#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 18, 2025; 7:33 GMT TreeBASE (cc) 1994-2008 Study reference: Tojo M., Van west P., Hoshino T., Kida K., Fujii H., Hakado A., Kawaguchi Y., Muehlhauser H., Van den berg A.H., Kuepper F., Herrero M., Klemsdal S., Tronsmo A.M., & Kanda H. 2012. Pythium polare, a new heterothallic Oomycete causing brown discoloration of Sanionia uncinata in the Arctic and Antarctic. Fungal Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S12355] [ The following blocks are input data for analysis step 8580 ] BEGIN TAXA; TITLE TaxaForAnalysisStep8580; DIMENSIONS NTAX=26; TAXLABELS 'Oomycete sp. BEA-2010 HM589307' Pythium_canariense_AY065618 Pythium_iwayamai_AB299388 Pythium_iwayamai_AB491614 Pythium_iwayamai_HQ643669 Pythium_nagaii_AY598705 Pythium_okanoganense_AB468817 Pythium_okanoganense_AY598649 Pythium_paddicum_AB468772 Pythium_paddicum_AY598707 'Pythium polaris Bi-7 JN383915' Pythium_polaris_OPU1078_AB299389 Pythium_polaris_OPU1084_AB299390 Pythium_polaris_OPU1243_AB299391 Pythium_polaris_OPU1244_AB299392 Pythium_polaris_OPU1335_AB299393 Pythium_polaris_OPU1336_AB299394 Pythium_polaris_OPU1435_AB299395 'Pythium sp. PB-2007 AM489757' 'Pythium sp. WJB-1 FJ415946' Pythium_splendens_AY598655 Pythium_ultimum_var._ultimum_AY598657 Pythium_violae_AY598706 Pythium_violae_AY598715 fungal_endophyte_HQ335305 uncultured_Pythium_AY129553 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M11872] TITLE Pythium_ITS; LINK TAXA = TaxaForAnalysisStep8580; DIMENSIONS NCHAR=1035; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'Oomycete sp. BEA-2010 HM589307' ---CACACCTAAAA--ACTTTCACGTGAACTGTCTGACTT--AGTTTTGCGCT-GCTGCG---GGGTGTGTTTTGCGTGCTTGC--ACGGG--AGGCACTG----TCTGCGGCGGCTGAACGAAGGTTG----GTGTCGTG-TTGTCTGT-GCGCGCTT--------------------------------------------------GATTGCGTGCGGG----ACGTCCGTCGCCGGCTGACTTATTTTT-CAACCCC-ATTACCTAACA-ACTGAACTAT--ACTGTGAGAACGAAAGTTCTCGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTCC-TGTGTAGTCAGGGGAGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GGTTCTTGTGATGAGGAG---------CACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGG-GTTTGCGACGTGTGTTGGTCG-AACGCGGTGATTTTCGGATCGCTCGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTTGAGGTGTACTGGCGGTCGTGGGCTTGACCTGTTTG--------TCGTTGTGTAGTAGGCTGTCGC-AT--TGTTTGCGGATTC-GTCTGTG-GCTGACACTTT--CTGGTGTTGGTT----GCGGGAGAATGATTG-ATTTGGGAAATG--TTGTGTTTGC-TGTGCCTTTTT-GGGTCGGCCTACATCTCAATTGGACCTGATATCAGACAA------------------ Pythium_canariense_AY065618 CCACACCTAAAAAA--CTTTCCACGTGAACTGTCTTACTT--AGTTTTGCGCT-GCTGTC---GGGAGTGTTCTGCGTGCGCTTT-GCACGGAGAGCGTTT----CTTGCAACGGCTGAACGAAGGTTG-GTGGCGTGTTGTCTTTTCTTTGCGTGCTT--------------------------------------------------GATTGTATGCGGGA--GACGTACGCCGCCGGCTGACTTACTTTTTCAACCCC-ATTACGAAACAAACTGAAGTATATACTGTGAGAACGAAAGTTCTCGCTTTGAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTCC-TGTGTAGTCAGGGGAGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCGG--TTTCTTGGTATTCTTTCCAA----GAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGAGTTTTGCGACGTGTGTTGGTCG-AACGCGGTGATTTTCGGATCGCTCGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGAATCCGTGTTCGCCTCGAGGTGTACTGGCGGTCGTGAGCTTGACCTGTTTG--------TCGGTGTGTAGTAGGCTTGTGC-ATTGTTTTCGCGGACTC-GTCTGCG-ACTGACGCTTT--CGGGTGTTGGTGTATTGCAGGAGAGAGCTTG-ATTTGGGAAGTT--TTGTGTTTGTTGTTTGCCTTCG-GGTGGAATAAGCATCTCAATTGGACCTGATATCAGACAAGACTACCC---------- Pythium_iwayamai_AB299388 