#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 06, 2024; 13:36 GMT

TreeBASE (cc) 1994-2008

Study reference:
Meeboon J., Hidayat I.-., Kramadibrata K., Nurcahyanto D., Siahaan S.A., & Takamatsu
S. 2011. Cystotheca tjibodensis (Erysiphaceae, Ascomycota): Ninety years rediscovery
in Java and first finding of anamorph. Mycoscience, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S11971]

[ The following blocks are input data for analysis step 7998 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep7998;
        DIMENSIONS NTAX=8;
        TAXLABELS
            Cystotheca_lanestris_ex_Myrica_californica_AF011288_USA
            Cystotheca_lanestris_ex_Quercus_agrifolia_AB000933_USA
            Cystotheca_lanestris_ex_Quercus_agrifolia_AF011289_USA
            Cystotheca_lanestris_ex_Quercus_sp._AF073354_KOR
            Cystotheca_tjibodensis_ex_Castanopsis_argentea_A
            Cystotheca_tjibodensis_ex_Castanopsis_argentea_T
            Cystotheca_wrightii_ex_Quercus_glauca_AB000932_JPN
            Sawadaea_nankinensis
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M10430]

	TITLE Cystotheca_tjibodensis;
	LINK TAXA = TaxaForAnalysisStep7998;
	DIMENSIONS NCHAR=488;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                                   10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480        ]
[                                                                    .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .        ]
Cystotheca_lanestris_ex_Myrica_californica_AF011288_USA     ---------------CGCTGGGCGCCTGGCGCCGGGCGTGGCTGACCCTCCACCCGTGTCTA-TCTTCTCATGTTGCTTTGGCGGGCCGGGCCGCGTGCCCTCCTGGCACCTGCTGGGACGTGCCCGCCAGAGCCCCCTTAACGCGTGCTGTTTGTGTGGTCAGAGTGGTAGCAAAATTAGAATAAAACTTTCAACAACGGATCTCTTGGCTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCCGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCAGTACAACCCCTCAAGCCTAGCTTGGTCTTGGGGCGCGCCCTGAGGGGCAGCCCTTAAATGCAGTGGCGGTGCCGTCCGGCTCTACGCGTAGTTATTTCTCTCGCGACAGGGTGGTGACGGGACCTGCCAGAATACCCATCTTAACAGG
Cystotheca_lanestris_ex_Quercus_agrifolia_AB000933_USA      CTGAGCGTGAGGCCACGCTGGGCGCCTGGCGCCGGGCGTGGCTGACCCTCCACCCGTGTCTA-TCTTCTCATGTTGCTTTGGCGGGCCGGGCCGCGTGCCCTCCTGGCACCTGCTGGGACGTGCCCGCCAGAGCCCCCTTAACGCGTGCTGTTTGTGTGGTCAGAGTGGTAGCAAAATTAGAATAAAACTTTCAACAACGGATCTCTTGGCTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCCGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCAGTACAACCCCTCAAGCCTAGCTTGGTCTTGGGGCGCGCCCTGAGGGGCAGCCCTTAAATGCAGTGGCGGTGCCGTCCGGCTCTACGCGTAGTTATTTCTCTCGCGACAGAGTGGTGACGGGACCTGCCAGAATACCCATCTTAACAGG
Cystotheca_lanestris_ex_Quercus_agrifolia_AF011289_USA      ------------GCACGCTGGGCGCCTGGCGCCGGGCGTGGCTGACCCTCCACCCGTGTCTA-TCTTCTCATGTTGCTTTGGCGGGCCGGGCCGCGTGCCCTCCTGGCACCTGCTGGGACGTGCCCGCCAGAGCCCCCTTAACGCGTGCTGTTTGTGTGGTCAGAGTGGTAGCAAAATTAGAATAAAACTTTCAACAACGGATCTCTTGGCTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCCGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCAGTACAACCCCTCAAGCCTAGCTTGGTCTTGGGGCGCGCCCTGAGGGGCAGCCCTTAAATGCAGTGGCGGTGCCGTCCGGCTCTACGCGTAGTTATTTCTCTCGCGACAGGGTGGTGACGGGACCTGCCAGAATACCCATCTTAACAGG
Cystotheca_lanestris_ex_Quercus_sp._AF073354_KOR            CTGAGCGTGAAGCCACGCTGGGCGCCTGGCGCCGGGCGTGGCTGACCCTCCACCCGTGTCTA-TCTTCTCATGTTGCTTTGGCGGGCCGGGCCTTGCGCCCTCCTGGCACCTGCTGGGACGTGCCCGCCAGAGCCCCCTTAACGCGTGCTGTTTGTGTGGTCAGAGTGGTAGCAGAATTAGAATAAAACTTTCAACAACGGATCTCTTGGCTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCCGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCAGTACAACCCCTCAAGCCTAGCTTGGTCTTGGGGCGCGCCCTATGGGGCAGCCCTTAAATGCAGTGGCGGTGCCGTCCGGCTCTACGCGTAGTTATTTCTCTCGCGACAGAGTGGTGACGGGACCTGCCAGAACACCCATTCTAACAGG
Cystotheca_tjibodensis_ex_Castanopsis_argentea_A            -------------------------------------------------CCACCCGTGTCTA-TCTTCTCATGTTGCTTTGGCGGGCCGGGCCTCGTGCCCTCCCGGCGTCGGCTGGGACGCGCCCGCCAGAGCCCCCCTAACGCGTGCTGTTTGTGTGGTCAGAGTGGTAGCAGAATTAGAATAAAACTTTCAACAACGGATCTCTTGGCTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCCGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCAGTACAACCCCTCAAGCGTAGCTTGGTCTTGGGGCGCGCCCCGCGGGGCGGCCCTTAAATGCAGTGGCGGTGCCGTTGGGCTCTACGCGTAGTTATTTCTCTCGCGACAGGGTGGTGACGGGACTTGCCAAAAGGCTCATCTCATTCGG
Cystotheca_tjibodensis_ex_Castanopsis_argentea_T            ---GACGTGAGGCCACGCTGGGCGCCTGGCGCCTGGCGGGGCTGACCCTCCACCCGTGTCTA-TCTTCTCATGTTGCTTTGGCGGGCCGGGCCTCGTGCCCTCCCGGCGTCGGCTGGGACGCGCCCGCCAGAGCCCCCCTAACGCGTGCTGTTTGTGTGGTCAGAGTGGTAGCAGAATTAGAATAAAACTTTCAACAACGGATCTCTTGGCTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCCGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCAGTACAACCCCTCAAGCGTAGCTTGGTCTTGGGGCGCGCCCCGCGGGGCGGCCCTTAAATGCAGTGGCGGTGCCGTTGGGCTCTACGCGTAGTTATTTCTCTCGCG-------------------------------------------
Cystotheca_wrightii_ex_Quercus_glauca_AB000932_JPN          CTGAGCGTGAGGCCACGCTGGGCGCCTGGCGCCAGGCGTGGCTGACCCTCCACCCGTGTCTA-TCTTCTCATGTTGCTTTGGCGGGCCGGGCCCTGTGCCCTCCCGGCGCCTGCTGGGACGCGCCCGCCAGAGCCACCCTAACGCGTGCTGTTTGTGTGGTCAGAGTGGTAGCAGAATTAGAATAAAACTTTCAACAACGGATCTCTTGGCTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCCGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCAGTACAACCCCTCAAGCCTGGCTTGGTCTTGGAGCGCGCCCCGCGGGGCGGCTCTTAAATGCAGTGGCGGTGCCGTCGGGCTCTACGCGTAGTTATTTCTCTCGCGACAGGGTGGTGACGGGACCTGCCAGAAGCCTCATCATACTAGG
Sawadaea_nankinensis                                        CTGAGCGTGA-GCCACGCAGGGCGC---AAGCCCCGCGCGGCCGACCCTCCACCCGTGCCGACTCATATCCGGTTGCCCTGGCGG--------------CCTGCCGGCCCCGGCTGGCA-GTGCCCGCGAGAGGCGCCCCAACTCGTGCTGTCAGTGATGTCTGAGTCGCAGTTAA--TAAAGTAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCCGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATAACAACCCCTCAAGCCTAGCTTGGTCTTGGGGCCCG-CCGGCCTGGCGGCCCTTAAACACAGTGGCGGCGCCGCCGCGCTCTACGCGTAGTAACTCTTCTCGCGACAGGGCGCAGGCGGGGCCAGCCGAAGCACCCCCTTCTCTCGG
;
END;

