#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 05, 2024; 11:14 GMT

TreeBASE (cc) 1994-2008

Study reference:
Milani N.A., Lawrence D.P., Arnold A., & Vanetten H. 2011. Inheritance of Pisatin
Demethylase (PDA) among the Fusaria and closely related taxa. Fungal Genetics and
Biology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S12103]

[ The following blocks are input data for analysis step 8605 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep8605;
        DIMENSIONS NTAX=23;
        TAXLABELS
            Fusarium_oxysporum_f._sp._glycines
            Fusarium_oxysporum_f._sp._phaseoli
            Fusarium_oxysporum_f.sp._dianthi
            Fusarium_oxysporum_f.sp._lini
            Fusarium_oxysporum_f.sp._pisi_DB
            Fusarium_oxysporum_f.sp._pisi_F105
            Fusarium_oxysporum_f.sp._pisi_F184
            Fusarium_oxysporum_f.sp._pisi_F202
            Fusarium_oxysporum_f.sp._pisi_F28
            Fusarium_oxysporum_f.sp._pisi_F40
            Fusarium_oxysporum_f.sp._pisi_T247
            Nectria_haematococca_156306
            Nectria_haematococca_196107
            Nectria_haematococca_24111
            Nectria_haematococca_5551
            Nectria_haematococca_6222
            Nectria_haematococca_9617
            Nectria_haematococca_DB
            Neocosmospora_boninensis
            Neocosmospora_tenuicristata_22155
            Neocosmospora_vasinfecta_22425
            Neocosmospora_vasinfecta_22527
            Neocosmospora_vasinfecta_ATCC
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M11597]

