#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 08, 2024; 23:32 GMT TreeBASE (cc) 1994-2008 Study reference: Portik D.M., & Papenfuss T. 2011. Monitors cross the Red Sea: The biogeographic history of Varanus yemenensis. Molecular Phylogenetics and Evolution, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11910] [ The following blocks are input data for analysis step 7895 ] BEGIN TAXA; TITLE TaxaForAnalysisStep7895; DIMENSIONS NTAX=19; TAXLABELS Elgaria_panaminta Heloderma_suspectum Lanthanotus_borneensis Shinisaurus_crocodilurus Varanus_albigularis_albigularis_AMB8890 Varanus_albigularis_microstictus_MVZ241418 Varanus_bengalensis_CAS213887 Varanus_bengalensis_MVZ237483 Varanus_exanthematicus_MVZ238934 Varanus_exanthematicus_MVZ238935 Varanus_griseus_MVZ235860 Varanus_griseus_MVZ236611 Varanus_griseus_VGU71334 Varanus_niloticus_MVZ238936 Varanus_niloticus_MVZ245359 Varanus_ornatus_CAS207622 Varanus_salvator_CAS212911 Varanus_yemenensis_MVZ236610 Xenosaurus_grandis ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M10250] TITLE 'RAG-1 Alignment'; LINK TAXA = TaxaForAnalysisStep7895; DIMENSIONS NCHAR=591; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Elgaria_panaminta CGAAAATGTTGGTTTAAACCCCTCCTTTATCAATGAGCCCAATAATTACTTCAATCCTAATCCTCAACCTAGCAACAGGAACTATTATTACCATATCAAGCTACCATTGACTTCTCGCATGAATAGGACTAGAACTAAACACCATAGCAATCTTACCCATTATCTCAAAATCACATCATCCACGATCCACAGAGGCCTCAACAAAATACTTTTTAACACAAGCAGCAGCATCCGCCCTAATCCTGTTTGCCAGCATTACAAATGCCCAAACCACAGGCCAATGAAATATTTTACAACTAGAAAACCCCCTAGCCCAAACACTACTCACAATTGCACTAGCCATAAAACTAGGACTAGCACCGACCCATTTCTGACTGCCAGAAGTATTACAAGGCACATCATTCAAAACCACCCTAATCATCATCACCTGACAAAAACTGGCCCCAATAACACTCATATTACTAACATGGAACCAAACCTCCATACTAACAATTACAATGATAGGAGCCCTATCAGTAGTAATCGGAGGACTCGGCGGACTAAACCAAACGCAACTACGAAAAATCATCGCATTTTCCTCAATCGCCCATC Heloderma_suspectum CGAAAATGTTGGTTCGAAACCCGCTCTTATTAATGAATCCCATAATTATAATAATCTTAATCTTCAGTATTACTACTGGAACCATTATTACCATATCCAGCCAACATTGACTTCTTGCCTGGATGGGGTTAGAACTTAATACACTAGCTGTTATCCCAATCATTTCAAAAAAACACCACCCGCGAGCAACTGAAGCTGCAACTAAATACTTCTTAATTCAAGCCGGTGCCTCAGCCATAATTTTATTTTCCAGTATTATTAATGCATGATTTATAGGACAATGAGATATTCTACAACTATCAGACCCATTAGCTAAAACTCTACTTACAATTGCACTAATAATAAAACTAGGACTAACCCCCCTTCACTTCTGATTCCCTGAAGTTCTTCAAGGATCATCACTTACAACAGCACTAATCTTAGCCACATGACAAAAACTTGCACCAATGACCCTCCTTTATATAACAGCACACCAGATCTCAACAACTATTCTTTTAATTATTGGAACCATATCAACAATTGTAGGCGGCCTAGGCGGACTAAACCAAACACAGCTACGAGAAATAATAGCATTCTCCTCAATTGCCCACT Lanthanotus_borneensis