#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 21:30 GMT TreeBASE (cc) 1994-2008 Study reference: Srivastava P.K., & Shenoy B.D. 2012. Stimulatory effects of fungi on plant growth promotion and soil properties. Microbes and Environments, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S12359] [ The following blocks are input data for analysis step 8601 ] BEGIN TAXA; TITLE TaxaForAnalysisStep8601; DIMENSIONS NTAX=33; TAXLABELS Hypocrea_ceramica_FJ860743 Hypocrea_crassa_EU280067 Hypocrea_jecorina_AF414296 Hypocrea_lixii_AY605713 Hypocrea_minutispora_AY865634 Hypocrea_novaezelandiae_X93969 Hypocrea_orientalis_X93964 Hypocrea_pseudokoningii_EU280097 Hypocrea_sp._FNBR6 Trichoderma_aggressivum_FJ442607 Trichoderma_asperellum_AY380912 Trichoderma_citrinoviride_EU280098 Trichoderma_croceum_DQ083026 Trichoderma_effusum_AF149858 Trichoderma_fasciculatum_DQ087258 Trichoderma_fertile_DQ083018 Trichoderma_ghanense_Z69588 Trichoderma_inhamatum_FJ442680 Trichoderma_konilangbra_AF400261 Trichoderma_longibrachiatum_EU401556 Trichoderma_longipile_AY865630 Trichoderma_oblongisporum_AF414319 Trichoderma_parceramosum_AF414299 Trichoderma_pseudokoningii_Z31014 Trichoderma_pubescens_EU280121 Trichoderma_saturnisporum_AF414295 Trichoderma_saturnisporum_Z48726 Trichoderma_sinensis_AF486014 Trichoderma_sp_AJ507135 Trichoderma_spirale_EU280068 Trichoderma_strictipilis_AF400263 Trichoderma_strigosum_EU280120 Trichoderma_tomentosum_AF414323 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M11583] TITLE FNBR6_ITS; LINK TAXA = TaxaForAnalysisStep8601; DIMENSIONS NCHAR=608; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Hypocrea_ceramica_FJ860743 CCGAGTTTACAACTCCCAAACCCCAATGTGAACGTTACCAAACTGTTGCCTCGGCGGGAT-----CTC-TGCCCCGGGCGCGTCGCAGCCCCGGA--CCAAGGCGCCCGCCGGAGGACCAACC-CAAACTCTTATT-----------GTATACCCCCTCGCGGGTTTTTTCTACACT--ATCTGAGCCAT-CTCGGCGCCCCTCGCGGGCGTTTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGCC---CTTTC--ACCGG-GGCCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGTCC-AATGCCGTAAAACACCC-AACTT-TCTGAAATGTTGACCTCGGATCAGGTAGGA Hypocrea_crassa_EU280067 CCGAGTTTACAACTCCCAAACCCAA-TGTGAACGTTACCAAACTGTTGCCTCGGCGGGAT-----CTC-TGCCCCGGGCGCGTCGCAGCCCCGGA--CCAAGGCGCCCGCCGGAGGACCAACC-AAAACTCTTATT-----------GTATACCCCCTCGCGGGTTTTTTACT------ATCTGAGCCAT-CTCGGCGCCCCTCGTGGGCGTTTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGCC---CTTT---ACGGG-G-CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCATCGGGAGCGCGGCGCGTCC-ACAGCCGTTAAACACCCCAAACT-TCTGAAATGTTGACCTCGGATCAGGTAGGA Hypocrea_jecorina_AF414296 