#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on January 11, 2026; 20:05 GMT

TreeBASE (cc) 1994-2008

Study reference:
Lee J.Y., Joseph L., & Edwards S. 2011. A Species Tree for the Australo-Papuan Fairy-wrens
and Allies (Aves: Maluridae). Systematic Biology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S11849]

[ The following blocks are input data for analysis step 7795 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep7795;
        DIMENSIONS NTAX=26;
        TAXLABELS
            Amytornis_ballarae_1a
            Amytornis_barbatus_3a
            Amytornis_dorotheae_2a
            Amytornis_goyderi_1a
            Amytornis_housei_1a
            Amytornis_merrotsyi_1a
            Amytornis_purnelli_1a
            Amytornis_striatus_1a
            Amytornis_textilis_1a
            Clytomias_insignis_1a
            Gerygone_olivacea_1a
            Malurus_alboscapulatus_1a
            Malurus_amabilis_1a
            Malurus_coronatus_1a
            Malurus_cyaneus_2a
            Malurus_cyanocephalus_1a
            Malurus_elegans_1a
            Malurus_grayi_1a
            Malurus_lamberti_1a
            Malurus_leucopterus_1a
            Malurus_melanocephalus_1a
            Malurus_pulcherrimus_1a
            Malurus_splendens_1a
            Stipiturus_malachurus_1a
            Stipiturus_mallee_1a
            Stipiturus_ruficeps_1a
            ;
END;

BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_TRAF6 = [&R] (Gerygone_olivacea_1a:0.015647129000000003,((Amytornis_barbatus_3a:0.008071712500000001,((Amytornis_dorotheae_2a:0.0019434552,Amytornis_striatus_1a:1.068E-7):2.292E-7,(Amytornis_ballarae_1a:0.0019419174000000002,(Amytornis_merrotsyi_1a:0.0059460481,(Amytornis_textilis_1a:0.0039107824999999995,(Amytornis_purnelli_1a:0.0,(Amytornis_goyderi_1a:0.0019453902,Amytornis_housei_1a:0.005950644400000001):0.0019440716):1.126E-7):1.376E-7):1.523E-7):0.0019433583):0.00177781):0.0093805597,((Stipiturus_malachurus_1a:0.0060760509,(Stipiturus_ruficeps_1a:0.0039065461,Stipiturus_mallee_1a:2.542E-7):0.0018835127):0.0070537121,((Malurus_grayi_1a:0.0,Clytomias_insignis_1a:0.0039274071):5.219E-7,(Malurus_cyanocephalus_1a:0.0039171194,(Malurus_amabilis_1a:1.503E-7,(((Malurus_coronatus_1a:0.0058728655,((Malurus_melanocephalus_1a:0.0,Malurus_alboscapulatus_1a:0.0019584059):0.0019468948,Malurus_leucopterus_1a:0.0039053895):1.661E-7):0.0019557151,Malurus_splendens_1a:1.551E-7):0.0019470927,(Malurus_lamberti_1a:0.0,(Malurus_pulcherrimus_1a:0.0,Malurus_elegans_1a:0.0019469345):1.456E-7):4.551E-7):0.0019478649999999998):1.286E-7):0.0058973778):0.002981215):0.0060406386):0.0136929773);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48397]


END;
BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_AL28 = [&R] (Gerygone_olivacea_1a:0.0331043679,(((Stipiturus_mallee_1a:1.739E-7,Stipiturus_malachurus_1a:0.015578867199999999):0.0044587291,Stipiturus_ruficeps_1a:1.833E-7):0.0455238183,(((Malurus_coronatus_1a:0.0111494032,(Malurus_cyanocephalus_1a:0.0154322687,(Malurus_splendens_1a:0.0066010469,((Clytomias_insignis_1a:0.0043770575,Malurus_grayi_1a:0.004350228199999999):0.0181905795,(Malurus_alboscapulatus_1a:0.004362296899999999,Malurus_melanocephalus_1a:0.0044043335):0.0090237508):0.0087222979):1.784E-7):0.0021137418):0.0024723272,(((Malurus_lamberti_1a:1.0E-10,Malurus_pulcherrimus_1a:0.004380485399999999):0.0021848422,(Malurus_elegans_1a:0.0043656225,Malurus_amabilis_1a:0.0021852542):1.782E-7):0.0091537535,Malurus_leucopterus_1a:0.019585593300000002):0.0020781817):0.0079353422,((Amytornis_housei_1a:0.008748837399999999,((Amytornis_striatus_1a:0.0043406058,Amytornis_dorotheae_2a:0.0021933538999999998):0.0065404224,(Amytornis_merrotsyi_1a:0.0244007335,Amytornis_barbatus_3a:0.010900615199999998):1.812E-7):0.0021611134):2.008E-7,(Amytornis_ballarae_1a:0.006606398699999999,((Amytornis_textilis_1a:0.0110238964,Amytornis_purnelli_1a:0.0021777803):3.45E-8,Amytornis_goyderi_1a:0.0021706549):0.0065724132):0.0043508743):0.0210518631):0.0032049168):0.0331043678);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48391]


