#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 11, 2025; 19:43 GMT TreeBASE (cc) 1994-2008 Study reference: Jimenez-mejias P., Martin-bravo S., & Luceño M. 2012. Systematics and taxonomy of Carex sect. Ceratocystis (Cyperaceae) in Europe: a molecular and cytogenetic approach. Systematic Botany, : 000. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S12111] [ The following blocks are input data for analysis step 8180 ] BEGIN TAXA; TITLE TaxaForAnalysisStep8180; DIMENSIONS NTAX=26; TAXLABELS Carex_barrosii_R4 Carex_castroviejoi_R28_1 Carex_castroviejoi_R28_2 Carex_cretica Carex_cryptolepis_R4 Carex_cryptolepis_R7 Carex_demissa_x_Carex_lepidocarpa_R23 Carex_distans Carex_durieui_1 Carex_durieui_2 Carex_flava_R12 Carex_flava_R13 Carex_flaviformis_R9 Carex_hostiana_R29_1 Carex_hostiana_R29_2 Carex_lepidocarpa_R23 Carex_lepidocarpa_subsp_jemtlandica_R27 Carex_lutea_R31_1 Carex_lutea_R31_2 Carex_melanostachya Carex_monotropa_R10 Carex_section_Ceratocystis_R1_1 Carex_section_Ceratocystis_R1_2 Carex_sp_R32_1 Carex_sp_R32_2 Carex_viridula_R3 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M10803] TITLE Carex_section_Ceratocystis_reduced_ITS_matrix; LINK TAXA = TaxaForAnalysisStep8180; DIMENSIONS NCHAR=614; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Carex_barrosii_R4 CCGTTGCCTTTCCAAAAACACGACCGTCGAACACGTGACAGAATGCTACCGCGGAGGCGCCCGCCGCCTCCTCGGCCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGCGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCTGTCGGTCGCCAAGGCCAACAAAAAA--AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAACGGCA-GAGATGCGGACATTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCATGGCCCTGTACGACCCCATAACGAGGAGCATGCCGCCGCTGCTTCGGCTGCGCGGCGCCTTCGGT Carex_castroviejoi_R28_1 CCGTTGCCTTTCCAGAAACACGACCGTCGAACACGTGACAGATCGCTGCCGCGGAGGCGCCCGCCGCCTCCTCGGCCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGCGCGTTGGTTGCTGGCCGGAATACGGCGCGGGATGACGCCAAGGAACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCCGTCGGTCGCCGAGGCCAACAAAAAA--AGTACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAACGGCA-GAGATGCGGACATTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCATGGCCCTGTACGACCCCCTAACGAGGAGCATGCCGCCGCTGCTTCGGCTGCGCGGCGC??????T Carex_castroviejoi_R28_2 CCGTTGCCTTTCCAGAAACACGACCGTCGAACACGTGACAGATCGCTGCCGCGGAGGCGCCCGCCGCCTCCTCGGCCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGCGCGTTGGTTGCTGGCCGGAATACGGCGCGGGATGACGCCAAGGAACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCCGTCGGTCGCCGAGGCCAACAAAAAA--AGTACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAACGGCA-GAGATGCGGACATTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCATGGCCCTGTACGACCCCCTAACGAGGAGCATGCCGCCGCTGCTTCGGCTGCGCGGCGCCTTCGGT Carex_cretica ??????CCTCTCCAGAAACACGACCGTCGAACACGTGACAGAACGCTGCCGCGGAGGCGCTCGCCGCCTCCTCGGCCCCACCGGCCTCCTCCCTCTCGCC-CTCCGGGCGCGTCGGCGGACGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGGTAGA-GCCGAGGCACCGGCGTCCCGCTCAGGGGCTGTGCCGGTTGCCAAGGCCAACAAAAAAA-AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCACGGGCGTTAGAAGCCCATCCACGCTCGGCTGCCTAACCAACGGCA-GAGACGCGGACATTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCACGTCGCCCCGAGCCCCGTACCGACGCAGGGCCCTGTACGACCCCCTAACGAGGAGCACGCCTCCGCGGCTTCGGCCGCGCGGCGCCTTCGGT Carex_cryptolepis_R4 ??????????????AAAACACGACCGTCGAACACGTGACAGAATGCTACCGCGGAGGCGCCCGCCGCCTCCTCGGCCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGCGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCTGTCGGTCGCCAAGGCCAACAAAAAA--AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAACGGCA-GAGATGCGGACATTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCATGGCCCTGTACGACCCCATAACGAGGAGCATGCCGCCGCTGCTTCGGCTGCGCGGCGCCTTCG?T Carex_cryptolepis_R7 CCGTTGCCTTTCCAAAAACACGACCGTCGAACACGTGACAGAATGCTACTGCGGAGGCGCCCGCCGCCTCCTCGGTCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGCGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCTGTCGGTCGCCAAGGCCAACAAAAAA--AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAACGGCA-GAGATGCGGACATTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCATGGCCCTGTACGACCCCATAACGAGGAGCATGCCGCCGCTGCTTCGGCTGCGCGGCGCCTTCGGT Carex_demissa_x_Carex_lepidocarpa_R23 CCGTTGCCTTTCCAAAAACACGACCGTCGAACACGTGACAGAACGCTGCCGCGGAGGCGCCCGCCGCCTCCTCGGCCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGCGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAGGGGCTCTGTCGGTCGCCAAGGCCAACAAAAAA--AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAACGGCA-GAGATGCGGACATTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCATGGCCCTGTACGACCCCATAACGAGGAGCATGCCGCCGCTGCTTCGGCTGCGCGGCGCCTTCGGT Carex_distans TCGTTGCCTCTCC?GAAACACGACCGTCGAACACGTGACAGAATGCTGCTGCGGAGGCGCTTGCCGCCTCCTCGGCCCCACCGGCCTCCTCCCTCTCGCC-CTTCGGGCGCGTCGGTTGCTGGTCGGAATACGGCGCGGGTTGACGCCAAGGAACACGATAAAAGCCGAGGCACCGGCGAGCCGCTCGAGGGCTCTGTCGACTGCCAAGGCCAACAAAACT--AATATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGCTGCCTAACCAAGGGCA-GCGATGCGGTAATTGGCCCTCCGAACCGCGAGGTGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCACGTCACCCCGAGCCGCGTGCCGACGCAGGGCCCTGTACGACCCCCTAACGAGGAGCTGGCCGGCGCGGCTTCGGCTGCGCGGCGCCTTCGGT Carex_durieui_1 TCGTTGCCTTTCCAGAAACACGACCGTTGAACACGTGACAGAATGCTGCCGCGGAGGTGCTTGCCGCCTCCTCGGCCCCACCGGCCTCATCCCTCTCGCC-?TCCGGGCGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACAC?AGAAA-?CTGAGGGA?CGACGAGCTGCACAAGCGCTCTGTCGGTTGCCAAGGCCAATAAAAA---AATATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAAATAACGGCAAGAGATGCGGACATTGGCCCTCCGAACCGTAAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCACGCCACCCCGAGCCCCGTACCGA?GCAGGGCCTTGTTTGAACCCTTAACGAGGAGCATGCTGTTGCGGCTTCTGCTGTGCGGTGCCTTCGGA Carex_durieui_2 TCGTTGCCTTTCCAGAAACACGACCGTTGAACACGTGACAGAATGCTGCCGCGGAGGTGCTTGCCGCCTCCTCGGCCCCACCGGCCTCATCCCTCTCGCC-?TCCGGGCGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGAGAAA-GCTGAGGGA?CGACGAGCTGCACAAGCGCTCTGT?GGTTGCCAAGGCCAATAAAAA---AATATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAAATAACGGCAAGAGATGCGGACATTGGCCCTCCGAACCGTAAGGTGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCACGCCACCCCGAGCCCCGTACTGACGCAGGGCCTTGTTTGAACCCTTAACGAGGAGCATGCTGTTGCGGCTTCTGCTGTGCGGTGCCTTCGGA Carex_flava_R12 CCGTTGCCTTTCCAAAAACACGACCGTTGAACACGTGACAGAATGCTGCCGCGGAGGCGCCCGCCGCCTCCACGGCCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGTGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCTGTCGGTCGCCAAGGCCAACAAAAAAA-AATAGGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAACGGCA-GAGATGCGGACATTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCAGGGCCCTGTACGACCCCATAACGAGGAGCATGCCGCTGCTGCTTCGGCTGCGCGGCGCCTTCGGT