CCGAGTTTACAACTCCCAAACCCCAATGTGAACGTTACCAATCTGTTGCCTCGGCGGGATT----CTCT-GCCCCGGGCGCGTCGCAGCCCCGGATCCCATGGCGCCCGCCGGAGGACCAACTC-AAACTCTTTTT-TCTCTCCGTCGCGGCTTCCGTCGCGGCTCTGTTTTACCTTTGCTCTGAGCCTTTCTCGGCGACCCTAGCGGGCGTCTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGC---CCCTCA--C-CGGG--CCGCCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGGCC-ACAGCCGTAAAACACCCCAAACT--CTGAAATG????????????????????? Hypocrea_lixii_AY605713 ?????TTTACAACTCCCAAACCCAA-TGTGAACGTTACCAAACTGTTGCCTCGGCGGGAT-----CTC-TGCCCCGGGTGCGTCGCAGCCCCGGA--CCAAGGCGCCCGCCGG{AG}{AG}GACCAACCTAAAACTCTTATT-----------GTATACCCCCTCGCGGGTTTTTTTTT-ATA--ATCTGAGCCTT-CTCGGCGCCTCTCGTAGGCGTTTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAA{AG}AACGCAGCGAAATGCGATAAGTAATGTGAATTGCA{AG}AATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGCCCTCCCTTA--GCGGGTGGCCGTCTCCGAAATACAG{GT}GGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGC{AC}CA-CTCGCATCGGGAGCGCGGCGCGTCC-ACAGCCGTTAAACACCC--AACT-TCTGAAATGTTGACC{CT}CGGATCAGGTAGGA Hypocrea_minutispora_AY865634 CCGAGTTTACAACTCCCAAACCCCTATGTGAACGTTACCAAACTGTTGCCTCGGCGGGAAAATT-TCATCGCCCCGGGCGCGTCGCAGCCCCGGA--ACCAGGCGCCCGCCGGAGGACCAACC-AAAACTCTTTTG----------TAT-GTCCCC-TCGCGGACTTTTATTA------TTCTGAACCAT-CTCGGCGCCCCTAGCGGGCGTTTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGTCCGGCGTTGGGGAT---CGGCCCTTTA---CGGGG--CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGTCC-ACGTCCGTAAAACACCC--AACTT-CTGAAAGGTTGACCTCGGATCAGGTAGGA Hypocrea_novaezelandiae_X93969 CCGAGTTTACAACTCCCAAACCCCAGTGTGAACGTTACCAATCTGTTGCCTCGGCGGGAT-----CTCT-GCCCCGGGCGCGTCGCAGCCCCGGATCCCATGGCGCCCGCCGGAGGACCAAC-CAAAACTCCTTTT-TATCTCCGTCGCGGCT-CCGTCGCGGCTCTGTTTTA-TTTTGCTCTGAGCCTTTCTCGGCGACCCTAGCGGGCGTCTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAGCCCCTCCGGGGGGTCGGCGTTGGGGATCGGC---CCCTCA--C-CGGG--CCGCCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGGCC-ACAGCCGTAAAACACCCAAAACATTCTGAAATGTTGACCTCGGATCAGGTAGGA Hypocrea_orientalis_X93964 CCGAGTTTACAACTCCCAAACCCCAATGTGAACGTTACCAATCTGTTGCCTCGGCGGGATT----CTCTTGCCCCGGGCGCGTCGCAGCCCCGGATCCCATGGCGCCCGCCGGAGGACCAACTCCAAACTCTTTTT-TCTCTCCGTCGCGGCTCCCGTCGCGGCTCTGTTTTATTTTTGCTCTGAGCCTTTCTCGGCGACCCTAGCGGGCGTCTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGC---CCCTCA--C-CGGG--CCGCCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCATGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGGCC-ACAGCCGTAAAACACCCCAAATTTTCTGAAATGTTGACCTCGGATCAGGTAGGA Hypocrea_pseudokoningii_EU280097 CCGAGTTTACAACTCCCAAACCC-AATGTGAACGTTACCAATCTGTTGCCTCGGCGGGAT-----CTCT-GCCCCGGGCGCGTCGCAGCCCCGGACCCCATGGCGCCCGCCGGAGGACCAAC-C-AAACTCTTTTT-TCTCTCCGTCGCGGCCTACGTCGCGGCTCTGTTTTATTTT-GCTCTGAGCCTTTCTCGGCGACCCTAGCGGGCGTCTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGC---CCCTCA--C-CGGG--CCGCCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGGCC-ACAGCCGTAAAACACCCCAAACT--CTGAAATGTTGACCTCGGATCAGGTAGGA Hypocrea_sp._FNBR6 