END;
BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_AL06 = [&R] (Gerygone_olivacea_1a:0.0178992453,((((Stipiturus_mallee_1a:1.0E-10,Stipiturus_ruficeps_1a:8.859999999999999E-8):0.0069396114,Stipiturus_malachurus_1a:0.0049283717999999985):0.0218985599,((Malurus_grayi_1a:0.004741221,Clytomias_insignis_1a:0.0023052653):0.0113420023,(Malurus_cyanocephalus_1a:0.0046861477,(Malurus_leucopterus_1a:0.004620629899999999,((Malurus_coronatus_1a:0.0046273508999999996,((Malurus_pulcherrimus_1a:1.0E-10,(Malurus_lamberti_1a:0.0022977444,(Malurus_elegans_1a:1.0E-10,Malurus_amabilis_1a:0.0022857655):0.002295723):8.49E-8):0.0069858155,Malurus_splendens_1a:0.013979738100000002):0.0023592591):7.73E-8,(Malurus_alboscapulatus_1a:1.0E-10,Malurus_melanocephalus_1a:2.2400000000000002E-7):0.0070266808):9.39E-8):0.0023062763):0.0011520512):0.00877136):1.4E-7,(((Amytornis_merrotsyi_1a:0.009762345399999999,Amytornis_barbatus_3a:0.0024218056):0.0024151562,(Amytornis_dorotheae_2a:0.0024088145,Amytornis_striatus_1a:0.0048377869):0.00240901):9.64E-8,(Amytornis_textilis_1a:0.0074070963,(Amytornis_housei_1a:3.5619999999999997E-7,((Amytornis_goyderi_1a:0.0023409535000000004,Amytornis_purnelli_1a:1.9130000000000003E-7):1.0E-10,Amytornis_ballarae_1a:0.0023487670000000003):0.0023430383):0.0099394623):0.0023275867):0.0050009838):0.0178992452);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48387]


END;
BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_AL23 = [&R] (Gerygone_olivacea_1a:0.03249672675,((((Stipiturus_ruficeps_1a:0.0023155527,Stipiturus_mallee_1a:0.0023104501):0.0072056725,Stipiturus_malachurus_1a:0.004532813699999999):0.0281750375,((Clytomias_insignis_1a:0.013973638399999998,Malurus_grayi_1a:4.7668059999999993E-4):0.0098467042,(((Malurus_lamberti_1a:1.0E-10,(Malurus_pulcherrimus_1a:0.0023600204,Malurus_amabilis_1a:0.0047485903):2.412E-7):0.0023574688,Malurus_elegans_1a:1.713E-7):0.020493498,((Malurus_leucopterus_1a:0.0217218314,((Malurus_melanocephalus_1a:1.0E-10,Malurus_alboscapulatus_1a:1.0E-10):0.0094690665,Malurus_splendens_1a:0.0070501635):1.43E-7):0.013238717,(Malurus_cyanocephalus_1a:0.011783376199999999,Malurus_coronatus_1a:0.010619396199999999):4.104E-7):0.0051358614):0.0077572675):0.0130470702):0.0058719212,(Amytornis_textilis_1a:0.0167262736,((Amytornis_barbatus_3a:0.019362750499999998,(Amytornis_dorotheae_2a:0.0093745239,Amytornis_striatus_1a:0.0023263381):0.0121728289):0.002164923,(Amytornis_merrotsyi_1a:0.011979290500000002,(Amytornis_housei_1a:0.004669857599999998,(Amytornis_goyderi_1a:0.0023278503,(Amytornis_purnelli_1a:1.0E-10,Amytornis_ballarae_1a:6.0E-10):0.0023271519000000003):5.437E-7):0.0047903677):0.0023062087):1.367E-7):0.043852212):0.03249672665);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48389]