CCACACCTAAAAAA--CTTTCCACGTGAACTGTCTTACTT--AGTTTTGCGCT-GCTGCG-GTGGCGGTGTTCTGCGCACTTGT--GCGTG--GGACGCTGTTCATCTGCGGCGGCTAAACGAAGGTTGGTTGGAGTGTTG-TTGTGTGT-GCTTTCTT------------------------------------------------------GCGCGCCGT---CGTACGCTCTGCCGGCTGACTTATTTTTTCAACCCC--TTACTTTAAAAACTGAACTAT--ACTGTGAGAACGAAAGTTCTCGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTTTTC-TGTGTAGTCAGGATTGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GTTTTTGGTGAAACAAAA--------GCACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGT-GTCTGCGGCGTGTGGCGCTCG-AACGCGGTGATTTTCGGATCGCTTGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTCGGTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGATGCTGTGTGTGGATTCCGTGTTTACCTTGAGGTGTACTGGCGGTTGCGGGCTTGACCCGGGTG--------TTGCTGTGTAGTAGAGTGTTGC-ATT-TTGTTGTGGACTC-GTCCGTG-GCTGGCGCCTTGATTGGTGTCGGTT----GTGGGAGAAGGGTTG-ATTTGGGAAATT--TTGTGTGCAC-TTTTGTGTACA-TCTCAA--------------------------------------------------- Pythium_iwayamai_AB491614 CCACACCTAAAAAA--CTTTCCACGTGAACTGTCTTACTT--AGTTTTGCGCT-GCTGCG-GTGGCGGTGTTCTGCGCACTTGT--GCGTG--GGACGCTGTTCATCTGCGGCGGCTAAACGAAGGTTGGTTGGAGTGTTG-TTGTGTGT-GCTTTCTT------------------------------------------------------GCGCGCCGT---CGTACGCTCTGCCGGCTGACTTATTTTTTCAACCCC--TTACTTTAAAAACTGAACTAT--ACTGTGAGAACGAAAGTTCTCGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTTTTC-TGTGTAGTCAGGATTGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GTTTTTGGTGAAACAAAA--------GCACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGT-GTCTGCGGCGTGTGGCGCTCG-AACGCGGTGATTTTCGGATCGCTTGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTCGGTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGATGCTGTGTGTGGATTCCGTGTTTACCTTGAGGTGTACTGGCGGTTGCGGGCTTGACCCGGGTG--------TTGCTGTGTAGTAGAGTGTTGC-ATT-TTGTTGTGGACTC-GTCCGTG-GCTGGCGCCTTGATTGGTGTCGGTT----GTGGGAGAAGGGTTG-ATTTGGGAAATT--TTGTGTGCAC-TTTTGTGTACA-TCTCAA--------------------------------------------------- Pythium_iwayamai_HQ643669 CCACACCTAAAA----CTTTCCACGTGAACTGTCTTACTT--AGTTTTGCGCT-GCTGTC---GGGAGTGTTCTGCGTGCGCGCTTGCACGGAGAGCGTTT----CTTGCAACGGCTGAACGAAGGTTG-GTGGCGTCTTG--TCTTCTTTGCGTGCTT--------------------------------------------------GATTGTATGCGGGA--GACGTACGCCGCCGGCTGACTTACTCTTTCAACCCC-ATTACGAAACAAACTGAAGTAT--ACTGTGAGAACGAAAGTTCTCGCTTTGAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTCCCTGTGTAGTCAGGGGAGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GTTTTTGGATATGTGTCTAA----AAGCACGATGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGA-GTTTGCGACGTGTGTTGGTCG-AACGCGGTGATCTTCGGATCGCTCGTGGTCGTCGGCGACTTCGGTGAATGCATTATATGGAAGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGGGTGTGACTTTCGCGTTCGCCTTGAGGTGTACTGGCGGTTGTGGGCTTGATCTGTTGG--------TTGTCGTGTAGTAGACTAGTGC-AT--TGTTTGTCGATTC-GTCTGCA-------------------ATTGCTT----GCAGGAGAATGATTG-ATTTGGGACATT--TTGTGTTTGTTTCCACTTTGCGGTGGGCGACATACATCTCAATTGGACCTGATATCAGACAAGACTACCCGCT------- Pythium_nagaii_AY598705 CCAGACCTAAAAAA--CTTTCCACGTGAACTGTCATGTAA--CGTTTCGTACTTGCTGTGTGTTGTGTCGATGTGCATTCATTT--GCGTG--TCG-GCTGCGCACTGGCA--GGTTGAACGAAGGTCGCATTGTGTACTT-GCCTGTGTCGCTCTTTTTTTGTTTCCT{GT}TGTGTTGTATTTCGGTACAAGAGAGAGGAGAGAGAGAGAGAGTGCGCGCGGTGTGTGTGTGCGGTGTCGGCTGACCTATTTTTTCAAACCCAATTACCTCAAATACTGATCAAT--ACTGTGAGAACGAAAGTTCTTGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTTC-TGTGTAGTCAGTGAGAGAGAGTTGCAGATGTGAAGTGTCTCGGCCGTTGGCGTGTGTGTGTCGTGTGCTTTTGTTAGCACGTGGTGCGTCGCGCACTGTGGCCGAGTCCTTTTAAACGGACCCGATCTTTCTTATGT-TTCTGCGACGTGTGGCGCTCG-AACGCGGCGATTTTCGGATCGCTCGCAGTTGTCGGCGACTTCGGCGAAGACATTAC--GGAGGAAACCTCAATTCGCGGTATGTTAGGCTTCGGTCGGACAATGTTGCT-TATTGTGTGTGGAATCTGTTTTCGCCTTGAGGTGTACTGGCGGTTGTGGGCTTGTGTCTGTTGGTCGTTATTTTCCGTGTAGTAGAGAGCTGC-TTG-TGTGCGTGGATTCTGCCTGTC-TCAGTCAGTTCGCTGGCTGTGTGTG----GTAAAAGATAGATTGCATTTGGGAAATG--TTGTACTCTT-GGTTGTTTGTG-TCTCTGTAATGGAGCGCGGCGGCTTTTTGTATCTCAA-------------------- Pythium_okanoganense_AB468817 