CCGAGTTTACAACTCCCAAACCCCAATGTGAACGTTACCAATCTGTTGCCTCGGCGGGATT----CTCTTGCCCCGGGCGCGTCGCAGCCCCGGATCCCATGGCGCCCGCCGGAGGACCAACTCCAAACTCTTTTT-TCTCTCCGTCGCGGCTCCCGTCGCGGCTCTGTTTTATTTTTGCTCTGAGCCTTTCTCGGCGACCCTAGCGGGCGTCTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGC---CCCTCA--C-CGGG--CCGCCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGGCC-ACAGCCGTAAAACACCCCAAACT-TCTGAAATGT???????????????????? Trichoderma_aggressivum_FJ442607 CCGAGTTTACAACTCCCAAACCCAA-TGTGAACGCTACCAAACTGTTGCCTCGGCGGGAT-----CTC-TGCCCCGGGCGCGTCGCAGCCCCGGA--CCAAGGCGCCCGCCGGAGGACCAACCCAAAACTCTTATT-----------GTATACCCCCTCGCGGGTTATTTTT--ACT--ATCTGAGCCTT-CTCGGCGCCCCTCGTGGGCGTTTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGCCCTCCCTC---GCGGG-GGCCGTCTCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGTCC-ACAGCCGTTAAACACCC--AACT-TCTGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_asperellum_AY380912 CCGAGTTTACAACTCCCAAACCCA-ATGTGAACGTTACCAAACTGTTGCCTCGGCGGGG-------TCACGCCCCGGGTGCGTCGCAGCCCCGGA--ACCAGGCGCCCGCCGGAGGAACCAAC-CAAACTCTTT-C----------TGTAGTCCCC-TCGCGGACGTATTTCT------TTACA-------------GCTCTGAGCAAAAATTC--AAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGAT-CGGGACCCCTCAC--ACGGGTGCCGGCCCCTAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCC-ACGTCCGTAAAACACCC--AACTTTCTGAAATG????????????????????? Trichoderma_citrinoviride_EU280098 CCGAGTTTACAACTCCCAAACCC-AATGTGAACGTTACCAATCTGTTGCCTCGGCGGGATT----CTCT-GCCCCGGGCGCGTCGCAGCCCCGGATCCCATGGCGCCCGCCGGAGGACCAACTC-AAACTCTTTTT-TCTCTCCGTCGCGGCCTACGTCGCGGCTCTGTTTTATTTTTGCTCTGAGCCTTTCTCGGCGACCCTAGCGGGCGTCTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGC---CCCTCA--C-CGGG--CCGCCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGGCC-ACAGCCGTAAAACACCCCAAACT--CTGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_croceum_DQ083026 CCGAGTTTACAACTCCCAAACCCCTATGTGAACGTTA?CAAAATGTTGCCTCGGCGGGGAATTTATTCATGCCCCGGGCGCGTCGCAGCCCCGGA--CCAAGGCGCCCGCCGGAGGACCAACC-AAAACTCTTTTG----------TAT-GTCCCC-TCGCGGACTTTTATAA------TTCTGAACCAT-CTCGGCGCCCCTTGCGGGCGTTTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGTACGGCGTTGGGGAT---CGGCCCTTTA---CGGGG--CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCATCGGGAGCGCGGCGCGTCC-ACGTCCGTAAAACACCC--AACTT-CTGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_effusum_AF149858 ???????????????????????????GTGAACGTTACCAATCTGTTGCCTCGGCGGGAT-----CTCT-GCCCCGGGCGCGTCGCAGCCCCGGATCCCATGGCGCCCGCCGGAGGACCAAC--CAAACTCTTTTT-TCTCTCCGTCGCGGCCCTCGTCGCGGCTCTGTTTTACTTTTGCTCTGAGCCTTTCTCGGCGACCCTAGCGGGCGTCTCGAAAATGAATCAAAACTTT------CA??????????????????ATGCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGC---CCCTCA--C-CGGG--CCGCCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGGCC-ACAGCCGTAAAACACCCCAAAC--TCTGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_fasciculatum_DQ087258 