CAAAAATGTTGGTGAAAATCCCTCCCCTGCTAATGAGCCCAACCATTAATCTTATCCTACTTTCAAGCCTGGCAACCGGCACAATCCTTACACTATCCAGCTACCACTGGATATTTGCATGAATCGGCCTAGAACTGAACACACTAGCTATCGTACCAATCATATCAAAAGCCCACCACCCACGGGCAACAGAAGCCGCAACAAAATATTTCCTCGTCCAAGCCGCTGCATCATCAATAGTCCTATTTTCTGCACTAATTAATGCACAATCCACGGGATTGTGGGACATCACACAGCTCTCAAACGAAGCTGCAAAAATCATACTAACAACTGCACTCTCCATAAAACTAGGACTGGTCCCAATACACTTCTGATTACCAGAAGTCCTCCAAGCCATGCCCATTTTAACCATATTAATTATTACAACCTGACAAAAACTTGCCCCAACAACCCTGCTCCTATTAATCTGAGACCAGATTCCCACCTACCCTATTGCCACAATCGGCTGGCTATCCATCCTTATCGGAGGACTTGGCGGCTTAAACCAAACACAGTTACGAAAAATAATAGCCTACTCCTCCATCGCCCACG Shinisaurus_crocodilurus CAAAAATGTTGGTTTAACACCATCCTCTACTAATGAACCCATACATCCTAACACTACTCATGTCCAGCACAGCAACCGGAACCATCATCACAATAACTAGCTACCACTGAATCCTGGCCTGAGTCGGCCTAGAATTAAATACACTCTCAATCACCCCAATTATTGCTAAAATACATCACCCACGAGCAACAGAAGCCGCAACAAAATATTTTCTCACCCAAGCCGCAGCCTCTGCCCTAATCTTGTTTTCAAGTTCAATCAATGCACAACACGCAGGCCTATGGGATATTACACAGCTCACAGATCCACAAGCAAAAATCCTCCTAACTCTAGCTCTTTCAATAAAACTGGGATTAGTTCCCCTACACTTCTGACTACCAGAAGTATTACAAGGCACATCCTTCCCAGTTATACTCATTATTATTACATGACAGAAACTAGCACCCATCACCATCCTCTACCTTACATTTAACCAAATTTCCTCTATCACGTTACTAACAATAAGCACACTATCAATCATCTTAGGAGGACTATGAGGCCTAAACCAAACCCAACTCCGAAAAATTCTAGCATTCTCCTCCATCGCCCACT Varanus_albigularis_albigularis_AMB8890 CGAAAATGTCGGCCACAAACCCTCCTTCACTAATTAAACCGACCATTAACTTTATCCTTCTTTTCAGCATAATTCTCGGAACCATCCTAACAATGACCAGTCACCACTGAATGTTAGCATGACTAGGATTAGAACTAAATACCCTGGCCATTATTCCCATCATCTCAAAAACCCATCATCCACGAGCAACTGAAGCTGCGACAAAGTACTTCTTAATCCAAGCTGCCAGCTCCACACTCATCCTATTCTCCGGAACCACCAATGCATATCTCCACGGAACTTGAGACATTACCCAGCTCTCAGACAATCTATCAAAAATCCTACTAATAACAGGCTTAGCTACCAAACTTGGCCTTGCCCCGATACACTTTTGACTACCAGAAGTAATTCAAGGCGTCCCTATACTCACCGCCCTAATCATCACCACATGACAAAAAATCGCCCCTATAACCCTCCTCATCATAACCTCAAACCTTATTCCAACTCCCATCACCATTGCCTTAGGAATTACATCAACAATTATTGGCGGACTTGGAGGCCTAAACCAAACCCAACTCCGAAAAATAATAGCCTTTTCTTCAATCGCCCACC Varanus_albigularis_microstictus_MVZ241418 ???????????????????????????????????????????????????TTCTTCTTCTCTTCAGCATAATTCTCGGAACCATCCTTACAATGACCAGTCACCACTGAATATTAGCATGACTCGGACTAGAATTAAACACCTTAGCCATTATTCCAATCATCTCAAAAACCCATCACCCACGAGCAACTGAAGCCGCAACAAAATACTTTCTAATCCAAGCTGCTAGCTCCGCACTCATCCTATTCTCCGGAACCACCAATGCATATCTCCACGGGACGTGAGACATCACCCAACTCTCAGACAACCTATCAAAAATCCTACTAATAACAGGCTTAGCCACCAAACTTGGTCTTGCCCCAATACACTTCTGGCTCCCAGAAGTAATTCAAGGCGTCCCCATACTCACTGCTCTCATCATCACTACATGACAAAAAATCGCCCCTATAACCCTCCTCATCATGACCTCAAATCTCATCCCAACTTCCATTACCATCACCCTG{CG}{CG}{CG}ACTGCATCAATAATTATTGGCGGACTTGGAGGCCTAAACCAAATCCAACTCCGAAAAATGATAGCCTTTTCTTCAATCGCCC??? Varanus_bengalensis_CAS213887 