CCACACCTAAAAAA--CTTTCCACGTGAACTGTCTTACTT--AGTTTTGCGCT-TCTGCG---GGAGGTGTTCTGCGCACATGT--GCGTG--GGGCGT----CTTTTGCGGCGGCTAAACGAAGGTTG-GTTGAGTGTTG-TTGTGCGT-GCTTTATT------------------------------------------------------GCGCGCCGT---CGTACGCT-TGCCGGCTGACTTATTTTTTCAACCCCTTTTACTTAACA-ACTGAATTAT--ACTGTGAGAACGAAAGTTCTCGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTTTCC-TGTGTAGTCAGGGAAGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GTTTTTGGTAAAACAAAA--------GCACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGTGCTCTGCAGCGTGTGGCGCTCG-AACGCAGTGATTTTCGGATCGCTTGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTCGGTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTAATTGTGTGTGGATTCCGTGTTCTCCTTGAGGTGTACTGGCGGTTGCGGGCTTGAACCGGGTG--------TTGCTGTGTAGTAGAGAGTTGC-ATT-TTGTTGTGGACTC-GTCCGTGGCCGGCTTCCTTCATTGGTGTCGGTT----GTGGGAGAAGGATTG-ATTTGGGAAATT--TTGTGTGCAT-TATGTCATTTA-TGACTGGTGTACATCTCAA-------------------------------------- Pythium_okanoganense_AY598649 CCACACCTAAAAAA--CTTTCCACGTGAACTGTCTTACTT--AGTTTTGCGCT-GCTGCG---AGGGGTGTTCTGCGCACATGT--GCGTA--GGGCGT----CTTTTGCGGCGGCTAAACGAAGGTTG-GTTGAGTGTTG-TTGTGCGT-GCTTTATT------------------------------------------------------GCGCGCCGT---CGTACGCT-TGCCGGCTGACTTATTTTTTCAACCCCTTTTAACTTACA-ACTGAATTAT--ACTGTGAGAACGAAAGTTCTCGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTTTCC-TGTGTAGTCAGGGGAGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GTTTTTGGTGAAACAAAA--------GCACGACGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGTGCTCTGCAGCGTGTGGCGCTCG-AACGCGGTGATTTTCGGATCGCTTGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTCGGTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTTACTGGGTGTGGATTCCGTGTTCTCCTTGAGGTGTACTGGCGGTTGCGGGCTTGAACCGGGTG--------TTGCTGTGTAGTAGAGAGTTGC-ATT-TTGTTGTGGACTC-GTCCGTGGCCGGCTTCCTTGATTGGTGTCGGTT----GTGGGAGAAGGATTG-ATTTGGGAAATT--TTGTGTGCAT--GTGTCATTTC-TGGCTCGTGTACATCTCAA-------------------------------------- Pythium_paddicum_AB468772 CCACACCTAAAAAA--CTTTCCACGTGAACTGTCTTACTT--AGTTTTGCGCT-GCTGCG-GTAGCGGTGTTCTGCGCACTTGT--GCGTG--GTGCGCTGTTTATCTGCAGCGGCTAAACGAAGGTTGGTTGGAGTGTTG-TTGTGTGT-GCTTTCTT------------------------------------------------------GCGCGCCAT---CGTACGCTCTGCCGGCTGACTTATTTTTTCAACCCC--TTACTTTAAAAACTGAACTAT--ACTGTGAGAACGAAAGTTCTCGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTTTTC-TGTGTAGTCAGGATTGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GTTTTTGGTAAAACAAAA--------GCACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGT-GTCTGCGGCGTGTGGCGCTCG-AACGCAGTGATTTTCGGATCGCTTGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTCGGTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGATGCTGTGTGTGGATTCCGTGTTGACCTTGAGGTGTACTGGCGGTTGCGGGCTTGACCCGGGTG--------TTGTTGTGTAGTAGAGTGTTGC-ATT-TTGTTGTGGACTC-GTCCGTG-ACTGGCGCCTTTGTTGGTGTCGGTT----GTGGGAGAAGGGTTG-ATTTGGGAAATT--TTGTGTGCAC-TTTTGTGTACA-TCTCAA--------------------------------------------------- Pythium_paddicum_AY598707 