[ The following blocks are output data for analysis step 7998 ]
BEGIN TREES;
      TITLE Cystotheca_tjibodensis;
      LINK TAXA = TaxaForAnalysisStep7998;
      TREE PAUP_2 = [&R] (Sawadaea_nankinensis,((((Cystotheca_lanestris_ex_Myrica_californica_AF011288_USA,Cystotheca_lanestris_ex_Quercus_agrifolia_AB000933_USA,Cystotheca_lanestris_ex_Quercus_agrifolia_AF011289_USA),Cystotheca_lanestris_ex_Quercus_sp._AF073354_KOR),Cystotheca_wrightii_ex_Quercus_glauca_AB000932_JPN),(Cystotheca_tjibodensis_ex_Castanopsis_argentea_T,Cystotheca_tjibodensis_ex_Castanopsis_argentea_A)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48901]


END;
BEGIN TREES;
      TITLE Cystotheca_tjibodensis;
      LINK TAXA = TaxaForAnalysisStep7998;
      TREE PAUP_1 = [&R] (Sawadaea_nankinensis,(((((Cystotheca_lanestris_ex_Myrica_californica_AF011288_USA,Cystotheca_lanestris_ex_Quercus_agrifolia_AF011289_USA),Cystotheca_lanestris_ex_Quercus_agrifolia_AB000933_USA),Cystotheca_lanestris_ex_Quercus_sp._AF073354_KOR),Cystotheca_wrightii_ex_Quercus_glauca_AB000932_JPN),(Cystotheca_tjibodensis_ex_Castanopsis_argentea_T,Cystotheca_tjibodensis_ex_Castanopsis_argentea_A)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48900]


END;