CGAAAATGTCGGTTGCAAACCTTCCTTCACTAATCAAACCACTCATCAATTTCACTCTTCTCTCCAGTATAATTGCTGGCACCACCCTAACAATAACCAGTCATCATTGAGTATCAGCCTGACTAGGCCTAGAACTCAACACTCTAGCCATTATTCCAATTATCTCAAAAACCCATCACCCCCGAGCAACTGAAGCCTCAACAAAATACTTTCTAATCCAAGCCGCCAGCTCCGCATTAGTCCTTCTCTCAGGAATCATTAATGCACATCTCTACGGGTCATGAGACATTTCACAACTCTCAAGCGACCTCTCAAAAATCATACTCACAACAGCCTTAGCCACTAAACTAGGACTAGCCCCCATTCATTTCTGACTACCAGAAATCCTTCAAGGAACTCCTATTCTTACAGCGCTCATCATCGCCACATGACAAAAAATTGCCCCAATAGCACTCCTCCTCACAATCTCAGACCTTATCCCAACCTCTATCACTCTCATCTTAGGACTCGTATCAATTATCATCGGAGGCCTAGGCGGCCTAAATCAAACCCAACTTCGAAAAATAATAGCTTTCTCATCAATCGCCCACC Varanus_bengalensis_MVZ237483 ?????????????????????????????????????????CTCATCAATCTCACTCTTCTCTCCAGTATAATTGCTGGCACCACCCTAACAATAACAAGTCACCATTGAGTGTCAGCCTGACTAGGCCTAGAACTCAACACCCTTGCCATTATCCCAATTATCTCAAAAACCCATCACCCCCGAGCAACTGAAGCCTCAACAAAATACTTCCTAATCCAAGCCGCCAGCTCCGCATTAGTCCTTCTCTCAGGAGTCATTAATGCACATCTCTACGGATCATGAGACATTTCACAACTTTCAAGTGACCTCTCAAAAATCATACTCACAGCAGCCCTAGCCACTAAACTAGGGCTAGCCCCTATTCATTTCTGACTACCAGAAATCCTTCAAGGAACTCCTATCTTTACAGCGCTCATCATCGCCACATGACAAAAAATTGCCCCAATAGCACTCTTCCTCACAATCTCAGACCTTATTCCAACCTCCATCACCCTCATCTTAGGACTTGTATCAATTATCATCGGAGGCCTAGGCGGCCTAAATCAAACTCAACTTCGAAAAATAATAGCTTTCTCATCAATCGCCCACC Varanus_exanthematicus_MVZ238934 ???????????????CAAACCTTCCTTCACTAATCAACCCAACCATCAATTTTATTCTCCTCTTCAGCATAATTCTAGGGACTGTCCTAACAATAATCAGTCACCACTGAGTACTGGCATGACTAGGATTAGAACTAAACACCCTAGCCATCATTCCCATTATTTCAAAATCCCACCACCCACGAGCAATTGAAGCTACAACAAAATACTTCTTGATTCAAGCTGCTAGTTCTGCCCTTATTCTATTCTCAGGAATCATCAATGCACACCTTCACGGAACATGAGACATCTCTCAGCTTTCAGACACAACAACTAAAACTCTGCTAATATCCGGCTTAGCCACTAAATTAGGCCTAGCTCCTATACATTTCTGATTACCTGACGTAATTCAAGGCATTCCCATGCTTACAGCCCTAATCATCACCACATGACAAAAAATCGCCCCCATAGCCCTTCTTATTATAACCGCCAACCTTCTTCCAACCTCCATCACCCTCACAATAGGAATTACATCAACAATTATCGGCGGACTTGGCGGCCTAAATCAAACCCAACTTCGAAAAATAATAGCCTATTCCTCAATCGCC???? Varanus_exanthematicus_MVZ238935 ?????????????????????????????????????????????TCAATTTTATTCTCCTCTTCAGCATAATTCTAGGGACTGTCCTAACAATAATCAGTCACCACTGAGTACTGGCATGACTAGGATTAGAACTAAACACCCTAGCCATCATTCCCATTATTTCAAAATCCCACCACCCACGAGCAATTGAAGCTACAACAAAATACTTCTTGATTCAAGCTGCTAGTTCTGCCCTTATTCTATTCTCAGGAATCATCAATGCACACCTTCACGGAACATGAGACATCTCTCAGCTTTCAGACACAACAACTAAAACTCTGCTAATATCCGGCTTAGCCACTAAATTAGGCCTAGCTCCTATACATTTCTGATTACCTGACGTAATTCAAGGCATTCCCATGCTTACAGCCCTAATCATCACCACATGACAAAAAATCGCCCCCATAGCCCTTCTTATTATAACCGCCAACCTTCTTCCAACCTCCATCACCCTCACAATAGGAATTACATCAACAATTATCGGCGGACTTGGCGGCCTAAATCAAACCCAACTTCGAAAAATAATAGCCTATTCCTCAATCGCCCA?? Varanus_griseus_MVZ235860 