CCGAGTTTACAACTCCCAAACCCCG-TGTGAACGTTACCAACCTGTTGCCTCGGCGGGAT-----CTC-TGCCCCGGGCGCGTCGCAGCCCCGGA--CCAAGGCGCCCGCCGGAGGACCAACC-AAAAACCCT--T-----------GTATGCCCC-TCGCGGGTTTTTTTTA-ACT--GTCTGAGCCAT-CTCGGCGCCCCTCGCGGGCGTTTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAGCCCCCCCGGGGGGTCGGCGTTGGGGATCGGCC---CTTT---ACCGG---CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCAGCCCAATGCCGTAAAACACCC-AACTT-TCCGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_fertile_DQ083018 CCGAGTTTACAACTCCCAAACCCCG-TGTGAACGTTACCAACCTGTTGCCTCGGCGGGAT-----CTC-TGCCCCGGGCGCGTCGCAGCCCCGGA--CCAAGGCGCCCGCCGGAGGACCAACC-AAAAACCCT--T-----------GTATGCCCC-TCGCGGGTTTTTTTTA-ACT--GTCTGAGCCAT-CTCGGCGCCCCTCGCGGGCGTTTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAGCCCCCCCGGGGGGTCGGCGTTGGGGATCGGCC---CTTT---ACCGG---CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCAGCCCAATGCCGTAAAACACCC-AACTT-TCCGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_ghanense_Z69588 CGGAGTTTACAACTCCCAAACCCCAATGTGAACGTTACCAATCTGTTGCCTCGGCGGGAT-----CTCT-GCCCCGGGCGCGTCGCAGCCCCGGATCCCATGGCGCCCGCCGGAGGACCAAC-C-AAACTCTTTTT-TCTCTCCGTCGCGGCTTCCGTCGCGGCTCTGTTTTAACTTTGCTCTGAGCCTTTCTCGGCGACCCTAGCGGGCGTCTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGCACGCCCTCA--CACGGGTGCCGGCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGGCC-ACAGCCGTAAAACACCCCAAACT-TCTGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_inhamatum_FJ442680 CCGAGTTTACAACTCCCAAACCCAA-TGTGAACGTTACCAAACTGTTGCCTCGGCGGGAT-----CTC-TGCCCCGGGTGCGTCGCAGCCCCGGA--CCAAGGCGCCCGCCGGAGGACCAACC-AAAACTCTTATT-----------GTATACCCCCTCGCGGGTTTTTTTT--ATA--ATCTGAGCCTT-CTCGGCGCCTCTCGTAGGCGTTTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGCCCTCCCTTA--GCGGG-GGCCGTCTCCGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCATCGGGAGCGCGGCGCGTCC-ACAGCCGTTAAACACCC--AACT-TCTGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_konilangbra_AF400261 ?????????????????AAACCCCAATGTGAACGTTACCAATCTGTTGCCTCGGCGGGAT-----CTCTTGCCCCGGGCGCGTCGCAGCCCCGGACCCCATGGCGCCCGCCGGAGGACCAAC--CAAACTCTTTTT-TCTCTCCGTCGCGGCTCCCGTCGCGGCTCTGTTTTA-TTTTGCTCTGAGCCTTTCTCGGCGACCCTAGCGGGCGTCTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGA?CCCCTCCGGGGGGTCGGCGTTGGGGATCGGC---CCCTCA--C-CGGG--CCGCCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGGCC-ACAGCCGTAAAACACCCCAAACT-TCTGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_longibrachiatum_EU401556 ???????????????????????????GTGAACGTTAC-AATCTGTTGCCTCGGCGGGATT----CTCTTGCCCCGGGCGCGTCGCAGCCCCGGATCCCATGGCGCCCGCCGGAGGACCAACTCCAAACTCTTTTTTTCTCTCCGTCGCGGCTCCCGTCGCGGCTCTGTTTTATTTTTGCTCTGAGCCTTTCTCGGCGACCCTAGCGGGCGTCTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGC---CCCTCA--C-CGGG--CCGCCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGGCC-ACAGCCGTAAAACACCCCAAACT-TCTGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_longipile_AY865630 