#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 22, 2024; 12:22 GMT

TreeBASE (cc) 1994-2008

Study reference:
Kurkela T., & Hanso M. 1999. Differentiating characteristics between Melampsoridium
rusts infecting birch and alder leaves. Mycologia, 91(6): 987-992.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S558]

[ The following blocks are input data for analysis step 794 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep794;
        DIMENSIONS NTAX=9;
        TAXLABELS
            Chrysomyxa_arctostaphyli
            Cronartium_comandrae
            Cronartium_flaccidum
            Heterobasidion_annosum
            Melampsora_medusae
            Melampsora_occidentalis
            Melampsoridium
            Puccinia_thlaspeos
            Pucciniastrum_goeppertianum
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2159]

	TITLE ITS;
	LINK TAXA = TaxaForAnalysisStep794;
	DIMENSIONS NCHAR=159;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                       10        20        30        40        50        60        70        80        90        100       110       120       130       140       150         ]
[                                        .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         ]
Chrysomyxa_arctostaphyli        -TAACTTTTAACAATGGATCTCTTGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCAAATCTTTGAACGCACCTTGCACCTTTTGGATATTCCGAAAG-TACACCTGTTTGAGTGTCATG
Cronartium_comandrae            -TAACTTTTAACAATGGATCTCTTGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGT-ATTCCAAAAGGTACACCTGTTTGAGTGTCATG
Cronartium_flaccidum            -TAACTTTTAACAATGGATCTCTTGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCAAATCTTTGAACGCACCTTGCACCTTTTGGT-ATTCCAAAAGGTACACCTGTTTGAGTGTCATG
Heterobasidion_annosum          ACAACTTTCAACAATGGATCTCTCGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGT-ATTCCGAAGGCACGCCTGTTTGAG-TGTCGTG
Melampsora_medusae              -TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACTTTGCACCTTTTGGTTATTCCGAGAGGTACGCCTGTTTGAATGTCACG
Melampsora_occidentalis         -TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGTGAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCTTTGAACGCACTTTGCACCTTTTGGTTATTCCGAGAGGTACGCCTGTTTGAATGTCACG
Melampsoridium                  -TAACTTTTAACAATGGATCTCTTGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGT-ATTCCAAAAGGTACACCTGTTTGAGTGTCATG
Puccinia_thlaspeos              -TAACTTTTAACAATGGATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGT-ATTCCAAAAGGTACACCTGTTTGAGTGTCATG
Pucciniastrum_goeppertianum     -TAACTTTTAACAATGGATCTCTTGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCTTTTGGT-ACTCCAAAAGGTACACCTGTTTGAGTGTCATG
;
END;

[ The following blocks are output data for analysis step 794 ]
BEGIN TREES;
      TITLE Tb5571;
      LINK TAXA = TaxaForAnalysisStep794;
      TREE Fig._6 = [&R] ((((((Melampsoridium,Cronartium_comandrae),Pucciniastrum_goeppertianum),(Cronartium_flaccidum,Chrysomyxa_arctostaphyli)),Puccinia_thlaspeos),(Melampsora_medusae,Melampsora_occidentalis))Uredinales,Heterobasidion_annosum);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3461]


END;