVAMAACLGWYLNAGG---VHPAF------------------N-S-ELCNDPLKAMVEL----PAVGWLQFVLGCGAIEQQIKERPGYVPGDLLG--------------------EGWVMYQNKELNNGRLAMLAIVGMVYQDVFVGD-------- Thalassiosira_pseudonana_12097 -------------------------------------------------------ETQNCFGLPGCVA-PTGYFDPLGFAQDG----------ITLNEIKRNREAEVMHGRVAMLATLG-YFAGEA--LPCP-F---------------GITGP----AN---DQLQQVP------FLL-LTAGIACAETLWKLRDNYYPGD-VG-FDPLGLKP-TDA-------KAFADMQTRELQNGRLAMIGAIGMICQELVNH--------- Thalassiosira_pseudonana_2601 ------------------------------------APRALPFGCAP-------------PTLDGCLVGDVG-FDPIGFCTAP----------NFMTDVQWLREAELTHGRIAQLAVVG-FIWPALFGTFPGNE---------------NFGGADAYCYVNPLEAINH----IPCLAIYQIVGGMAWVE-----GKDRICGDIG--LAYPGG--WNPF-----SPEEYAEKQLQEIKHCRLAMLGAFGLFFQALNCG--------- Thalassiosira_pseudonana_268127 FAATIAAACAFAPA--QVAKTTTCLN-AFEDELGAQ--------------------------------APLGFFDPFGMLCGD----------CTQERFDRLRYVEIKHGRIAQLAFLGQVVT--RAGIHLPGCINYAG--------------DCFDCFPNGV-AALFGPNCIPTAGLVQIICFIGILE------TNEHVGDFR--------------------EETKLCKRAIELNNGRAAMMGILGLMVHEEII---------- Thalassiosira_pseudonana_270092 ----------------------------------------------------------DLKCIAEKCNPVLKFYDPLELC------STTIWDNTNDQTIAFLRHCEIKHGRVAMAAFVG-YIVQCNGIHFPWPMC------FDGTPFPYAAG--SPPEQWDALCDEAK----------WQIILFIGFLE---------VPGAYPKLFDPFGFCEGKCA-------EAKANGLIKELNNGRLAMIGIMGFICEQRVEG--------- Thalassiosira_pseudonana_29375 ------------------------------------MCKAMPFLINP-------------AN-TDGLIG-SNGFDPLGFC--------------DTFDIKWLQECEIKHGRVAMLACAG-FIACQF---------------------VNFPMYCC-MHVDDCNMAPTV----VGICAMLQIVCAAGVEE------ADRTPGDFG--FDPMGQLKGKCE-------AAVNEMKLKEIKNGRLAMLAIGGMIHHNFVT-GEALF---- Thalassiosira_pseudonana_31128 -------------------------------------------------------ECAFAWGLPGAPA-PADGFDPLGFAAN-----------TDLATMKKWREAEAQHGRVAMLAAVG-MLVTEEPIEYHPLF---------------EAYNKDIGPAIRHLDEVRAVC------FEV-LAIVIGTLEGFQDLNDEYYPGD-VG-FDPLGLKP-KDA-------DEFATMATKELQNGRLAMLGAAGMIAQELTNG--------- Thalassiosira_pseudonana_31983 ------------------------------------RCACMPFLPRPIN-------------LD-GCYVGDVGFDPFYLCCIDKNFPP-SWETNGLPTLYWMREAELKHGRVAMLAWTG-WLATDGALGPV------------PLRFPG--AAYQAVPNCLCAHDIMVDQ-----GCLGFMLVAIGIIE------SDRAAGDFK--LDPLQFLKGK-------SDADINTMKLKELQNGRAAMMAFAG-VVTQA--ALGG------ Thalassiosira_pseudonana_32723 -------------------------------------------------------LGATNIQDLPGATAPLKGFDPLN-----------LATLGCECTLAWFRAAELKHCRVAMLATTG-YIVQAAGIHFPG--M------SCDVCFECLCA-MKPLDAWDAVPDLGT----------AQIYFTIFFAE-----------GD-FPVFPPINFACCDAE--------KEKLQMCRELNNGRLAMICIMCFVAAANIPG--------- Thalassiosira_pseudonana_33018 IACCIAAACAFAPV--QVAKTTTCLN-AFECEIGAQ--------------------------------APLGFWDPLGFL-DR----------ADQETFDRLRYVELKHGRIAQLAFVGNLIT--RAGYHLPGDICLG---------------RAFADVPNGI-AAINGPDAICTAALLQTLAFIGFLE------E-QFRGDFR--------------------PEWQTNKRAIELNQGRAAMMGILGLMMHEQVG---------- Thalassiosira_pseudonana_33606 -------------------------------------SACLPFLEAPPN-------------LD-GGVG-DLGFDPFRFCDF--------------VPIDFLREAELKHGRICMMAWLG-FVAVDMGFR-------------VYPAAEG-----FECLTCITAHDAAVEQ-----GGMCQMLLWFCLLE-------GRAPGDFG--LD-GGFLKG--------SQAEIDTMKLKEIVHCRLAMFAFCG-VVTQA--VLTQGP---- Thalassiosira_pseudonana_34276 ------------------------------------MCKCIPFLTVP-------------EKLDGCMAG-DVGFDPMGLCD-------------IQTDLNYARWAELKHGRICMLAVVG-MVWQEYG--------------------PHLPG-DA-YATKDPWEAICC----VGFACNFQTLLAIGVVE------GT--PGDIG--WTGGQLCKMN-D-------AQIKTRMECEIVHCRLAMIAFIGATHQTFLLHK----GLL- Thalassiosira_pseudonana_38122 -----------------------ALCADFCGEIGAA--------------------------------AELGCWDPLNFCT-------------DQACFDKMRYAELKHGRVAQLAAWGYATT--WCGARFPGCEDFPA-------------GHEAVLKI-------------GTENLIPVLVVAGALE----K-EGCFPGDFCA-------------------EADMIDLRTKELNNGRAAMMGILGMIVHEQIDG--------- Thalassiosira_pseudonana_38139 ---------------------------------------------------------MARPVALDGCLAGDVGFDPIGFA-------------KCCADLMNYREAEVKHARLAMLAAAGWPLCEVFDKKIAAAFG-----------------------------------------------------------GADHLPGD-FG-LR-LG-YP-SDC-------AGQQRMQLAEIKNGRLAMIAVFGFAIQEFVCK--------- Thalassiosira_pseudonana_38494 IAC----AAAFAPA--QVGKTCTAIN-AFENELGAQ--------------------------------APLGFFDPLGML-DD----------ADQERFDRLRYVELKHGRICQLAFLGQIVT--RNGIRLPGDIDYCG--------------TCFCDIGEGW-A---GCLQVPVAGALQILAFVGFLE------EGEFVGDFR--------------------EETKLCKRAIELNNGRAAMMGILGLMVHEQLG---------- Thalassiosira_pseudonana_38667 IAACLACAAAFQCA--SPVAKTTALN-AFENELGVQ--------------------------------PPIGFFDPLGLL-DG----------ADQERFDRLRYVEIKHGRIAQLAFLGNIIT--RAGVHLPGNIDYAG--------------NCFDCFPNGW-AAINGPDAITGTGLGQIVAFIGFLE------TNEFVGDFR--------------------DEVKLQKRAIELNNGRAAMMGILGLMMHEQLG---------- Thalassiosira_pseudonana_38879 -------------------------------------------------------NAFCACDLPGA-LPPMGFFDPLGFAEK-----------ADEKTLKRYREAEVTHGRVAMLAVLG-FLVGEAVEGCCFLF-----------------DAQICGPAITHFTQVPDG-------WDALIVTFIGAAEQPGLLKDCYYPGD-IG-FDPLGLKP-EDP-------EELNTMITKELQNGRLAMLAAAGFLAQEAVDG--------- Thalassiosira_pseudonana_39813 -------------------ACTAVNG--FENELGVI--------------------------------APTGFFDPLGLCKDI-----------DQEKFDQYRTAELKHGRVAQLAVIGYIVP--EI-FRWGFDIAPG---------------VACADVPNG-VAAID---AIPALGWAQIIFAIGAVD-------G-WFGNFDI-------------------------RALQELQHGRLAMLAILELLRHDCQNL--------- Thalassiosira_pseudonana_41655 -------------------------------------------------------PFLRRPQFLTGEFAGDVGFDPLGLC-------------SCCEKVLYYREAEIKHARLAMLAAAGWPLCELLDRPLTQQLD----------------------------------------------------------EQQTYRPGD-YN-WDPLNLYP-TDE-------EGQFRMQLAEIKHGRLGMLAITGFAVQEYVFG--------- Thalassiosira_pseudonana_42962 IACCIAAACAFAPA--PVAKCTTAIN-AFENELGAQ--------------------------------PPLGFFDPLGML-DE----------AGQARFDRLRYVELKHGRICQLAFLGNIIT--RAGIHLPGAICLDG--------------TKFCDIGNGW-A---GCFEVPKDGALQILFFVGFLE------EGEFVGDFR--------------------EETKLQKRAIELNNGRAAMMGILGLMVHEQLG---------- Thalassiosira_pseudonana_6139 --------------------------------------------------------SRETVLCEPDTVEFGQKWDPLGLC-----------DLGCDETIAWFRHCEIKHGRVAMAAFVG-WWAVGAGWRLPGELC-------YGLDFACIPC--KGLDAWEAVPGWGK----------VQMLLFAGLIE---------IPGKN--LYDPLGFCKGRCE-------EAKARGRACEIKNGRLAMIGVAGMYAAATIDG--------- Vaucheria_litorea_AF336982 -----------RGNAIKTAACRCCVLRMCCDEIGVT--------------------------------KPLGYWDPLGFCKN------------IDGVDRRWRMVEIKHGRIAMLATIGYIVP--YYFKLFP------------------------EGKPGT--EAL---TTIPQAGLVQIFAFIGALE----SPE-KEPGDIAP---------------------VRTKKLNIELNNGRLAMIAIMGMLVQDCITD--------- Vaucheria_litorea_AF336985 -------------------------------------------------------------------------------------------SLAINPHPQWLQECEIKHGRICMLAFVGTLVIHA-GIHIPNLGY--------------TCDWYNCFPEFVAKN--PLGL--------AQVIAGLTIWE---------KPGHL--NFDLLNLMKGKNE-------SQLKCIQLKEIKNGRLAMVAMAAFACEHFICG--------- ; END; [ The following blocks are output data for analysis step 7725 ] BEGIN TREES; TITLE amino_acids_result; LINK TAXA = TaxaForAnalysisStep7725; TREE Fig._1 = [&R] (((Guillardia_theta_lhc1_AJ821801:0.510422,(Phaeodactylum_tricornutum_16481:0.423397,((Emiliania_huxleyi_EG357978:0.262298,Isochrysis_galbana_ISL00001344:0.266494)100:0.462771,(Phaeodactylum_tricornutum_10243:0.324391,(Thalassiosira_pseudonana_38139:0.294926,(Emiliania_huxleyi_CX772211:1.393388,Thalassiosira_pseudonana_41655:0.422333)47:0.139197)24:0.05628)43:0.068671)66:0.111035)63:0.187429)100:0.657838,(((Phaeodactylum_tricornutum_6062:0.502098,Thalassiosira_pseudonana_2601:0.384866)100:0.534605,(Pavlova_lutheri_PLL00000288:0.366076,(Prymnesium_parvum_DV100215:0.341929,(Emiliania_huxleyi_EG357771:0.134966,Isochrysis_galbana_ISL00000731:0.119964)71:0.113833)94:0.23903)71:0.212912)97:0.203474,((Pavlova_lutheri_PLL00000019:0.826697,Pavlova_lutheri_PLL00000387:0.450373)100:0.568906,((Galdieria_sulphuraria_Lhc3_AJ308253:0.36307,(Porphyridium_cruentum_LhcaR2_U58680:0.376444,(Griffithsia_japonica_AY124024:0.208322,(Chondrus_crispus_CO652608_CO652286:0.156395,Porphyra_yezoensis_AU190126_AU187195:0.390431)89:0.088935)100:0.308191)60:0.148914)24:0.079564,(((Alexandrium_tamarense_CK785040:0.595288,(Phaeodactylum_tricornutum_11006:0.22494,Thalassiosira_pseudonana_29375:0.291684)98:0.290384)95:0.293512,(Pavlova_lutheri_PLL00000398:0.526309,(Prymnesium_parvum_DV097686:0.290063,(Emiliania_huxleyi_CX777336:0.08322,Isochrysis_galbana_DQ118585:0.200946)83:0.079828)100:0.32871)62:0.157064)73:0.201364,(((Guillardia_theta_Lhc4_AJ821808:0.51232,(Phaeodactylum_tricornutum_9799:0.368821,(Cyclotella_cryptica_Fcp_4_AJ005838:0.032469,Thalassiosira_pseudonana_34276:0.079974)97:0.219515)100:0.525827)98:0.279642,(Guillardia_theta_Lhc7_AJ821820:0.49371,((Galdieria_sulphuraria_lhcr5_AJ276862:0.35495,Porphyridium_cruentum_LhcaR1_U58679:0.418093)45:0.068811,(Griffithsia_japonica_Gj446_AF517869:0.396207,Porphyra_yezoensis_AV437085_AV432551:0.355688)72:0.165098)18:0.103802)47:0.068768)26:0.086866,((Galdieria_sulphuraria_Lhcr4_AJ277285:0.299969,(Guillardia_theta_EG72369_EG719821:0.454797,(Guillardia_theta_EG720035:0.308774,((Chondrus_crispus_CO653137:0.154