CCACACCTAAAAAA--CTTTCCACGTGAACTGTCTTACTT--AGTTTTGCGCT-GCTGCG-GTAGCGGTGTTCTGCGCACTTGT--GCGTG--GTGCGCTGTTTATCTGCAGCGGCTAAACGAAGGTTGGTTGGAGTGTTG-TTGTGTGT-GCTTTCTT------------------------------------------------------GCGCGCCAT---CGTACGCTCTGCCGGCTGACTTATTTTTTCAACCCC--TTACTTTAAAAACTGAACTAT--ACTGTGAGAACGAAAGTTCTCGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTTTTC-TGTGTAGTCAGGATTGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GTTTTTGGTAAAACAAAA--------GCACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGT-GTCTGCGGCGTGTGGCGCTCG-AACGCAGTGATTTTCGGATCGCTTGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTCGGTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGATGCTGTGTGTGGATTCCGTGTTGACCTTGAGGTGTACTGGCGGTTGCGGGCTTGACCCGGGTG--------TTGTTGTGTAGTAGAGTGTTGC-ATT-TTGTTGTGGACTC-GTCCGTG-ACTGGCGCCTTTGTTGGTGTCGGTT----GTGGGAGAAGGGTTG-ATTTGGGAAATT--TTGTGTGCAC-TTTTGTGTACA-TCTCAA--------------------------------------------------- 'Pythium polaris Bi-7 JN383915' ------------AA--CTTTCCACGTGAACTGTCTGACTT--AGTTTTGCGCT-GCTGCG---GGGTGTGTTTTGCGTGCTTGC--ACGGG--AGGCACTG----TCTGCGGCGGCTGAACGAAGGTTG----GTGTCGTG-TTGTCTGT-GCGCGCTT--------------------------------------------------GATTGCGTGCGGG----ACGTCCGTCGCCGGCTGACTTATTTTT-CAACCCC-ATTACCTAACA-ACTGAACTAT--ACTGTGAGAACGAAAGTTCTCGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTCC-TGTGTAGTCAGGGGAGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GCTTCTTGTGATGAGAAG---------CACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGG-GTTTGCGACGTGTGTTGGTCG-AACGCGGTGATTTTCGGATCGCTCGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTTGAGGTGTACTGGCGGTCGTGGGCTTGACCTGTTTG--------TCGTTGTGTAGTAGGCTGTCGC-AT--TGTT------------------------------------------------------------------------------------------------------------------------------------------------------------- Pythium_polaris_OPU1078_AB299389 CCACACCTAAAAAA--CTTTCCACGTGAACTGTCTGACTT--AGTTTTGCGCT-GCTGCG---GGGTGTGTTTTGCGTGCTTGC--ACGGG--AAGCACTG----TCTGCGGCGGCTGAACGAAGGTTG----GTGTCGTG-TTGTCTGT-GCGCGCTT--------------------------------------------------GATTGCGTGCGGG----ACGTCCGTCGCCGGCTGACTTATTTTT-CAACCCC-ATTACCTAACA-ACTGAACTAT--ACTGTGAGAACGAAAGTTCTCGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTCC-TGTGTAGTCAGGGGAGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GCTTCTTGTGATGAGAAG---------CACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGG-GTTTGCGACGTGTGTTGGTCG-AACGCGGTGATTTTCGGATCGCTCGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTTGAGGTGTACTGGCGGTCGTGGGCTTGACCTGTTTG--------TCGTTGTGTAGTAGGCTGTCGC-AT--TGTTTGCGGATTC-GTCTGTG-GCTGACACTTT--CTGGTGTTGGTT----GCGGGAGAATGATTG-ATTTGGGAAATG--TTGTGTTTGC-TGTGCCTTTTT-GGGTCGGCCTACATCTCAA-------------------------------------- Pythium_polaris_OPU1084_AB299390 CCACACCTAAAAAA--CTTTCCACGTGAACTGTCTGACTT--AGTTTTGCGCT-GCTGCG---GGGTGTGTTTTGCGTGCTTGC--ACGGG--AAGCACTG----TCTGCGGCGGCTGAACGAAGGTTG----GTGTCGTG-TTGTCTGT-GCGCGCTT--------------------------------------------------GATTGCGTGCGGG----ACGTCCGTCGCCGGCTGACTTATTTTT-CAACCCC-ATTACCTAACA-ACTGAACTAT--ACTGTGAGAACGAAAGTTCTCGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTCC-TGTGTAGTCAGGGGAGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GCTTCTTGTGATGAGAAG---------CACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGG-GTTTGCGACGTGTGTTGGTCG-AACGCGGTGATTTTCGGATCGCTCGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTTGAGGTGTACTGGCGGTCGTGGGCTTGACCTGTTTG--------TCGTTGTGTAGTAGGCTGTCGC-AT--TGTTTGCGGATTC-GTCTGTG-GCTGACACTTT--CTGGTGTTGGTT----GCGGGAGAATGATTG-ATTTGGGAAATG--TTGTGTTTGC-TGTGCCTTTTT-GGGTCGGCCTACATCTCAA-------------------------------------- Pythium_polaris_OPU1243_AB299391 