END;
BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_MEK1 = [&R] (Gerygone_olivacea_1a:0.0106903394,(Malurus_leucopterus_1a:0.0,((Malurus_alboscapulatus_1a:0.0,Malurus_grayi_1a:6.69E-8):0.0025937583,(((Stipiturus_ruficeps_1a:0.0025894558,(Amytornis_merrotsyi_1a:0.0080125803,(Amytornis_textilis_1a:0.0,(Amytornis_purnelli_1a:0.0,(Amytornis_barbatus_3a:1.731E-7,(Amytornis_ballarae_1a:0.0026399795000000004,((Amytornis_striatus_1a:0.0,Amytornis_dorotheae_2a:3.665E-7):0.005306062,(Amytornis_housei_1a:0.0026528416,Amytornis_goyderi_1a:1.707E-7):0.0026400046):7.77E-8):6.73E-8):1.948E-7):3.354E-7):3.075E-7):0.003314405):1.516E-7,(Clytomias_insignis_1a:0.0,(Stipiturus_mallee_1a:0.0,Stipiturus_malachurus_1a:0.0025919957):3.12E-7):1.8E-7):1.476E-7,((Malurus_cyanocephalus_1a:0.0,(Malurus_lamberti_1a:0.0,(Malurus_pulcherrimus_1a:0.0,(Malurus_elegans_1a:0.0,Malurus_amabilis_1a:0.0026180293):1.641E-7):1.363E-7):0.0025935795999999997):2.04E-7,(Malurus_melanocephalus_1a:0.0,(Malurus_coronatus_1a:0.0,Malurus_splendens_1a:0.0025843841):1.235E-7):6.83E-8):0.0):1.294E-7):0.0):0.013303803400000001);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48393]


END;
BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_HMG_2 = [&R] (Gerygone_olivacea_1a:0.046014955350000004,(((Amytornis_striatus_1a:0.0104648711,Amytornis_dorotheae_2a:0.0020850884):0.0078676919,(Amytornis_barbatus_3a:0.0176896934,(Amytornis_merrotsyi_1a:0.0120442882,((Amytornis_housei_1a:0.006326545299999998,Amytornis_textilis_1a:0.014689133):0.0020157731,(Amytornis_ballarae_1a:0.0020690212,(Amytornis_purnelli_1a:0.0062023691,Amytornis_goyderi_1a:0.010443905):8.92E-8):0.0020796198):0.0025643147):0.0065106285):0.0061448245):0.0191633793,((Stipiturus_malachurus_1a:0.0066741015999999985,(Stipiturus_ruficeps_1a:1.0E-10,Stipiturus_mallee_1a:0.0063148905):0.0039235045):0.0220404075,((Clytomias_insignis_1a:1.0E-10,Malurus_grayi_1a:3.68E-7):0.0020726744,(Malurus_splendens_1a:0.006294393899999999,(Malurus_cyanocephalus_1a:0.0042595192,((Malurus_leucopterus_1a:0.004197028799999999,(Malurus_coronatus_1a:0.006389923,(Malurus_alboscapulatus_1a:0.004230067599999999,Malurus_melanocephalus_1a:0.0020733956000000002):0.0042044129):1.112E-7):0.0021005539,(Malurus_amabilis_1a:1.0E-10,((Malurus_pulcherrimus_1a:1.0E-10,Malurus_elegans_1a:0.0020972794):0.0020922588,Malurus_lamberti_1a:0.0020898636):1.074E-7):0.00209297):0.0020972782):1.316E-7):0.0084664183):0.0042358639):0.0413165638):0.03969932905);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48401]


END;
BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_RI2 = [&R] (Gerygone_olivacea_1a:0.0341865514,(((Stipiturus_ruficeps_1a:0.0169161656,(Stipiturus_malachurus_1a:0.008278404699999999,Stipiturus_mallee_1a:1.41E-7):1.523E-7):0.0229002243,(Malurus_grayi_1a:0.0184856815,(Clytomias_insignis_1a:1.512E-7,(Malurus_cyanocephalus_1a:0.0133008103,(Malurus_coronatus_1a:0.0042982319,(Malurus_splendens_1a:0.004331813699999998,((Malurus_alboscapulatus_1a:1.0E-10,(Malurus_leucopterus_1a:1.0E-10,Malurus_melanocephalus_1a:4.0E-10):1.925E-7):0.0131902741,((Malurus_pulcherrimus_1a:0.0084773759,Malurus_elegans_1a:1.279E-7):0.0042732457,(Malurus_amabilis_1a:0.0042565241,Malurus_lamberti_1a:0.0042553351):1.564E-7):0.0131880625):1.167E-7):0.0087576227):0.0042839096):1.512E-7):0.0261555753):0.0244712644):0.0233781928,(Amytornis_barbatus_3a:0.012150075499999998,((Amytornis_striatus_1a:1.0E-10,Amytornis_dorotheae_2a:0.0041691836):0.0043142643,(Amytornis_goyderi_1a:0.004152835799999999,(Amytornis_textilis_1a:0.008356974599999999,((Amytornis_housei_1a:1.0E-10,Amytornis_merrotsyi_1a:0.0041532641):8.413000000000001E-7,(Amytornis_purnelli_1a:1.0E-10,Amytornis_ballarae_1a:0.0040975453):0.0041257338):1.654E-7):2.09E-7):0.0041148632):0.0048612772):0.0250873986):0.0341865513);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48402]