524,Griffithsia_japonica_Gj513_AF517881:0.222525)100:0.344236,(Porphyra_haitanensis_EG017003:0.0,(Porphyra_yezoensis_AU193538:0.0,Porphyra_yezoensis_CX874214:0.0)100:0.047537)100:0.215947)99:0.166028)66:0.043636)82:0.106392)27:0.067467,((Chondrus_crispus_CO652368_CO651192:0.477482,((Galdieria_sulphuraria_lhc1_AJ012759:0.316609,Guillardia_theta_Lhc3_AJ821803:0.315395)43:0.084139,(((Chondrus_crispus_CO649812:0.522692,Porphyra_yezoensis_AV438065:0.279398)94:0.210908,(Cyanidioschyzon_merolae_CMN235C:0.904295,Galdieria_sulphuraria_Lhcr2_AJ277213:0.282307)62:0.099769)73:0.163243,((Guillardia_theta_LHCC4_AF268322:0.699858,Guillardia_theta_Lhc7_AJ821831:0.258542)48:0.089324,((Guillardia_theta_LHCC13_AF268324:0.029416,Rhodomonas_sp._CS24_Lhcc4_AJ308530:0.088128)100:0.344875,(Guillardia_theta_LHCC10_AF268323:0.070187,(Rhodomonas_sp._CS24_Lhcc2_AJ308530:0.0,Rhodomonas_sp._CS24_Lhcc3_AJ308530:0.0)100:0.09205)94:0.15344)100:0.821466)78:0.163959)34:0.158172)16:0.04886)52:0.055095,(Porphyra_yezoensis_AV437049:0.468151,((((Phaeodactylum_tricornutum_17766:0.152325,Thalassiosira_pseudonana_33606:0.261913)100:0.356965,(Emiliania_huxleyi_CX774681:0.18572,(Isochrysis_galbana_DQ118584:0.129582,Prymnesium_parvum_DV100460:0.090337)80:0.07942)99:0.241644)75:0.210086,((Amphidinium_carterae_CF066031_CF067312:0.268361,(Alexandrium_tamarense_CK782611:0.12019,Lingulodinium_polyedrum_CD809947:0.218033)63:0.102768)100:0.419419,(Phaeodactylum_tricornutum_14386:0.543927,((Amphidinium_carterae_CF064709:0.801095,Heterocapsa_triquetra_AY826903:0.141945)83:0.231786,(Amphidinium_carterae_CF065118:0.820785,Heterocapsa_triquetra_AY826901:0.194159)100:0.538039)98:0.372534)100:0.551053)69:0.158269)32:0.042741,((Pavlova_lutheri_PLL00001579:0.536798,(Prymnesium_parvum_DV103536:0.407776,(Emiliania_huxleyi_EG357835:0.156046,Isochrysis_galbana_ISL00001475:0.074949)98:0.386828)60:0.268867)95:0.289899,((Pavlova_lutheri_PLL00000004:0.517756,(Phaeodactylum_tricornutum_23257:0.298788,Thalassiosira_pseudonana_31983:0.188048)100:0.383929)41:0.10202,(Pavlova_lutheri_PLL00003241:1.202821,(Prymnesium_parvum_DV099977:0.489721,((Emiliania_huxleyi_EG030880:0.182275,Isochrysis_galbana_ISL00004541:0.22577)100:0.274399,(Emiliania_huxleyi_EG030976:0.425085,Isochrysis_galbana_DQ118586:0.123511)100:0.300308)32:0.035249)44:0.040985)47:0.067341)58:0.105656)68:0.141773)100:0.472957)91:0.229151)99:0.241974)46:0.15732)15:0.03264)23:0.137524)45:0.110656)65:0.122288)38:0.081617)15:0.077769,(((Pavlova_lutheri_PLL00000092:0.578948,(Vaucheria_litorea_AF336985:0.567666,(Heterocapsa_triquetra_AY826902:0.153979,Lingulodinium_polyedrum_BP743367:0.325823)98:0.380469)75:0.187604)99:0.602782,(((Phaeodactylum_tricornutum_34536:0.207946,Thalassiosira_pseudonana_32723:0.267446)100:0.488503,((Prymnesium_parvum_DV099034:0.206439,(Emiliania_huxleyi_CX774638:0.076319,Isochrysis_galbana_ISL00000652:0.377397)99:0.15265)98:0.223795,(Thalassiosira_pseudonana_6139:0.744952,((Emiliania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