CCACACCTAAAAAA--CTTTCCACGTGAACTGTCTGACTT--AGTTTTGCGCT-GCTGCG---GGGTGTGTTTTGCGTGCTTGC--ACGGG--AGGCACTG----TCTGCGGCGGCTGAACGAAGGTTG----GTGTCGTG-TTGTCTGT-GCGCGCTT--------------------------------------------------GATTGCGTGCGGG----ACGTCCGTCGCCGGCTGACTTATTTTT-CAACCCC-ATTACCTAACA-ACTGAACTAT--ACTGTGAGAACGAAAGTTCTCGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTCC-TGTGTAGTCAGGGGAGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GCTTCTTGTGATGAGAAG---------CACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGG-GTTTGCGACGTGTGTTGGTCG-AACGCGGTGATTTTCGGATCGCTCGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTTGAGGTGTACTGGCGGTCGTGGGCTTGACCTGTTTG--------TCGTTGTGTAGTAGGCTGTCGC-AT--TGTTTGCGGATTC-GTCTGTG-GCTGACACTTT--CTGGTGTTGGTT----GCGGGAGAATGATTG-ATTTGGGAAATG--TTGTGTTTGC-TGTGCCTTTTT-GGGTCGGCCTACATCTCAA-------------------------------------- Pythium_polaris_OPU1244_AB299392 CCACACCTAAAAAA--CTTTCCACGTGAACTGTCTGACTT--AGTTTTGCGCT-GCTGCG---GGGTGTGTTTTGCGTGCTTGC--ACGGG--AGGCACTG----TCTGCGGCGGCTGAACGAAGGTTG----GTGTCGTG-TTGTCTGT-GCGCGCTT--------------------------------------------------GATTGCGTGCGGG----ACGTCCGTCGCCGGCTGACTTATTTTT-CAACCCC-ATTACCTAACA-ACTGAACTAT--ACTGTGAGAACGAAAGTTCTCGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTCC-TGTGTAGTCAGGGGAGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GCTTCTTGTGATGAGAAG---------CACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGG-GTTTGCGACGTGTGTTGGTCG-AACGCGGTGATTTTCGGATCGCTCGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTTGAGGTGTACTGGCGGTCGTGGGCTTGACCTGTTTG--------TCGTTGTGTAGTAGGCTGTCGC-AT--TGTTTGCGGATTC-GTCTGTG-GCTGACACTTT--CTGGTGTTGGTT----GCGGGAGAATGATTG-ATTTGGGAAATG--TTGTGTTTGC-TGTGCCTTTTT-GGGTCGGCCTACATCTCAA-------------------------------------- Pythium_polaris_OPU1335_AB299393 CCACACCTAAAAAA--CTTTCCACGTGAACTGTCTGACTT--AGTTTTGCGCT-GCTGCG---GGGTGTGTTTTGCGTGCTTGC--ACGGG--AGGCACTG----TCTGCGGCGGCTGAACGAAGGTTG----GTGTCGTG-TTGTCTGT-GCGCGCTT--------------------------------------------------GATTGCGTGCGGG----ACGTCCGTCGCCGGCTGACTTATTTTT-CAACCCC-ATTACCTAACA-ACTGAACTAT--ACTGTGAGAACGAAAGTTCTCGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTCC-TGTGTAGTCAGGGGAGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GCTTCTTGTGATGAGAAG---------CACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGG-GTTTGCGACGTGTGTTGGTCG-AACGCGGTGATTTTCGGATCGCTCGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTTGAGGTGTACTGGCGGTCGTGGGCTTGACCTGTTTG--------TCGTTGTGTAGTAGGCTGTCGC-AT--TGTTTGCGGATTC-GTCTGTG-GCTGACACTTT--CTGGTGTTGGTT----GCGGGAGAATGATTG-ATTTGGGAAATG--TTGTGTTTGC-TGTGCCTTTTT-GGGTCGGCCTACATCTCAA-------------------------------------- Pythium_polaris_OPU1336_AB299394 CCACACCTAAAAAA--CTTTCCACGTGAACTGTCTGACTT--AGTTTTGCGCT-GCTGCG---GGGTGTGTTTTGCGTGCTTGC--ACGGG--AAGCACTG----TCTGCGGCGGCTGAACGAAGGTTG----GTGTCGTG-TTGTCTGT-GCGCGCTT--------------------------------------------------GATTGCGTGCGGG----ACGTCCGTCGCCGGCTGACTTATTTTT-CAACCCC-ATTACCTAACA-ACTGAACTAT--ACTGTGAGAACGAAAGTTCTCGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTCC-TGTGTAGTCAGGGGAGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GCTTCTTGTGATGAGAAG---------CACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGG-GTTTGCGACGTGTGTTGGTCG-AACGCGGTGATTTTCGGATCGCTCGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTTGAGGTGTACTGGCGGTCGTGGGCTTGACCTGTTTG--------TCGTTGTGTAGTAGGCTGTCGC-AT--TGTTTGCGGATTC-GTCTGTG-GCTGACACTTT--CTGGTGTTGGTT----GCGGGAGAATGATTG-ATTTGGGAAATG--TTGTGTTTGC-TGTGCCTTTTT-GGGTCGGCCTACATCTCAA-------------------------------------- Pythium_polaris_OPU1435_AB299395 