END;
BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_AB4 = [&R] (Gerygone_olivacea_1a:0.016104280050000003,((Amytornis_dorotheae_2a:1.0E-10,(Amytornis_striatus_1a:0.0101527539,((Amytornis_merrotsyi_1a:0.015716255400000004,Amytornis_barbatus_3a:0.0052001875999999995):0.0050461912,((Amytornis_textilis_1a:0.010214621699999999,Amytornis_housei_1a:0.0050816264999999985):2.179E-7,(Amytornis_purnelli_1a:1.0E-10,(Amytornis_goyderi_1a:1.0E-10,Amytornis_ballarae_1a:6.0E-10):5.0E-10):1.9090000000000002E-7):0.0051111499):2.056E-7):3.959E-7):0.0101136488,(((Stipiturus_ruficeps_1a:1.0E-10,Stipiturus_malachurus_1a:0.015766049700000003):5.917E-7,Stipiturus_mallee_1a:0.0050906719000000005):0.0104953233,(Clytomias_insignis_1a:1.0E-10,(Malurus_grayi_1a:1.0E-10,(Malurus_lamberti_1a:0.0050727301,(Malurus_leucopterus_1a:1.0E-10,(Malurus_pulcherrimus_1a:1.0E-10,(Malurus_amabilis_1a:1.0E-10,((Malurus_coronatus_1a:0.0050751923,(Malurus_elegans_1a:0.0050809759,(Malurus_melanocephalus_1a:1.0E-10,Malurus_alboscapulatus_1a:0.005120326599999999):0.0050814598):2.394E-7):2.048E-7,(Malurus_cyanocephalus_1a:0.0156607417,Malurus_splendens_1a:0.0261537013):0.0050267823):1.75E-7):4.65E-7):8.371E-7):4.2640000000000006E-7):0.0050798205):3.8429999999999997E-7):0.0101837403):0.0168418447):0.01610427995);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48399]


END;
BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_CDC132 = [&R] (Gerygone_olivacea_1a:0.03853369315,((((Stipiturus_mallee_1a:0.0157592188,Stipiturus_ruficeps_1a:0.0028582119):0.0123952382,Stipiturus_malachurus_1a:0.0091043643):0.0331283033,(Malurus_splendens_1a:0.0083567032,((Clytomias_insignis_1a:0.0133048143,Malurus_grayi_1a:0.0026377997):0.0104747639,(Malurus_coronatus_1a:0.0104657804,(Malurus_cyanocephalus_1a:0.024196091700000002,(((Malurus_alboscapulatus_1a:0.0026158595,Malurus_melanocephalus_1a:0.0052398732):0.0135052427,Malurus_leucopterus_1a:0.020686978400000004):0.0089403108,((Malurus_amabilis_1a:0.0104957084,Malurus_lamberti_1a:0.010575280699999998):0.0026284463,(Malurus_pulcherrimus_1a:1.0E-10,Malurus_elegans_1a:0.0025983869):0.0051994627):0.0079101834):0.0026156778):1.597E-7):0.0052186997):0.0025379677):0.0180978761):0.0257871661,((Amytornis_barbatus_3a:0.010004629800000001,(Amytornis_dorotheae_2a:0.0149112084,(Amytornis_textilis_1a:0.0164416405,Amytornis_striatus_1a:0.012300866):0.0046138098):0.004730139):0.0021514537,(Amytornis_merrotsyi_1a:0.0125898084,(Amytornis_goyderi_1a:0.0072792872,((Amytornis_housei_1a:0.009715489499999999,Amytornis_purnelli_1a:0.0024096142):1.502E-7,Amytornis_ballarae_1a:0.0024120680000000003):3.182E-7):0.0071303893):0.0076792803):0.036455866):0.03853369305);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48400]