CGAAAATGTCGGTTACAAACCCTCCCTCACTAATTAACCCCATCATCAACTCCATCTTACTTCTTAGCATAATCACTGGAACCATCCTAACAACAACCAGCCACCACTGAATGATGGCATGACTAGGCTTAGAACTAAACACCCTAGCCATCATTCCCATTATCTCAAAAACCCACCACCCACGAGCAACTGAAGCCTCAACAAAATACTTCTTAATCCAAGCTGCTACCTCCGCACTAATCCTATTCTCTAGCACTATCAACGTACTTCTCTGTGGAACATGAGACATCACACAACTCTCCAACAACCTAGCCAAAATCACACTAACTGTCGCCCTCGCAACCAAACTAGGCCTTGCTCCCATACACTTCTGACTCCCAGAGGTACTCCAAGGAGTGCCAATACTTACAGCACTCATCATTACCACATGGCAGAAAATTGCCCCAATAACACTCCTCATCATAATCTCAAAACTCATCCCCACCCCCATTACCCTAATCATGGGACTTACATCAACAATCGTAGGAGGACTAGCCGGCCTTAACCAAACCCAACTGCGAAAAATAATAGCCTTCTCCTCAATCGCCCACC Varanus_griseus_MVZ236611 CGAAAATGTCGGTTGCAAACCTTCCCTCACTAATTAACCCCATCATCAACTCCATCTTACTTCTTAGCATAATCATTGGAACCATCCTGACAACAACCAGCCACCACTGACTGATAGCATGACTAGGCCTAGAACTAAACACCCTAGCCATCATTCCCATTATCTCAAAAACCCACCACCCACGAGCAACTGAAGCCTCAACAAAATACTTCTTAATCCAAGCTGCCACCTCCGCACTAATCCTATTCTCCAGCACCATCAACGTACTTCTCTGTGGAACATGAGACATCACACAACTCTCCAGCAATCTAGCCAAAATTACACTAACTGTCGCCCTCGCAACCAAACTAGGCCTTGCTCCCATACACTTTTGACTCCCAGAGGTACTCCAGGGAGTACCAATACTTACAGCACTCATCATTACCACATGACAGAAAATTGCCCCAATAGCACTCCTCATCATAATCTCAAAACTCATCCCCACCCCCATTACCCTAATCATGGGACTTACATCAACAATTGTAGGAGGACTAGCCGGCCTTAACCAAACCCAACTACGAAAAATAATAGCCTTCTCCTCAATC??????? Varanus_griseus_VGU71334 CGAAAATGTCGGTTACAAACCTTCCCTCACTAATCAACCCCCTCATTAACTTCACCCTACTTTTCAGCATAATCATCGGAACCGCCCTAACAATAACCAGCCACCACTGAATAATAGCATGATTAGGCCTAGAATTAAACACCCTGGCCATCATTCCTATCATCTCAAAAACCCACCACCCACGAGCAACTGAAGCCTCAACAAAATACTTCCTAATCCAAGCCGCTACCTCCGCACTAATCCTATTTTCCAGCACTATCAATGCACTCTTCCACGGAACATGAGACATTACACAACTCTCAGACAGTCTGGCCAAAATTATGCTAACTATCGCCCTCGCCACTAAACTAGGCCTCGCCCCCATACACTTCTGACTCCCAGAAGTACTTCAAGGAGTACCAATACTCACAGCACTTATCATTACCACCTGACAAAAAATCGCCCCAATATCACTCCTCATCATAACCTCAAAACTCATCCCCACCCCCATCACCCTCACCATAGGACTTACATCAACAATCGTGGGGGGATTAGCCGGCCTCAACCAGACCCAGCTTCGAAAAATAATAGCCTTCTCCTCAATCGCCCACC Varanus_niloticus_MVZ238936 CGAAAATGTTGGTCACAGACCTTCCTCCACTAATCAA{AC}CCAATCACTAACTTTATCCTACTTTCCAGCATAATCTTCGGAACTATCCTAACAATAGCCAGCCATCACTGAATGCTAGCGTGACTTGGCCTGGAACTAAACACCCTAGCCATTATCCCCATTATCTCAAAAACCCACCACCCACGAGCAACCGAAGCCTCAACAAAATACTTCCTAATCCAAGCTGCCAGTTCTTCACTAATCTTATTCTCCGGAATCTCCAATGCATACCTCCACGGAACATGAGATATTACCCAACTCTCAAGCAACCTAGCTAAAATTACACTAACAACAGCCTTAGCAACTAAACTAGGCGTAGCCCCTGTACACTTCTGACTACCAGAAGTACTTCAAGGGGTACCGATACTATCAGCAATCATTATCACC{AC}CCTGACAAAAAATCGCCCCAATAGCACTCCTTATCATAACCTCAAACCTCATCCCAACCCAAATCACCCTAACCATTGGAATTACATCAACAATCATCGGAGGACTAGCCGGCCTAAACCAAACCCAACTCCGAAAGAAAATAGCCTTCTCCTCA?????????? Varanus_niloticus_MVZ245359 