CCACACCTAAAAAA--CTTTCCACGTGAACTGTCTGACTT--AGTTTTGCGCT-GCTGCG---GGGTGTGTTTTGCGTGCTTGC--ACGGG--AGGCACTG----TCTGCGGCGGCTGAACGAAGGTTG----GTGTCGTG-TTGTCTGT-GCGCGCTT--------------------------------------------------GATTGCGTGCGGG----ACGTCCGTCGCCGGCTGACTTATTTTT-CAACCCC-ATTACCTAACA-ACTGAACTAT--ACTGTGAGAACGAAAGTTCTCGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTCC-TGTGTAGTCAGGGGAGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GCTTCTTGTGATGAGAAG---------CACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGG-GTTTGCGACGTGTGTTGGTCG-AACGCGGTGATTTTCGGATCGCTCGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTTGAGGTGTACTGGCGGTCGTGGGCTTGACCTGTTTG--------TCGTTGTGTAGTAGGCTGTCGC-AT--TGTTTGCGGATTC-GTCTGTG-GCTGACACTTT--CTGGTGTTGGTT----GCGGGAGAATGATTG-ATTTGGGAAATG--TTGTGTTTGC-TGTGCCTTTTT-GGGTCGGCCTACATCTCAA-------------------------------------- 'Pythium sp. PB-2007 AM489757' ----------------------------------------------------------------GGTGTGTTTTGCGTGCTTGC--ACGGGG-AGGCACTG----TCTGCGGCGGCTGAACGAAGGTTG----GTGTCGTG-TTGTCTGT-GCGCGCTT--------------------------------------------------GATTGCGTGCGGG----ACGTCCGTCGCCGGCTGACTTATTTTT-CAACCCCCATTACCTAACA-ACTGAACTAT--ACTGTGAGAACGAAAGTTCTCGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTCC-TGTGTAGTCAGGGGAGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GCTTCTTGTGATGAGGAG---------CACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGG-GTTTGCGACGTGTGTTGGTCG-AACGCGGTGATTTTCGGATCGCTCGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTTGAGGTGTACTGGCGGTCGTGGGCTTGACCTGTTTG--------TCGTTGTGTA??A?GCTGTC?C-AT--TGTTTGCGGATTC-?TCTGTG-GCTGACACTTT--CTGGTGTTGGTT----GC------------------------------------------------------------------------------------------------------------ 'Pythium sp. WJB-1 FJ415946' CCACACCTAAAAAA--CTTTCCACGTGAACTGTCTTACTT--AGTTTTGCGCT-GCTGCA-----GAGTATTCTGTGCTCTTTT--GAGTATAGAGTAT------ACTGTAGTGGCTGAACGAAGGTTG-GTTGAGTGTTGTCTCTATGT-GCTTGATT------------------------------------------------------GCATGTGGG----ACGTACGCCACCAGCTGACTTATTTTTTCAACCCC--TTACATAAACAACTGAAAAAT--ACTGTGAGAACGAAAGTTCTTGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATACCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTCC-TGTGTAGTCAGGGAAAGAGA-CGGCTGATGTGAAGTGTCTCG------------CGTGCGTCG---GTTTTTGGTATTTCTAAA-------AGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGA-GTTTACGACGTGTGTTGGTCG-AACGCGGTGATTTTCGGATCGCTCGTGGTCGTCGGCGACTTCGGTGAATACATTAT--GGAAGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTTCGTATTCGCCTTGAGGTGTACTGGCGGTTGTGGGCTTGATCTGTTGA--------TTGTCGTGTAGTAGATGAATGC-AA--TGTTTGTGAATTC-GTCTACA-AGTGATACACTTTTGTGTATTGGTT----GTAGGAGAGTGATTG-ATTTGGGAAATA--TTGTGTTTGT---TTGCCTTTG-TGTAAATAA-ACATCTCAA-------------------------------------- Pythium_splendens_AY598655 