CCGAGTTTACAACTCCCAAACCCAA-TGTGAACGTTACCAAACTGTTGCCTCGGCGGGAT-----CTC-TGCCCCGGGTGCGTCGCAGCCCCGGA--CCAAGGCGCCCGCCGGAGGACCAACC-AAAACTCTTTAT-----------GTATACCCCCTCGCGGGTTTTTTACA------ATCTGAGCCAT-CTCGGCGCCCCTCGTGGGCGTTTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGCC---CTTT---ACGGG-G-CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCATCGGGAGCGCGGCGCGTCC-ATTGCCGTAAAACACCC-AACTT-TCTGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_oblongisporum_AF414319 CCGAGTTTACAACTCCCAAACCCCTATGTGAACGTTACCAAACTGTTGCCTCGGCGGGAAAATT-TCATCGCCCCGGGCGCGTCGCAGCCCCGGA--ACCAGGCGCCCGCCGGAGGACCAACC-AAAACTCTTTTG----------TAT-GTCCCC-TCGCGGACTTTTATTA------TTCTGAACCAT-CTCGGCGCCCCTAGCGGGCGTTTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGTCCGGCGTTGGGGAT---CGGCCCTTTA---CGGGG--CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGTCC-ACGTCCGTAAAACACCC--AACTT-CTGAAATG????????????????????? Trichoderma_parceramosum_AF414299 CCGAGTTTACAACTCCCAAACCCCAATGTGAACGTTACCAATCTGTTGCCTCGGCGGGAT-----CTCT-GCCCCGGGCGCGTCGCAGCCCCGGATCCCATGGCGCCCGCCGGAGGACCAAC-C-AAACTCTTTTT-TCTCTCCGTCGCGGCTTCCGTCGCGGCTCTGTTTTAACTTTGCTCTGAGCCTTTCTCGGCGACCCTAGCGGGCGTCTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGCACGCCCTCA--CACGGGTGCCGGCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGGCC-ACAGCCGTAAAACACCCCAAACT-TCTGAAATG????????????????????? Trichoderma_pseudokoningii_Z31014 CCGAGTTTACAACTCCCAAACCC-AATGTGAACGTTACCAATCTGTTGCCTCGGCGGGAT-----CTCT-GCCCCGGGCGCGTCGCAGCCCCGGACCCCATGGCGCCCGCCGGAGGACCAAC-C-AAACTCTTTTT-TCTCTCCGTCGCGGCCTACGTCGCGGCTCTGTTTTATTTT-GCTCTGAGCCTTTCTCGGCGACCCTAGCGGGCGTCTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGC---CCCTCA--C-CGGG--CCGCCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGGCC-ACAGCCGTAAAACACCCCAAACT--CTGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_pubescens_EU280121 CCGAGTTTACAACTCCCAAACCCA-ATGTGAACGTTACCAAACTGTTGCCTCGGCGGGG-------TCACGCCCCGGGTGCGTAAAAGCCCCGGA--ACCAGGCGCCCGCCGGAGGAACCAAC-CAAACTCTTT-C----------TGTAGTCCCC-TCGCGGACGTTATTTC------TTACA-------------GCTCTGAGCAAAAATTC--AAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGAT-CGGGACCCCTCA---CCGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCC-ACGTCCGTAAAACACCC--AACTTTCTGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_saturnisporum_AF414295 CCGAGTTTACAACTCCCAAACCCCAATGTGAACGTTACCAATCTGTTGCCTCGGCGGGAT-----CTCT-GCCCCGGGCGCGTCGCAGCCCCGGATCCCATGGCGCCCGCCGGAGGACCAACTC-AAACTCTTTTT-TCTCTCCGTCGCGGCTTCCGTCGCGGCTCTGTTTTATTTTTGCTCTGAGCCTTTCTCGGCGACCCTAGCGGGCGTCTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGC---CCCTCA--C-CGGG--CCGCCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGGCC-ACAGCCGTAAAACACCCCAAACT--CTGAAATG????????????????????? Trichoderma_saturnisporum_Z48726 