CGAAAATGTTGGTCACAAACCCTCCTTCACTAATCAAACCAATCATTAACTTTATCCTACTTTCCAGCATAATCTTCGGAACTATCTTAACAATAACCAGCCACCATTGAATGCTCGCATGACTTGGCCTGGAACTAAACACCCTAGGCATTATCCCTATTATTTCAAAAACCCACCACCCCCGAGCAACTGAAGCCTCAACAAAATATTTCCTAATCCAAGCTGCTACCTCCTCACTAATCTTATTCTCTGGAATTTCCAACGCATGCCTCCACGGAACATGAGACATCACCCAGCTCTCAAGTAACCTAGCTAAAACCACACTAACAACAGCCTTAGCCACTAAACTAGGCCTAGCCCCAGTACACTTCTGATTACCAGAAGTACTTCAAGGCGTACCAGTACTGTCAGCAATTATTATCATCACCTGACAAAAAATCGCCCCAATAACACTTTTTATTATAACCTCAAACCTAATTCCAACCCCAATCACCCTAACCATTGGACTCACATCAACAATTGTTGGAGGACTAGCCGGTCTAAACCAAACTCAACTTCGAAAAGTAATAGCCTTCTCTTCAATC??????? Varanus_ornatus_CAS207622 CGAAAATGTTGGTCACAGACCTTCCT{CT}CACTAATCAA{AC}CCAATCATTAACTTTATCCTACTTTCCAGCATAATCTCTGGAACTATCCTAACAATAGCCAGCCACCACTGAATGCTCGCATGACTTGGCCTGGAACTAAACACCCTAGCTATTATTTCCCT{CT}ATCTCAAAAACTCACCACCCCCGAGCAACCGAAGCCTCAACAAAATACTTCCTAAT{CT}CAAGCTGCTAGTTCTTCACTAATCCTATTCTCCGGAATCTTTAACGCACACCTCCACGGAACATGAGACATTACCCAACTCTCAAGCAACCTAGCTAAAATTACACTGACAACAGCCTTAGCCACTAAATTAGGCCTAGCCCCTGTACACTTCTGATTACCAGAAGTGCTTCAAGGAGTACCATTACTATCAGCAATCATTATCACCACCTGACAAAAAATCGCCCCAATAACACTCTTTATCATAACCTCAAACCTCATCCCAACCCAAATCACCCTAGCCATGGGAATCACATCAACAATTATTGGAGGACTGGCCGGCCTAAACCAAACCCAACTCC{AG}AAAAATAATAGCCTTCTCTTCAATCGCCCACC Varanus_salvator_CAS212911 ????????????????????????????????????????????????????????????????CAGCATAATCGCTGGAACCATCCTAACAATAACAAGCCACCACTGAGTATCAGCCTGACTGGGCCTAGAATTAAATACCCTAGCTATCATCCCCATTATTTCAAAAACCCATCACCCCCGAGCAACTAAAGCCTCAACAAAATATTTCCTCATTCAAGCCACTAGTTCCGCACTAGTCCTTCTTTCAGGAATTATCAACGCCCACCTTCACGGATCATGAGACATTTCTCAACTCTCAAATGACTTCACCAAAATCACACTCACAACAGCCCTAGCCACCAAGCTAGGACTGGCCCCAGTCCACTTCTGACTGCCAGAAATCCTCCAAGGAGTACCAACCATCACAGCACTCATCATTGCCACATGACAAAAAATCGCCCCAATAGCACTCCTTATCGCAATCTGAAACCTAATCCCAACCACCATCACCCTCACAATAGGACTCCTATCAACCATCATCGGAGGACTAGGAGGTCTAAATCAAACCCAGCTCCGAAAAATAATAGCCTTCTCCTCAATCGCCCACC Varanus_yemenensis_MVZ236610 ?????????????CACAAACCCTCCTTCACTAATTAACCCGACTGTCAACTTCATCCTTCTTTTCAGCATAATTCTCGGAACCATCCTAACAATGACCAGTCACCACTGAATACTAGCATGACTCGGACTAGAACTAAACACCTTAGCCATTATTCCAATCATTTCAAAAACCCATCACCCACGAGCAACTGAAGCCGCAACAAAATACTTCCTAATCCAAGCTGCTAGCTCCACACTCATTCTATTCTCCGGAACCACCAATGCATGCCTCTGCGGGACATGAGACATCACCCAACTCTCAGACAACCTATCAAAAATCCTACTAATAACAGGCTTAGCCGCCAAACTTGGTCTCGCCCCAATACACTTCTGGCTCCCAGAAGTAATTCAAGGAGTCCCTATACTTACTGCCCTCATCATTACTACATGACAGAAAATCGCCCCTATAACCCTCCTCATCATGACCTCAAATCTTATCCCAACTTCCACTACCATCACCCTAGGAATTGCATCAATAATTATTGGCGGACTTGGAGGCCTAAACCAAACCCAACTCCGAAAAATAATAGCCTTTTCTTCAATCG?????? Xenosaurus_grandis