Carex_flava_R13 CCGTTGCCTTTCCAAAAACACGACCGTTGAACACGTGACAGAATGCTGCCGCGGAGGCGCCCGCCGCCTCCACGGCCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGTGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCTGTCGGTCGCCAAGGCCAACAAAAAAAAAATATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAACGGCA-GAGATGCGGACATTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCAGGGCCCTGTACGACCCCATAACGAG?AGCATGCCGCTG??????????????????????????T Carex_flaviformis_R9 CTGTTGCCTTTCCAAAAACACGACCGTCGAACACGTGACAGAATGCTACTGCGGAGGCGCCCGCCGCCTCCTCGGTCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGCGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCTGTCGGTCGCCAAGGCCAACAAAAAA--AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAACGGCA-GAGATGCGGACATTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCATGGCCCTGTACGACCCCATAACGAGGAGCATGCCGCCGCTGCTTCGGCTGCGCGGCGCCTTCGGT Carex_hostiana_R29_1 CCGTTGCCTTTCCAGAAACACGACCGTCGAACACGTGACAGAACGCTGCCGCGGAGGCGCCCGCCGCCTCCTCGGCCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGCGCG?TGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCT?TGTCGGTCGCCAAGGCCAACAAAAAA--AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAACGGCA-GAGATGCGGACATTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGC?CGTCGCCCCGAGCCCCGTACCGACGCAGGGCCCTGTACGACCCCCTAACGAGGAGCATGCCGCCGCTGCTTCGGCTGCGCGGCGCCTTCGGT Carex_hostiana_R29_2 CCGTTGCCTTTCCAGAAACACGACCGTCGAACACGTGACAGAACGCTGCCGCGGAGGCGCCCGCCGCCTCCTCGGCCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGCGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCTGTCGGTCGCCAAGGCCAACAAAAAA--AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAACGGCA-GAGATGCGGACATTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCAGGGCCCTGTACGACCCCCTAACGAGGAGCATGCCGCCGCTGCTTCGGCTGCGCGGCGCCTTCGGT Carex_lepidocarpa_R23 CCGTTGCCTTTCCAAAAACACGACCGTCGAACACGTGACAGAACGCTGCCGCGGAGGCGCCCGCCGCCTCCTCGGCCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGCGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAGGGGCTCTGTCGGTCGCCAAGGCCAACAAAAAA--AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAACGGCA-GAGATGCGGACATTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCATGGCCCTGTACGACCCCATAACGAGGAGCATGCCGCCGCTGCTTCGGCTGCGCGGCGCCTTCGGT Carex_lepidocarpa_subsp_jemtlandica_R27 CCGTTGCCTTTCCAAAAACACGACCGCCGAACACGTGACAGAACGCTGCCGCGGAGGCGCCCGTCGCCTCCTCGGCCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGCGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCTGTCGGTCGCCAAGGCCAACAAAAAA--AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCC?AGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAACGGCA-GAGATGCGGACATTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCATGGCCCTGTACGACCCCATAACGAGGAGCATGCCGCCGCTGCTTCGGCTGCGCGGCGCCTTCGGT Carex_lutea_R31_1 CCGTTGCCTTTCCATAAACACGACCGTCGAACACGTGACAGAACGCTGCCGCGGAGGCGCCCGCCGCCTCCTCGGCCCCACCGGCCACCTCCCTCTCGCC-TTTCGGGCGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGTACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCTGTCGGTCGCCGAGGCCAACAAAAAA--AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTCGCCTAACCAACGGTA-GAGATGCGGACGTTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTGCTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCAGGGCCCTGTACGACCCCATAACGAGGAGCATGCCGCCGTTGCTTCGGCTGCGCGGCGCCTTCGGT