CCGAGTTTACAACTCCCAAACCCCAATGTGAACGTTACCAATCTGTTGCCTCGGCGGGAT-----CTCTTGCCCCGGGCGCGTCGCAGCCCCGGATCCCATGGCGCCCGCCGGAGGACCAACTC-AAACTCTTTTT-TCTCTCCGTCGCGGCTTCCGTCGCGGCTCTGTTTTATTTTTGCTCTGAGCCTTTCTCGGCGACCCTAGCGGGCGTCTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGC---CCCTCA--C-CGGG--CCGCCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGGCC-ACAGCCGTAAAACACCCCAAACT--CTGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_sinensis_AF486014 ?????????????????AAACCCACCTGTGAACGTTACCAATCCGTTGCCTCGGCGGGAT-----CTCTTGCCCCGGGCGCGTCGCAGCCCCGGATCCCATGGCGCCCGCCGGAGGACCAAC--CAAACTCTTTCTCTCTCTCCGTCGCGGCTCCCGTCGCGGCTCTGTTTTATTTTTGCTCTGAGCCTTTCTCGGCGACCCTAGCGGGCGTCTCGAAAATGAATCAAAACTTTAACTTTCAACAACGGATCTCTTGGTTATGCTCTTGGTTCTGGCATCGATGAAGAAGGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCC?????TCATTTCTTCAACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGC---CCCTCA--C-CGGG--CCGCCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTCCTCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGGCC-ACAGCCGTAAAACACCCCAAACC-TCTGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_sp_AJ507135 CCGAGTTTACAACTCCCAAACCCCAATGTGAACGTTACCAATCTGTTGCCTCGGCGGGAT-----CTCT-GCCCCGGGCGCGTCGCAGCCCCGGATCCCATGGCGCCCGCCGGAGGACCAAC-C-AAACTCTTTTTCTCTCTCCGTCGCGGCT-CCGTCGCGGCTCTGTTTTATTTTTGCTCTGAGCCTTTCTCGGCGACCCTAGCGGGCGTCTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGCC--CCCTCA--C-CGGG-GCCGCCCCCGAAATCCAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCGGCC-ACAGCCGTAAAACACCCCAAACT-TCTGAAATG????????????????????? Trichoderma_spirale_EU280068 CCGAGTTTACAACTCCCAAACCCAA-TGTGAACGTTACCAAACTGTTGCCTCGGCGGGAT-----CTC-TGCCCCGGGTGCGTCGCAGCCCCGGA--CCAAGGCGCCCGCCGGAGGACCAACC-AAAACTCTTT-T-----------GTATACCCCCTCGCGGGTTTTTAT--------ATCTGAGCCAT-CTCGGCGCCTCTCGTAGGCGTTTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGCC---CTTT---ACGGG-G-CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCATCGGGAGCGCGGCGCGTCC-ATTGCCGTAAAACACCC-AACTT-TCTGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_strictipilis_AF400263 ????????????????????????A-TGTGAACGTTACCAACCTGTTGCCTCGGCGGGAT-----CTC-TGCCCCGGGCGCGTCGCAGCCCCGGA--CCAAGGCGCCCGCCGGAGGACCAACC-AAAAACCCT--T-----------GTATGCCCCCTCGCGGGTTTTTTTTT-ACT--GTCTGAGCCAT-CTCGGCGCCCCTCGCGGGCGTTTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAGCCCCCCCGGGGGGTCGGCGTTGGGGATCGGCC---CTTT---ACCGG---CCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCACCGGGAGCGCGGCGCAGCC-AATGCCGTAAAACACCC-AACTT-TCCGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_strigosum_EU280120 CCGAGTTTACAACTCCCAAACCCA-ATGTGAACGTTACCAAACTGTTGCCTCGGCGGGG-------TCACGCCCCGGGCGCGTCGCAGCCCCGGA--ACCAGGCGCCCGCCGGAGGAACCAAC-CAAACTCTTTAC----------TGTAGTCCCC-TCGCGGACGTTTTTAC------TTACA-------------GCTCTGAGCAAAAATTC--AAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATGCGGGAACCCCTAAGACGGGATCCCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCC-ACGTCCGTAAAACACCC--AACTTTCTGAAATGTTGACCTCGGATCAGGTAGGA