CCACACTTTAAAA---CTGTCCACGTGAACTGT-AAGCAA---GTCTAGCGCT-GTGACT---GA---TCTGGTGTTTTC------GGATA--CTGGATCG-----GGAGTCAGCAGGA-CGAAGGTTG------GTCT----CGT---------AAT-------------------------------------------------------GTAAATTAT----G--GGACTAGCTGATGCATTCCT-TTTTCAAACCC--TTACCTAAAT-ACTGATTGAT--ACTGTGGGGACGAAAGTCCTTGCTTTTA-CTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAA{AC}TTGCCTTTCTTTTTC-TGTGTAGTCAG{AG}GAGAGAGACGTGCAGATGTGAAGTGTCTCG------------CATGGTT-----GCGTT------TTCGGA--------CGACGATCTGTCGAGTCCTTTTAAATGGACAGGGTCTTT-CTATGGTCTGTGTGAAGTGTGGTGCTCGAAAGGCAGTGATTTTCGGATCGCTGGCGGCTTTTGGCGACTTCGGCATGAACAT-AT--GGAGACTACCTCGGTTCGCGGTATGTTAGGCTTCGGCTGAACAATGTTGCGTAATTGAGTGTGGAATCCGTTTGTGCCTTGAGGTGTAC{CT}{AG}TAGGTTGTCGGCTTGA{AG}CTGTGGA--------TC{AG}TTGTTTAGTAGGGTATTTTCACGATGTACGGAGACGCTGC---AT--------------------TTAGTTG--CGTAGAGAGA---TTT-ATTTGGGAAATT--CTGTATCGTTGATGATCGAATGATTGTCGGTG-GTATCTCAA-------------------------------------- Pythium_ultimum_var._ultimum_AY598657 CCACACTTTAAAAA-ACTGTCCACGTGAACTGT-AAGCAA---GTCTAGCGCT-GTGACT---GA---GCTGGTGTTTTCATTTTTGGACA--CTGGAACG-----GGAGTCAGCAGGA-CGAAGGTTG------GTCTGT--TGT---------AAT-------------------------------------------------------GCAAGTTAT----GATGGACTAGCTGATGAACTTTTGTTTTTAAACCC--TTACCTAAAT-ACTGATTTAT--ACTGTGGGGACGAAAGTCCTTGCTTTTA-CTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTTTTC-TGTGTAGTCAGGGATGGA-ATGTGCAGATGTGAAGTGTCTCG------------CATGGTT-----GCGTTCGTTTTTTCGAT--------CGAGAATCTGTCGAGTCCTTTTAAATGGACACGGTCTTTTCTATGGTTTCTATGAAGTGTAATGGTTGGAAGGCAGTGATTTTCGGATTGCTGGCGGCTTTTGGCGACTTCGGTATGAACGT-AT--GGAGACTAGCTCAATTCGTGGTATGTTAGGCTTCGGCTCGACAATGTTGCGTAATTGTGTGTGGTCTTTGTTTGTGCCTTGAGGTGTACTAGAGGTTGTCGGTTTGAACCGTAAG--------TGATTGTTTAGTAGAGCATTTTCACGATGTATGGAGACGCTGC---AT--------------------TTAGTTG--CGTAGAGAGA---TTG-ATTTGGGAAATT--TTGTATCATTGTCAATTGCAAGATTGTGTATG-GTATCTCAA-------------------------------------- Pythium_violae_AY598706 CCACACCTAAAAAATACTTTCCACGTGAACTGTCTTACTT--AGTTTTGCGCT-GCTGTC---GGGAGTGTTCTGCGCGCGCTT--GCACGGAGAGCGTTT----CTTGCAACGGCTGAACGAAGGTTG-GTTGAGTGTG--TTGTCTTTTGCGTGCTT--------------------------------------------------GATTGTATGCGGGG--GACGTACGCCGCCGGCTGACTTACTTTTTCAACCCC-ATTACGAAACAAACTGAAGTAT--ACTGTGAGAACGAAAGTTCTCGCTTTGAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAAATGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTCC-TGTGTAGTCAGGGGAGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCGG--TTTCTTGGTATTGTTTCCAA----GAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGGGTTTTGCGACGTGTGTTGGTCG-AACGCGGTGATTTTCGGATCGCTCGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGGGTGTGGCTTCCGTGTTCGCCTCGAGGTGTACTGGCGGTCGTGGGCTTGACCTGTTTG--------TGGCTGTGTAGTAGGCTAGTGC-ATTGTTT-CGCGGATCC-GTCTGCG-ACTGACGCTTT--CGGGTGTTGGTG--TTGTAGGAGAAAGATTG-ATTTGGGAAGTA--TTGTGTTTGC-GTTTGCCTTCG-GGCG-AGTAAGCATCTCAA-------------------------------------- Pythium_violae_AY598715 CCACACCTAAAAA---CTTTCCACGTGAACCGTCAAGTAATAGATTCAGTGCC-TCTGCT---GTGGCTGTGGTGTTTTC------GGACG--CTGCGCTG-----TGGCGGAGGAGGAACGAAGGTTG------GTCTTG--TGTGTGCACAGCAAT-------------------------------------------------------GTGTGT-GT----GCGGGACTGGCTGATCTATTTTT--TTCAAACCCC--ATACAAAATG-ACTGATTTAT--ACTGTGAGAACGAAAGTTCTTGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTTTTC-TGTGTAGTCAGGAGAAGATGAGTGCAGATGTGAAGTGTCTCG------------CTGGCCT-----ACTTCTCTCTTTGGGGAG-------TGGACAGGTATCGAGTCCTTTTAAAACGACACGATCTTT-CTACTGTTACTGAGAAGTGCGACGCTCG-AATGCGGTGGTCTTCGGATCGCGTGCAGTTGTCGGGGTCCTCGGCGTGAACAT-AT--GGAGGAAGCCTCGATTCGCGGTATGTTATGCTTCGGCTGTACAATGTTGCGTGATTGGGAGTGGAATTCGTTTGTGCCTTGAGGTGTACTGACGGTTGTGTGCTTGAACTGGAGG--------TTGTTGTGTAGTAGAGTGTTGT-GTGATGTACAGCGACGCCACTTCAT--------------------TTTGTTG--TGGGTAGAGGACGTCT-ATTTGGGAAAGAAGTAGTATCGGCAGCTTTTG-GTAGTTGAAGGTA-GTATCTCAATTGGACCTGATATCAGACAAGACTACCCGCTGAACTTA