Carex_lutea_R31_2 CCGTTGCCTTTCCATAAACACGACCGTCGAACACGTGACAGAACGCTGCCGCGGAGGCGCCCGCCGCCTCCTCGGCCCCACCGGCCACCTCCCTCTCGCC-TTTCGGGCGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGTACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCTGTCGGTCGCCGAGGCCAACAAAAAA--AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTCGCCTAACCAACGGTA-GAGATGCGGACGTTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTGCTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCAGGGCCCTGTACGACCCCATAACGAGGAGCATGCCGCCGTTGCTTCGGCTGCGCGGCGCCTTCGGT Carex_melanostachya CCGTTGCCTTTCCGGAAACACGACCGTCGAACACGTGACAGAATGCTGCCGCGGAGGCGCTCGCCGCCTCCTCGGCCCCACCGGCCTCCTCCCTCTCGCCCTTCCGGGCGCGTCGGTCGCTGGCCGGAACACGGCGCGGGATGACGCCAAGGAACACGGTAAA-GCTGAGGCGCCGGCGGGCCGCTCGCGGTCTCCGTCGGCTGCCGAGGCCA?CAGAAAAA-AATA?GACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGCTGCCTGACTAACGGCA-GAGATGCGGACATTGGCCCTCCGAGCCGCGAGGCGCGGTGGGCCCAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTGCTGCGCACGTCGCCCCGAGCCCCGT?CCGACGCAGGGCCTTGTACGACCCCCTAACGAGGAGCAAGCCGCTGCGGCTCCGGCCGCGCGGCGCCTTCGGT Carex_monotropa_R10 CCGTTGCCTTTCCAAAAACACGACCGTCGAACACGTGACAGAATGCTACCGCGGAGGCGCCCGGCGCCTCCTCGGCCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGCGCGTTGGTTGCTGGTCGAAATACGGCGCGGGATGACGCCAAGGAACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCTGTCGGTCGCCAAGGCCAACAAAAAA--AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCACGGGCGTTAGAAGCCCATCCACGCTCGGTCGCCTAACCAACGGCA-GAGATGCGGATATTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACTGACGCAGGGCCCTGTACGACCCCATAACGAGGAGCATGCTGCCGCTGCTTCGGCTGCGTGGCGCCTTCGGT Carex_section_Ceratocystis_R1_1 CCGTTGCCTTTCCAAAAACACGACCGTCGAACACGTGACAGAACGCTGCCGCGGAGGCGCCCGCCGCCTCCTCGGCCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGCGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCTGTCGGTCGCCAAGGCCAACAAAAAA--AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAACGGCA-GAGATGCGGACATTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCATGGCCCTGTACGACCCCATAACGAGGAGCATGCCGCCGCTGCTTCGGCTGCGCGGCGCCTTCGGT Carex_section_Ceratocystis_R1_2 CCGTTGCCTTTCCAAAAACACGACCGTCGAACACGTGACAGAACGCTGCCGCGGAGGCGCCCGCCGCCTCCTCGGCCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGCGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCTGTCGGTCGCCAAGGCCAACAAAAAA--AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAACGGCA-GAGATGCGGACATTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCATGGCCCTGTACGACCCCATAACGAGGAGCATGCCGCCGCTGCTTCGGCTGCGCGGCGCCTTCGGT Carex_sp_R32_1 CCGTTGCCTTTCCATAAACACGACCGTCGAACACGTGACAGAACGCTGCCGCGGAGGCGCCCGCCGCCTCCTCGGCCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGCGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGAAAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCTGCCGGTCGCCGAGGCCAACAAAAGA--AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAATGGCA-GAGATGCGGACGTTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCAGGGCCCTGTACGACCCCCTAACGAGGAGCATGCCGCCGCTGCTTCGGCAGCGCGGCGCCTTCGGT Carex_sp_R32_2 ????????????????????????CGTCGAACACGTGACAGAACGCTGCCGCGGAGGCGCCCGCCGCCTCCTCGGCCCCACCGGCCTCCTCCCTCTCGCC-TTTCGGGCGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGAAAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCTGCCGGTCGCCGAGGCCAACAAAAGA--AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAATGGCA-GAGATGCGGACGTTGGCCCTCCGAACCGCGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCAGGGCCCTGTACGACCCCCTAACGAGGAGCATGCCGCCGCTGCTTCGGCAGCGCGGCGCCTTCGGT Carex_viridula_R3 CCGTTGCCTTTCCAAAAACACGACCGTCGAACGCGTGACAGAATGCTACCGCGGAGGCGCCCGCCGCCTCCTCGGCCCCACCGGCCTCCTCC?TCTCGCC-TTTCGGGCGCGTTGGTTGCTGGTCGGAATACGGCGCGGGATGACGCCAAGGAACACGATAAA-GCGGAGGCACCGGCGAGCCGCTCAAGGGCTCTGTCGGTCGCCAAGGCCAACAAAAAA--AATACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTCATGGGCGTTAGAAGCCCATCCACGCTCGGTTGCCTAACCAACGGCA-GAGATGCGGACATTGGCCCTCCG?ACC?CGAGGCGCGGTGGGCCTAAGTGTGCGGCCGTCGTACGTGGCCGGGAGCGGCGAGTGGTGGGCTACTGCGCGCGTCGCCCCGAGCCCCGTACCGACGCATGGCCCTGTACGACCCCATAACGAGGAGCATGCCGCCGCTGCTTCGGCTGCGCGGCGCCTTCGGT ; END; [ The following blocks are output data for analysis step 8180 ] BEGIN TREES; TITLE Cernoaps; LINK TAXA = TaxaForAnalysisStep8180; TREE MJ_consensus_tree_of_the_49850_trees_from_Bayesian_analysis_of_ITS_Carex_section_Ceratocytistis = [&R] (Carex_melanostachya:0.054707,Carex_cretica:0.0428,Carex_distans:0.049393,(Carex_durieui_1:0.002417,Carex_durieui_2:0.004506):0.067056,(Carex_hostiana_R29_1:0.001849,Carex_hostiana_R29_2:0.001831,(Carex_castroviejoi_R28_1:0.001871,Carex_castroviejoi_R28_2:0.001876):0.011508,((Carex_sp_R32_1:0.001917,Carex_sp_R32_2:0.001978):0.011801,(Carex_lutea_R31_1:0.001886,Carex_lutea_R31_2:0.001854):0.015203):0.00695,(Carex_section_Ceratocystis_R1_1:0.00177,Carex_section_Ceratocystis_R1_2:0.001757,Carex_lepidocarpa_subsp_jemtlandica_R27:0.005294,(Carex_lepidocarpa_R23:0.001803,Carex_demissa_x_Carex_lepidocarpa_R23:0.001803):0.003515,((Carex_flava_R12:0.003441,Carex_flava_R13:0.002368):0.012715,(Carex_viridula_R3:0.003513,Carex_barrosii_R4:0.001766,Carex_cryptolepis_R4:0.001822,Carex_monotropa_R10:0.018432,(Carex_cryptolepis_R7:0.001801,Carex_flaviformis_R9:0.003496):0.005292):0.004478):0.004267):0.005668):0.017308); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr49548] END; BEGIN TREES; TITLE Cernoaps; LINK TAXA = TaxaForAnalysisStep8180; TREE MJ_consensus_tree_of_the_49850_trees_from_Bayesian_analysis_of_ITS_Carex_section_Ceratocytistis = [&R] (Carex_melanostachya:0.054707,Carex_cretica:0.0428,Carex_distans:0.049393,(Carex_durieui_1:0.002417,Carex_durieui_2:0.004506)1.00:0.067056,(Carex_hostiana_R29_1:0.001849,Carex_hostiana_R29_2:0.001831,(Carex_castroviejoi_R28_1:0.001871,Carex_castroviejoi_R28_2:0.001876)1.00:0.011508,((Carex_sp_R32_1:0.001917,Carex_sp_R32_2:0.001978)1.00:0.011801,(Carex_lutea_R31_1:0.001886,Carex_lutea_R31_2:0.001854)1.00:0.015203)0.94:0.00695,(Carex_section_Ceratocystis_R1_1:0.00177,Carex_section_Ceratocystis_R1_2:0.001757,Carex_lepidocarpa_subsp_jemtlandica_R27:0.005294,(Carex_lepidocarpa_R23:0.001803,Carex_demissa_x_Carex_lepidocarpa_R23:0.001803)0.97:0.003515,((Carex_flava_R12:0.003441,Carex_flava_R13:0.002368)1.00:0.012715,(Carex_viridula_R3:0.003513,Carex_barrosii_R4:0.001766,Carex_cryptolepis_R4:0.001822,Carex_monotropa_R10:0.018432,(Carex_cryptolepis_R7:0.001801,Carex_flaviformis_R9:0.003496)1.00:0.005292)0.71:0.004478)0.51:0.004267)0.88:0.005668)1.00:0.017308); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr49547] END;