Trichoderma_tomentosum_AF414323 CCGAGTTTACAACTCCCAAACCCAA-TGTGAACGTTACCAAACTGTTGCCTCGGCGGGAA-----CTCATGCCCCGGGTGCGTCGCAGCCCCGGA--CCAAGGCGCCCGCCGGAGGACCAACC-AAAACTCTTTTT-----------GTATACCCCCTCGCGGGTTTTTT----ATA--ATCTGAGCCTT-CTCGGCGCCTCTCGTAGGCGTTTCGAAAATGAATCAAAACTTT------CAACAACGGATCTCTTGGTT------------CTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTC---AACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGCC-TCCCTCT--GCGGG-GGCCGTCTCCGAAATACAGTGGCGGTCTCGCCGCAGCCTC-TCCTGCGCAGTAGTTTGCACA-CTCGCATCGGGAGCGCGGCGCGTCC-ACAGCCGTTAAACACCC--AACT-TCTGAAATG????????????????????? ; END; [ The following blocks are output data for analysis step 8601 ] BEGIN TREES; TITLE FNBR6_ITS; LINK TAXA = TaxaForAnalysisStep8601; TREE NJT = [&R] ((Trichoderma_croceum_DQ083026:0.00822244,((Hypocrea_minutispora_AY865634:0.00194976,Trichoderma_oblongisporum_AF414319:0.0)0.9900:0.00922394,(Trichoderma_strigosum_EU280120:0.01480818,(Trichoderma_asperellum_AY380912:0.01072819,Trichoderma_pubescens_EU280121:0.01154821)0.9200:0.00609849)1.0000:0.08129055)0.4600:0.01041031)0.9700:0.023025375,(((Hypocrea_crassa_EU280067:0.00322218,(Trichoderma_aggressivum_FJ442607:0.0111909,(Trichoderma_inhamatum_FJ442680:0.0,(Trichoderma_tomentosum_AF414323:0.00812842,Hypocrea_lixii_AY605713:0.0)0.3700:0.0)0.9000:0.01135177)0.7700:0.01211352)0.5600:0.00556335,((Trichoderma_spirale_EU280068:0.00659901,Trichoderma_longipile_AY865630:0.00276319)0.7600:0.00748981,(Hypocrea_ceramica_FJ860743:0.00647313,(Trichoderma_strictipilis_AF400263:0.00211434,(Trichoderma_fasciculatum_DQ087258:0.0,Trichoderma_fertile_DQ083018:0.0)0.4600:0.00220481)1.0000:0.02805644)0.7000:0.01234607)0.4400:0.00828862)0.7400:0.01632317,((Trichoderma_ghanense_Z69588:0.00185301,Trichoderma_parceramosum_AF414299:0.0)0.6300:0.00465658,(Hypocrea_jecorina_AF414296:1.7E-7,(Hypocrea_sp._FNBR6:0.0,(Hypocrea_orientalis_X93964:0.00373958,(Trichoderma_longibrachiatum_EU401556:0.0,(Trichoderma_konilangbra_AF400261:0.00199147,(Trichoderma_sinensis_AF486014:0.01388109,((Hypocrea_novaezelandiae_X93969:0.01420992,(Trichoderma_saturnisporum_Z48726:0.0,(Trichoderma_sp_AJ507135:0.0,Trichoderma_saturnisporum_AF414295:0.0)0.0700:0.0)0.0700:0.0)0.0000:0.0,(Trichoderma_effusum_AF149858:0.00614907,(Trichoderma_citrinoviride_EU280098:0.00192212,(Trichoderma_pseudokoningii_Z31014:0.0,Hypocrea_pseudokoningii_EU280097:0.0)0.7600:0.00195905)0.5700:0.0)0.4000:0.00374111)0.0000:0.00196826)0.0000:0.0)0.0500:0.00390741)0.0000:0.0)0.0000:0.0)0.0300:0.00616709)0.3400:0.00264232)1.0000:0.06996518):0.023025375); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr50956] END;