fungal_endophyte_HQ335305 -----------------TTTCCACGTGAACTGTCTGACTT--AGTTTTGCGCT-GCTGCG---GGGTGTGTTTTGCGTGCTTGC--ACGGG--AAGCACTG----TCTGCGGCGGCTGAACGAAGGTTG----GTGTCGTG-TTGTCTGT-GCGCGCTT--------------------------------------------------GATTGCGTGCGGG----ACGTCCGTCGCCGGCTGACTTATTTTT-CAACCCC-ATTACCTAACA-ACTGAACTAT--ACTGTGAGAACGAAAGTTCTCGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTCC-TGTGTAGTCAGGGGAGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---G?TTCTTGTGATGAGAAG---------CACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGG-GTTTGCGACGTGTGTTGGTCG-AACGCGGTGATTTTCGGATCGCTCGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTTGAGGTGTACTGGCGGTCGTGGGCTTGACCTGTTTG--------TCGTTGTGTAGTAGGCTGTCGC-AT--TGTTTGCGGATTC-GTCTGTG-GCTGACACTTT--CTGGTGTTGGTT----GCGGGAGAATGATTG-ATTTGGGAAATG--TTGT---------------------------------------------------------------------------- uncultured_Pythium_AY129553 CCACACCTAAAAAA--CTTTCCACGTGAACTGTCTGACTT--AGTTTTGCGCT-GCTGCG---GGGTGTGTTTTGCGTGCTTGC--ACGGG--AGGCACTG----TCTGCGGCGGCTGAACGAAGGTTG----GTGTCGTG-TTGTCTGT-GCGCGCTT--------------------------------------------------GATTGCGTGCGGG----ACGTCCGTCGCCGGCTGACTTATTTTT-CAACCCC-ATTACCTAACA-ACTGAACTAT--ACTGTGAGAACGAAAGTTCTCGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTCC-TGTGTAGTCAGGGGAGGAGA-CGGCCGATGTGAAGTGTCTCG------------CGTGCGTCG---GCTTCTTGTGATGAGAAG---------CACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGG-GTTTGCGACGTGTGTTGGTCG-AACGCGGTGATTTTCGGATCGCTCGTGGTCGTCGGCGACTTCGGTGAATGCATTAT--GGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTTGAGGTGTACTGGCGGTCGTGGGCTTGACCTGTTTG--------TCGTTGTGTAGTAGGCTGTCGC-AT--TGTTTGCGGATTC-GTCTGTG-GCTGACACTTT--CTGGTGTTGGTT----GCGGGAGAATGATTG-ATTTGGGAAATG--TTGTGTTTGC-TGTGCCTTTTT-GGGTCGGCCTACATCTCAA-------------------------------------- ; END; [ The following blocks are output data for analysis step 8580 ] BEGIN TREES; TITLE Pythium_ITS_Result; LINK TAXA = TaxaForAnalysisStep8580; TREE NJT = [&R] (((((((((((Pythium_polaris_OPU1335_AB299393:0.0,Pythium_polaris_OPU1435_AB299395:0.0)0.9999:0.0,Pythium_polaris_OPU1244_AB299392:0.0)0.9999:0.0,Pythium_polaris_OPU1243_AB299391:0.0)0.9999:0.0,uncultured_Pythium_AY129553:0.0)0.7108:5.0628E-4,(Pythium_polaris_OPU1078_AB299389:0.0,(Pythium_polaris_OPU1084_AB299390:0.0,Pythium_polaris_OPU1336_AB299394:0.0)0.9999:0.0)0.7108:6.5381E-4)0.9982:0.00290881,('Oomycete sp. BEA-2010 HM589307':0.00834142,'Pythium sp. PB-2007 AM489757':-0.00698272)0.7924:0.00224126)0.9998:0.00353152,fungal_endophyte_HQ335305:-0.00550876)0.9998:0.0051705,'Pythium polaris Bi-7 JN383915':-0.00970415)0.9998:0.03239679,('Pythium sp. WJB-1 FJ415946':0.06416107,(Pythium_iwayamai_HQ643669:0.03802558,(Pythium_canariense_AY065618:0.01793462,Pythium_violae_AY598706:0.01388356)0.9998:0.02186744)0.9958:0.01453366)0.9832:0.00945733)0.9998:0.02000449,((Pythium_okanoganense_AB468817:0.01056917,Pythium_okanoganense_AY598649:0.01132023)0.9998:0.01915062,((Pythium_iwayamai_AB299388:0.0,Pythium_iwayamai_AB491614:0.0)0.9978:0.00596215,(Pythium_paddicum_AY598707:0.0,Pythium_paddicum_AB468772:0.0)0.9986:0.00913658)0.9998:0.02313096)0.9998:0.03344757)0.9998:0.03372206,Pythium_nagaii_AY598705:0.10709154,(Pythium_violae_AY598715:0.09988112,(Pythium_ultimum_var._ultimum_AY598657:0.05000935,Pythium_splendens_AY598655:0.03009077)0.9998:0.06807021)0.9998:0.04640821); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr51292] END;