END;
BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_TGFb2 = [&R] (Gerygone_olivacea_1a:0.0317988336,(((((Stipiturus_mallee_1a:0.001843267,Stipiturus_ruficeps_1a:0.0036924317):0.0094546459,Stipiturus_malachurus_1a:0.0054895062):0.0210617751,((Malurus_cyanocephalus_1a:0.015010126399999999,((Malurus_melanocephalus_1a:0.003700673,Malurus_alboscapulatus_1a:0.0055495859):0.0130103383,(Malurus_coronatus_1a:0.0112259891,((Malurus_lamberti_1a:0.0018552702,(Malurus_pulcherrimus_1a:1.0E-10,Malurus_amabilis_1a:2.0E-10):9.849999999999999E-8):0.0018598269,Malurus_elegans_1a:0.0056489300999999995):0.0018606422):0.0018653011):0.0018472464):6.7E-8,(Malurus_leucopterus_1a:0.0093572389,Malurus_splendens_1a:0.010194844199999999):1.084E-7):0.0077371279):0.0072439356,(Malurus_grayi_1a:0.0037212262000000003,Clytomias_insignis_1a:0.0018459810999999998):0.0061733577):0.0181262479,((Amytornis_striatus_1a:0.0038500743,Amytornis_dorotheae_2a:0.007754014399999999):0.0121807055,(Amytornis_barbatus_3a:0.0197876342,(Amytornis_merrotsyi_1a:0.019051005000000003,(Amytornis_textilis_1a:0.007720474600000001,(Amytornis_housei_1a:0.005753209299999999,(Amytornis_purnelli_1a:1.0E-10,(Amytornis_goyderi_1a:1.0E-10,Amytornis_ballarae_1a:6.0E-10):5.0E-10):0.005758548899999999):8.86E-8):0.0034238795):0.0041058398):0.0050856986):0.0273131397):0.0317988335);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48403]


END;
BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_PTPN12 = [&R] (Gerygone_olivacea_1a:0.01971288675,((((Stipiturus_ruficeps_1a:0.0,Stipiturus_mallee_1a:6.819999999999999E-8):0.0049997934999999995,Stipiturus_malachurus_1a:0.0038817606):0.0079896874,(Clytomias_insignis_1a:0.0062872263000000005,Malurus_grayi_1a:1.5909299999999997E-5):0.004961625):0.0025912823,((Malurus_pulcherrimus_1a:0.001243985,(Malurus_elegans_1a:0.0050336993,(Malurus_lamberti_1a:0.0024996554,Malurus_amabilis_1a:0.0012469967):0.0025266108999999998):7.39E-8):0.0076346919,((Malurus_cyanocephalus_1a:0.0024981187,((Malurus_leucopterus_1a:0.0037775755,Malurus_coronatus_1a:0.0037803124000000002):0.0012462518,(Malurus_splendens_1a:0.0037566912,(Malurus_melanocephalus_1a:0.0024944213,Malurus_alboscapulatus_1a:0.0012460379):0.0025091633):0.0012453579):7.22E-8):0.0012477883,((Amytornis_merrotsyi_1a:0.0037715439,(Amytornis_barbatus_3a:0.0012473077,((Amytornis_housei_1a:0.0037849400999999997,Amytornis_goyderi_1a:0.0050121557):0.0025098226,(Amytornis_purnelli_1a:0.0024858494,Amytornis_ballarae_1a:7.57E-8):0.0051032976):0.0025097382):4.48E-8):0.0012436656,(Amytornis_textilis_1a:0.0037587161,(Amytornis_dorotheae_2a:0.0025081001,Amytornis_striatus_1a:0.0024935039):0.0012458462):4.53E-8):0.0050899736):0.0012581814):1.305E-7):0.01971288675);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48394]