ymnesium_parvum_DV098344:0.090327)100:0.287824,((Prymnesium_parvum_DV103421:0.139261,(Emiliania_huxleyi_CX774563:0.129326,Isochrysis_galbana_ISL00000009:0.115729)63:0.053513)100:0.337502,((Isochrysis_galbana_ISL00000011:0.014912,Prymnesium_parvum_DV098263:0.174088)100:0.338719,(Prymnesium_parvum_DV097448:0.064726,(Isochrysis_galbana_DQ118573:0.032598,Isochrysis_galbana_DQ118574:0.457858)61:0.059972)100:0.278336)77:0.171374)60:0.103776)100:0.316181)48:0.118326,((Giraudyopsis_stellifer_Z46920:0.200975,((Laminaria_japonica_Lhcf6_A_DQ250739:0.0,Laminaria_japonica_Lhcf6_B_DQ250739:0.0)98:0.0,(Laminaria_saccharina_Lhcf6_AF226862:0.0,(Laminaria_digitata_CN467240_CN466737:0.0,((Laminaria_saccharina_Lhcf2_AF226858:0.033843,Laminaria_saccharina_Lhcf5_AF226861:0.005201)86:0.010777,(Macrocystis_pyrifera_Pfcpa_U10065:0.030904,(Laminaria_digitata_AW401184_AW401128:0.345549,Macrocystis_pyrifera_Pfcpe_U10069:0.209379)56:0.0)95:0.025337)91:0.005458)91:0.0)91:0.0)100:0.130468)61:0.066348,((Phaeodactylum_tricornutum_16302:0.506291,(Pavlova_lutheri_PLL00000003:0.155339,Pleurochrysis_carterae_AB240951:0.210823)97:0.114146)57:0.062732,(Heterosigma_carterae_Fcp1_X99697:0.279916,((Emiliania_huxleyi_CX775827:0.647652,(Skeletonema_costatum_ScfcpC_U66173:0.046869,Thalassiosira_pseudonana_38122:0.257024)100:0.566721)79:0.092085,(((Cylindrotheca_fusiformis_CffcpB3_AY125590:0.057988,Cylindrotheca_fusiformis_CffcpC_AY125594:0.101075)100:0.175628,(Phaeodactylum_tricornutum_22006:0.223641,((Phaeodactylum_tricornutum_FcpF_Z23153:0.055277,Phaeodactylum_tricornutum_FcpA_Z24768:0.108863)72:0.031079,(Phaeodactylum_tricornutum_30643:0.310371,(Phaeodactylum_tricornutum_Fcp2_X55156:0.005747,Phaeodactylum_tricornutum_FcpC_Z24768:0.011298)100:0.10918)43:0.033468)65:0.039751)74:0.047247)56:0.046062,(((Skeletonema_costatum_ScfcpA_U66169:0.062565,Thalassiosira_pseudonana_38494:0.037853)57:0.007307,((Skeletonema_costatum_ScfcpD_U66174:0.129109,Thalassiosira_pseudonana_42962:0.074376)100:0.085163,(Cyclotella_cryptica_Fcp_1_AJ000670:0.0,(Cyclotella_cryptica_Fcp_2_AJ000545:0.0,Cyclotella_cryptica_Fcp_3_AJ000965:0.006035)92:0.006709)99:0.035864)55:0.029743)79:0.07036,((Skeletonema_costatum_ScfcpE_U66175:0.195089,(Skeletonema_costatum_ScfcpB_U66171:0.098086,Thalassiosira_pseudonana_33018:0.129417)100:0.204111)55:0.020931,((Odontella_sinensis_FcpA_X81054:0.0,Odontella_sinensis_FcpB_X81055:0.0)100:0.130769,(Thalassiosira_pseudonana_38667:0.153391,(Skeletonema_costatum_ScfcpF_U66177:0.120047,(Cyclotella_cryptica_Fcp_5_AJ000967:0.015557,(Cylindrotheca_fusiformis_CffcpA1A_DQ060240:0.195406,Thalassiosira_pseudonana_268127:0.041177)34:0.015748)87:0.071207)99:0.096255)70:0.016124)78:0.026546)67:0.054569)74:0.071235)61:0.098434)89:0.094584)58:0.030197)72:0.074289)100:0.411784)71:0.073311)66:0.099101)29:0.092545)49:0.132118)19:0.029846)54:0.194371)100:0.464344)40:0.018566)97:0.368997)58:0.077769); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr47828] END;