CGAAAATGTTGGTTTAAACCCCTCCCATACTAATGAGCCCAACTACCCAATCCCTCCTCCTCTCCAACATTGCTATTGGCACCATTATTACAATATCAAGCCACCACTGACTACTAGCGTGAATGGGATTAGAACTAAACACCCTAGCAATACTTCCCATTATTTCAGCTACCCACCACCCGCGAGCCACAGAAGCTTCTACAAAGTACTTCCTCACACAAGCTGCTGCCTCCTCATTAATTCTGTTCGCAAGTATCTTAAATGCCCAACCCTCAGGACAATGAGACATTATACAACTATCAGACCCCTTAGCTAAAGTGCTATTCACCATAGCCCTTGCCATAAAACTGGGCCTCTCCCCAACCCACTTCTGATTGCCAGAAGTACTTCAGGGCTCCCCCCTTAAAACCTCACTAATCATTGTTACTTGACAAAAACTAGCACCAATAACACTTCTCTATCTCACATACAATCAAACCTCAACACCAACCCTAATTACAATTGGCATCATCTCCGTACTAGTTGGGGGGTTAGGGGGCCTAAACCAGACACAACTGCGAAAAATATTAGCCTTCTCCTCAATTTCACATC ; END; [ The following blocks are output data for analysis step 7895 ] BEGIN TREES; TITLE Consensus_from_RAG1; LINK TAXA = TaxaForAnalysisStep7895; TREE TREE1 = [&R] ((Varanus_albigularis_albigularis_AMB8890:0.011366500000000002,(((Varanus_ornatus_CAS207622:0.003350999999999993,(Varanus_niloticus_MVZ245359:0.004826999999999998,Varanus_niloticus_MVZ238936:0.0010269999999999724):0.00262900000000002):0.010564999999999991,((((Shinisaurus_crocodilurus:0.036210500000000034,((Heloderma_suspectum:0.07076250000000002,Elgaria_panaminta:0.062414500000000026):0.013724,Xenosaurus_grandis:0.05197050000000006):0.020101500000000008):0.07608749999999996,Lanthanotus_borneensis:0.029563000000000006):0.05639350000000004,(Varanus_salvator_CAS212911:0.01317299999999999,(Varanus_bengalensis_MVZ237483:0.014581999999999984,Varanus_bengalensis_CAS213887:0.010853999999999975):0.008075500000000013):0.004283000000000037):0.00534599999999999,(Varanus_griseus_MVZ236611:0.004092499999999999,Varanus_griseus_MVZ235860:0.005619999999999958):0.016592500000000038):0.009432499999999983):0.014921500000000032,(Varanus_exanthematicus_MVZ238934:0.003925999999999985,Varanus_exanthematicus_MVZ238935:0.002614499999999964):0.012010500000000035):0.008147999999999989):0.005367999999999984,Varanus_albigularis_microstictus_MVZ241418:0.00578799999999996,Varanus_yemenensis_MVZ236610:0.010037999999999991); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48624] END; BEGIN TREES; TITLE Consensus_from_RAG1; LINK TAXA = TaxaForAnalysisStep7895; TREE TREE1 = [&R] ((Varanus_albigularis_albigularis_AMB8890:0.011366500000000002,(((Varanus_ornatus_CAS207622:0.003350999999999993,(Varanus_niloticus_MVZ245359:0.004826999999999998,Varanus_niloticus_MVZ238936:0.0010269999999999724):0.00262900000000002):0.010564999999999991,((((Shinisaurus_crocodilurus:0.036210500000000034,((Heloderma_suspectum:0.07076250000000002,Elgaria_panaminta:0.062414500000000026):0.013724,Xenosaurus_grandis:0.05197050000000006):0.020101500000000008):0.07608749999999996,Lanthanotus_borneensis:0.029563000000000006):0.05639350000000004,(Varanus_salvator_CAS212911:0.01317299999999999,(Varanus_bengalensis_MVZ237483:0.014581999999999984,Varanus_bengalensis_CAS213887:0.010853999999999975):0.008075500000000013):0.004283000000000037):0.00534599999999999,(Varanus_griseus_MVZ236611:0.004092499999999999,Varanus_griseus_MVZ235860:0.005619999999999958):0.016592500000000038):0.009432499999999983):0.014921500000000032,(Varanus_exanthematicus_MVZ238934:0.003925999999999985,Varanus_exanthematicus_MVZ238935:0.002614499999999964):0.012010500000000035):0.008147999999999989):0.005367999999999984,Varanus_albigularis_microstictus_MVZ241418:0.00578799999999996,Varanus_yemenensis_MVZ236610:0.010037999999999991); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48624] END; BEGIN TREES; TITLE Consensus_from_RAG1; LINK TAXA = TaxaForAnalysisStep7895; TREE TREE1 = [&R] ((Varanus_albigularis_albigularis_AMB8890:0.011366500000000002,(((Varanus_ornatus_CAS207622:0.003350999999999993,(Varanus_niloticus_MVZ245359:0.004826999999999998,Varanus_niloticus_MVZ238936:0.0010269999999999724):0.00262900000000002):0.010564999999999991,((((Shinisaurus_crocodilurus:0.036210500000000034,((Heloderma_suspectum:0.07076250000000002,Elgaria_panaminta:0.062414500000000026):0.013724,Xenosaurus_grandis:0.05197050000000006):0.020101500000000008):0.07608749999999996,Lanthanotus_borneensis:0.029563000000000006):0.05639350000000004,(Varanus_salvator_CAS212911:0.01317299999999999,(Varanus_bengalensis_MVZ237483:0.014581999999999984,Varanus_bengalensis_CAS213887:0.010853999999999975):0.008075500000000013):0.004283000000000037):0.00534599999999999,(Varanus_griseus_MVZ236611:0.004092499999999999,Varanus_griseus_MVZ235860:0.005619999999999958):0.016592500000000038):0.009432499999999983):0.014921500000000032,(Varanus_exanthematicus_MVZ238934:0.003925999999999985,Varanus_exanthematicus_MVZ238935:0.002614499999999964):0.012010500000000035):0.008147999999999989):0.005367999999999984,Varanus_albigularis_microstictus_MVZ241418:0.00578799999999996,Varanus_yemenensis_MVZ236610:0.010037999999999991); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48624] END;