END;
BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_AL16 = [&R] (Gerygone_olivacea_1a:0.03185757005,(((Malurus_grayi_1a:0.010727598500000001,Clytomias_insignis_1a:0.010807023899999999):0.0104840605,(((Stipiturus_mallee_1a:0.0027545795000000002,Stipiturus_ruficeps_1a:0.0027532738):0.0055774877,Stipiturus_malachurus_1a:0.005805940899999999):0.0268902729,((Malurus_cyanocephalus_1a:0.013520234899999999,(Malurus_leucopterus_1a:0.0133602971,(Malurus_coronatus_1a:0.0106821702,((Malurus_melanocephalus_1a:0.0026570101,Malurus_alboscapulatus_1a:0.0053159839):0.013521904000000001,Malurus_splendens_1a:0.0106645376):0.0026616339):1.568E-7):0.0026052437):0.0077350414,(Malurus_lamberti_1a:0.0161203916,(Malurus_amabilis_1a:1.0E-10,(Malurus_pulcherrimus_1a:0.0080181578,Malurus_elegans_1a:0.0079726833):3.806E-7):6.672E-7):0.0057212878):0.0053051462):0.0035711652):0.0264371059,((Amytornis_barbatus_3a:0.0128656857,(Amytornis_dorotheae_2a:1.0E-10,Amytornis_striatus_1a:0.0053293508):0.0041616995):0.0016507962,(Amytornis_merrotsyi_1a:0.0080050205,(Amytornis_textilis_1a:0.005365871899999999,(Amytornis_goyderi_1a:0.0106194023,(Amytornis_housei_1a:0.005367440999999998,(Amytornis_ballarae_1a:1.0E-10,Amytornis_purnelli_1a:0.005292385599999999):0.002637655):0.013356252999999998):0.0026239375):0.0079950166):1.769E-7):0.0267280576):0.03185756995);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48388]


END;
BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_ND2 = [&R] (((Amytornis_barbatus_3a:0.1060042791,((Amytornis_merrotsyi_1a:0.1108507172,Amytornis_striatus_1a:0.0491607356):3.235E-7,(Amytornis_dorotheae_2a:0.038829523500000004,(Amytornis_textilis_1a:0.08435126990000001,(Amytornis_housei_1a:0.0523369658,(Amytornis_goyderi_1a:0.0680946594,(Amytornis_ballarae_1a:0.0630111571,Amytornis_purnelli_1a:0.029824718099999998):0.019071414):0.0097969404):0.0488691592):0.0306276926):0.0048344393):0.021314995):0.0582974215,((Stipiturus_malachurus_1a:0.061992214899999995,(Stipiturus_mallee_1a:0.0177146577,Stipiturus_ruficeps_1a:0.0186102709):0.0382953123):0.0389418538,((((Malurus_splendens_1a:0.06584106329999999,Malurus_cyaneus_2a:0.0406995534):0.0246899518,(Malurus_coronatus_1a:0.130771996,(Malurus_leucopterus_1a:0.055249469100000004,(Malurus_alboscapulatus_1a:0.0344142075,Malurus_melanocephalus_1a:0.0353508073):0.0199318433):0.0381997747):0.0206590786):0.0467970099,(Malurus_cyanocephalus_1a:0.0900462296,(Malurus_pulcherrimus_1a:0.0453941946,(Malurus_elegans_1a:0.0795619061,(Malurus_amabilis_1a:0.019087335599999998,Malurus_lamberti_1a:0.025599801499999998):0.0190221838):0.0106051266):0.1010350372):0.0110204453):0.0573703673,(Clytomias_insignis_1a:0.0786328144,Malurus_grayi_1a:0.12088193059999999):0.0606744101):0.0287600633):0.0763231132):0.1969628787,Gerygone_olivacea_1a:0.1969628787);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48404]


END;
BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_UBN1 = [&R] (Gerygone_olivacea_1a:0.02284228795,((Amytornis_barbatus_3a:0.0173793018,(((Amytornis_housei_1a:0.006609050399999999,Amytornis_goyderi_1a:0.0031942346):0.0032465895,(Amytornis_ballarae_1a:5.045E-7,Amytornis_purnelli_1a:0.0065304913999999995):1.298E-7):0.0048789131,((Amytornis_merrotsyi_1a:0.0032685978,(Amytornis_dorotheae_2a:1.0E-10,Amytornis_striatus_1a:0.0100885336):0.0131198801):0.0098666032,Amytornis_textilis_1a:0.0098912649):0.0014390809):0.0065972234):0.0252135694,(((Stipiturus_mallee_1a:1.0E-10,Stipiturus_ruficeps_1a:0.0030712391):0.0060290325,Stipiturus_malachurus_1a:0.0063262731):0.0181387961,((Malurus_coronatus_1a:0.0128640202,Malurus_grayi_1a:0.0030853606):0.0030603294,(Clytomias_insignis_1a:2.497E-7,((((Malurus_melanocephalus_1a:0.0061929025,Malurus_leucopterus_1a:0.0030798108):2.141E-7,Malurus_alboscapulatus_1a:1.194E-7):0.0030883689,(Malurus_cyanocephalus_1a:0.0157004578,Malurus_splendens_1a:0.006234735399999998):1.654E-7):1.124E-7,(Malurus_lamberti_1a:1.0E-10,(Malurus_pulcherrimus_1a:1.032E-7,(Malurus_amabilis_1a:1.0329999999999999E-7,Malurus_elegans_1a:0.0030815558999999996):1.0E-10):4.991E-7):2.487E-7):0.0030866254):1.392E-7):0.004345556):0.0129227934):0.02284228785);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48398]


END;
BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_TNNT3 = [&R] (Gerygone_olivacea_1a:0.005484523099999999,(((Amytornis_striatus_1a:0.006952832499999999,Amytornis_dorotheae_2a:9.53E-8):0.0034518925,(Amytornis_barbatus_3a:0.0034472258,((Amytornis_textilis_1a:1.0E-10,Amytornis_merrotsyi_1a:0.010636335699999997):2.234E-7,(Amytornis_housei_1a:0.0034558112,((Amytornis_purnelli_1a:1.0E-10,Amytornis_goyderi_1a:0.0176467055):9.98E-8,Amytornis_ballarae_1a:0.0034550636):3.6690000000000004E-7):0.00347986):0.0034518233):4.299E-7):0.0106776724,((Malurus_coronatus_1a:0.0068912656,(Malurus_splendens_1a:0.006790722899999999,((Malurus_alboscapulatus_1a:1.0E-10,(Malurus_melanocephalus_1a:1.0E-10,(Malurus_cyanocephalus_1a:1.0E-10,(Malurus_elegans_1a:1.0E-10,Malurus_amabilis_1a:2.3280000000000002E-7):1.988E-7):2.1739999999999997E-7):3.185E-7):2.5399999999999997E-7,((Malurus_pulcherrimus_1a:0.0032233186,Malurus_lamberti_1a:0.005231044799999999):0.0017707343,Malurus_leucopterus_1a:2.0E-10):2.0E-10):8.97E-8):1.115E-7):0.0155906858,((Clytomias_insignis_1a:0.0036413349,Malurus_grayi_1a:0.006709522599999999):0.0042705115,(Stipiturus_ruficeps_1a:1.0E-10,(Stipiturus_mallee_1a:1.0E-10,Stipiturus_malachurus_1a:4.0E-10):2.0E-10):0.017055464700000005):0.0032070264):0.0135472443):0.005484523);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48396]


END;
BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_AL26 = [&R] (Gerygone_olivacea_1a:0.05513080555,(((Clytomias_insignis_1a:0.0111667789,Malurus_grayi_1a:0.011004446499999999):0.0081672425,(Malurus_cyanocephalus_1a:0.022003475600000003,((Stipiturus_malachurus_1a:0.0108319981,(Stipiturus_ruficeps_1a:1.0E-10,Stipiturus_mallee_1a:0.0026755622):0.0082030901):0.0193151014,((Malurus_pulcherrimus_1a:0.020037036,((Malurus_leucopterus_1a:9.96E-8,(Malurus_melanocephalus_1a:0.0053952513,Malurus_splendens_1a:0.0137599513):0.0054547865):0.0080699524,(Malurus_coronatus_1a:0.0137514155,Malurus_alboscapulatus_1a:0.0058699868):3.165E-7):0.0055061886):0.0026925063,((Malurus_elegans_1a:0.0080704933,Malurus_amabilis_1a:2.0039999999999997E-7):0.0026691621,Malurus_lamberti_1a:0.0027078663):0.0054117600999999994):0.002675071):1.221E-7):0.0027133994):0.0210208061,((Amytornis_textilis_1a:0.021940478000000003,Amytornis_merrotsyi_1a:0.010454010699999999):0.002663999,(Amytornis_barbatus_3a:0.010626183899999999,((Amytornis_dorotheae_2a:0.0184412558,Amytornis_striatus_1a:0.0025057769000000002):0.0131281886,(Amytornis_goyderi_1a:0.005412282599999999,((Amytornis_ballarae_1a:0.0051867859,Amytornis_purnelli_1a:0.005424285599999999):0.0025889818,Amytornis_housei_1a:0.0184016426):0.0025919003):7.54E-8):0.0077250314):0.002734515):0.0324276535):0.05513080545);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48390]


END;
BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_FSHR = [&R] (Gerygone_olivacea_1a:0.0322130837,(((Stipiturus_mallee_1a:1.0E-10,Stipiturus_ruficeps_1a:0.0027052223):0.0054953935,Stipiturus_malachurus_1a:0.0027101863):0.0010046104,((Clytomias_insignis_1a:1.0E-10,Malurus_grayi_1a:0.0053941341):0.0056626068,((Malurus_cyanocephalus_1a:0.011031335599999999,(Malurus_leucopterus_1a:0.0027006598,(Malurus_alboscapulatus_1a:0.0026970272,Malurus_melanocephalus_1a:2.221E-7):2.322E-7):0.0027307153):0.0027746882,(Malurus_coronatus_1a:0.0138100576,(Malurus_splendens_1a:1.0E-10,(((Malurus_elegans_1a:1.0E-10,(Malurus_amabilis_1a:1.0E-10,Malurus_lamberti_1a:0.0027036551999999998):2.96E-7):0.0027048065000000003,Malurus_pulcherrimus_1a:1.42E-7):0.0057681931,(Amytornis_barbatus_3a:0.0026823088000000003,((Amytornis_dorotheae_2a:0.0026786593,Amytornis_striatus_1a:1.2370000000000003E-7):0.0026773299,((Amytornis_ballarae_1a:1.0E-10,Amytornis_merrotsyi_1a:0.0110243628):3.526E-7,(Amytornis_goyderi_1a:0.002694023,(Amytornis_textilis_1a:0.0026794472,(Amytornis_purnelli_1a:0.0026978327,Amytornis_housei_1a:0.0026772181000000003):1.198E-7):1.0E-10):1.467E-7):2.032E-7):0.0081271716):0.039541594699999995):0.0024208567):5.064E-7):0.0026792904):0.0054943983):0.0157695822):0.0322130836);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48392]


END;
BEGIN TREES;
      TITLE Multiple_allele_gene_trees_for_18_loci_across_Maluridae_from_Lee_et_al._2011;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE Full_gene_tree_TEX10 = [&R] (Gerygone_olivacea_1a:0.01046945795,((Amytornis_merrotsyi_1a:0.0055801852,((Amytornis_purnelli_1a:0.0,Amytornis_ballarae_1a:1.526E-7):0.0018494183000000001,(Amytornis_goyderi_1a:0.0018485566,(Amytornis_barbatus_3a:0.0055322862,(Amytornis_textilis_1a:0.0036732939,((Amytornis_striatus_1a:0.0,Amytornis_dorotheae_2a:0.0018417372999999999):0.0037101649,Amytornis_housei_1a:0.0018325312):5.26E-8):7.93E-8):5.41E-8):5.79E-8):0.0018315087):0.0065185063,((Stipiturus_ruficeps_1a:0.0,(Stipiturus_mallee_1a:0.0,Stipiturus_malachurus_1a:0.0018312747):6.23E-8):0.012552231400000002,((Clytomias_insignis_1a:0.0,Malurus_grayi_1a:0.0018358011):0.0018128199000000001,(Malurus_splendens_1a:0.001827484,(Malurus_coronatus_1a:5.37E-8,(Malurus_leucopterus_1a:0.0,(Malurus_alboscapulatus_1a:0.0018327,((Malurus_elegans_1a:0.0018296919,(Malurus_cyanocephalus_1a:0.0,(Malurus_pulcherrimus_1a:0.0,(Malurus_lamberti_1a:0.0018312114999999999,Malurus_amabilis_1a:0.0018320041):5.41E-8):9.84E-8):4.69E-8):0.0018332835,Malurus_melanocephalus_1a:4.58E-8):0.0):4.01E-8):5.23E-8):9.56E-8):0.0037826808):0.0067839532):0.0102259781):0.00864392825);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48395]


END;
[ The following blocks are output data for analysis step 7795 ]
BEGIN TREES;
      TITLE Species_trees_from_single_or_multiple_gene_tree_blocks;
      LINK TAXA = TaxaForAnalysisStep7795;
      TREE MDC_multiple_allele = [&R] (Gerygone_olivacea_1a,(((Amytornis_barbatus_3a,(Amytornis_dorotheae_2a,Amytornis_striatus_1a)),((Amytornis_merrotsyi_1a,Amytornis_textilis_1a),(Amytornis_housei_1a,(Amytornis_goyderi_1a,(Amytornis_ballarae_1a,Amytornis_purnelli_1a))))),((Stipiturus_malachurus_1a,(Stipiturus_mallee_1a,Stipiturus_ruficeps_1a)),((Malurus_grayi_1a,Clytomias_insignis_1a),(Malurus_coronatus_1a,((Malurus_cyanocephalus_1a,(Malurus_lamberti_1a,(Malurus_pulcherrimus_1a,(Malurus_amabilis_1a,Malurus_elegans_1a)))),((Malurus_cyaneus_2a,Malurus_splendens_1a),(Malurus_leucopterus_1a,(Malurus_melanocephalus_1a,Malurus_alboscapulatus_1a)))))))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48432]


END;