	TITLE Fusarium_bt;
	LINK TAXA = TaxaForAnalysisStep8605;
	DIMENSIONS NCHAR=339;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                              10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         ]
[                                               .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         ]
Fusarium_oxysporum_f._sp._glycines     GGTAACCAAATCGGTGCTGCTTTCTGGCAAACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGAGCTCCAGCTCGAGCGCATGAGTGTCTACTTCAACGAGGTATGCATTAACAGTCAATGTCAAGAATTCCCAAGCTCACACAACTAGGCCTCTGGCAACAAGTATGTTCCCCGAGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGTCAGTCCGGTGC-------------------------------------
Fusarium_oxysporum_f._sp._phaseoli     GGTAACCAAATCGGTGCTGCTTTCTGGCAAACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGAGCTCCAGCTCGAGCGCATGAGTGTCTACTTCAACGAGGTACGCATTAACAGTCAATGTCAAGAATTCCCAAGCTCACACAACTAGGCCTCTGGCAACAAGTATGTTCCCCGAGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGCCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Fusarium_oxysporum_f.sp._dianthi       GGTAACCAAATCGGTGCTGCTTTCTGGCAAACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGAGCTCCAGCTCGAGCGCATGAGTGTCTACTTCAACGAGGTATGCATTAACAGTCAATGTCAAGAATTCCCAAGCTCACACAACTAGGCCTCTGGCAACAAGTATGTTCCCCGAGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGCCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Fusarium_oxysporum_f.sp._lini          GGTAACCAAATCGGTGCTGCTTTCTGGCAAACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGAGCTCCAGCTCGAGCGCATGAGTGTCTACTTCAACGAGGTATGCATTAACAGTCAATGTCAAGAATTCCCAAGCTCACACAACTAGGCCTCTGGCAACAAGTATGTTCCCCGAGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGCCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Fusarium_oxysporum_f.sp._pisi_DB       GGTAACCAAATCGGTGCTGCTTTCTGGCAAACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGAGCTCCAGCTCGAGCGCATGAGTGTCTACTTCAACGAGGTATGCATTAACAGTCAATGTCAAGAATTCCCAAGCTCACACAACTAGGCCTCTGGCAACAAGTATGTTCCCCGAGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGCCACTACACTGAGGGT
Fusarium_oxysporum_f.sp._pisi_F105     GGTAACCAAATCGGTGCTGCTTTCTGGCAAACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGAGCTCCAGCTCGAGCGCATGAGTGTCTACTTCAACGAGGTATGCATTAACAGTCAATGTCAAGAATTCCCAAGCTCACACAACTAGGCCTCTGGCAACAAGTATGTTCCCCGAGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGCCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Fusarium_oxysporum_f.sp._pisi_F184     GGTAACCAAATCGGTGCTGCTTTCTGGCAAACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGAGCTCCAGCTCGAGCGCATGAGTGTCTACTTCAACGAGGTATGCATTAACAGTCAATGTCAAGAATTCCCAAGCTCACACAACTAGGCCTCTGGCAACAAGTATGTTCCCCGAGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGCCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Fusarium_oxysporum_f.sp._pisi_F202     GGTAACCAAATCGGTGCTGCTTTCTGGCAAACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGAGCTCCAGCTCGAGCGCATGAGTGTCTACTTCAACGAGGTATGCATTAACAGTCAATGTCAAGAATTCCCAAGCTCACACAACTAGGCCTCTGGCAACAAGTATGTTCCCCGAGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGCCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Fusarium_oxysporum_f.sp._pisi_F28      GGTAACCAAATCGGTGCTGCTTTCTGGCAAACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGAGCTCCAGCTCGAGCGCATGAGTGTCTACTTCAACGAGGTATGCATTAACAGTCAATGTCAAGAATTCCCAAGCTCACACAACTAGGCCTCTGGCAACAAGTATGTTCCCCGAGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGCCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Fusarium_oxysporum_f.sp._pisi_F40      GGTAACCAAATCGGTGCTGCTTTCTGGCAAACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGAGCTCCAGCTCGAGCGCATGAGTGTCTACTTCAACGAGGTATGCATTAACAGTCAATGTCAAGAATTCCCAAGCTCACACAACTAGGCCTCTGGCAACAAGTATGTTCCCCGAGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGAAACAATTGGGCCAAGGGTCACTACACTGAGGGT
Fusarium_oxysporum_f.sp._pisi_T247     GGTAACCAAATCGGTGCTGCTTTCTGGCAAACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGAGCTCCAGCTCGAGCGCATGAGTGTCTACTTCAACGAGGTATGCATTAACAGTCAATGTCAAGAATTCCCAAGCTCACACAACTAGGCCTCTGGCAACAAGTATGTTCCCCGAGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGCCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Nectria_haematococca_156306            GGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACAGCAATGGTGTTTACAACGGCACCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTATG--TTGTCCGGCAGCTGTGCCAAATCT--AGCTGACATTTGTAGGCCTCTGGCAACAAGTACGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTTCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTCTTCGGTCAGTCCGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Nectria_haematococca_196107            GGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACAGCAATGGTGTTTACAACGGCACCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTATG--TTGTCCGGTAGCTGTGCGAAATCT--AGCTGACATTTGTAGGCCTCTGGCAACAAGTACGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTTCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTCTTCGGTCAGTCCGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Nectria_haematococca_24111             GGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACAGCAATGGTGTTTACAACGGCACCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTATG--TTGTCCGGCAGCTGTGCCAAATCT--AGCTGACATTTGTAGGCCTCTGGCAACAAGTACGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTTCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTCTTCGGTCAGTCCGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Nectria_haematococca_5551              GGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACAGCAATGGTGTTTACAACGGCACCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTATG--TTATCCGGCAGCTGTGCCAAATCT--AGCTGACATTTGTAGGCCTCTGGCAACAAGTACGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTTCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTCTTCGGTCAGTCCGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Nectria_haematococca_6222              GGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACAGCAATGGTGTTTACAACGGCACCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTATG--TTGTCCGGCAGCTGTGCCAAATCT--AGCTGACATTTGTAGGCCTCTGGCAACAAGTACGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTTCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTCTTCGGTCAGTCCGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Nectria_haematococca_9617              GGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACAGCAATGGTGTTTACAACGGCACCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTATG--TTATCCGGCAGCTGTGCCAAATCT--AGCTGACATTTGTAGGCCTCTGGCAACAAGTACGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTTCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTCTTCGGTCAGTCCGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Nectria_haematococca_DB                GGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACAGCAATGGTGTTTACAACGGCACCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTATG--TTGTCCGGTAGCTGTGCGAAATCT--AGCTGACATTTGTAGGCCTCTGGCAACAAGTACGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTTCGTGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTCTTCGGTCAGTCCGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Neocosmospora_boninensis               GGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACAGCAATGGTGTCTACAACGGCACTTCCGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTATG--TTGCCCGAAGCTTATGCCAAACCC--GGCTGACATCTGTAGGCCTCTGGCAACAAGTACGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCTGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTCTTCGGTCAGTCCGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Neocosmospora_tenuicristata_22155      GGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACAGCAATGGTGTCTACAACGGCACTTCCGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTATG--TTGCCCGAAGCTTATGCCAAACCC--GGCTGACATCTGTAGGCCTCTGGCAACAAGTACGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCTGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTCTTCGGTCAGTCCGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Neocosmospora_vasinfecta_22425         GGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACAGCAATGGTGTCTACAACGGCACTTCCGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTATG--TTGCCCGAAGCTTATGCCAAACCC--GGCTGACATCTGTAGGCCTCTGGCAACAAGTACGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCTGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTCTTCGGTCAGTCCGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Neocosmospora_vasinfecta_22527         GGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACAGCAATGGTGTCTACAACGGCACTTCCGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTATG--TTGCCCGAAGCTTATGCCAAACCC--GGCTGACATCTGTAGGCCTCTGGCAACAAGTACGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCTGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTCTTCGGTCAGTCCGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGGGT
Neocosmospora_vasinfecta_ATCC          GGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACAGCAATGGTGTCTACAACGGCACTTCCGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTATG--TTGCCCGAAGCTTATGCCAAACCC--GGCTGACATCTGTAGGCCTCTGGCAACAAGTACGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCTGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTCTTCGGTCAGTCCGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGGGT
;
END;

[ The following blocks are output data for analysis step 8605 ]
BEGIN TREES;
      TITLE bt_consensus;
      LINK TAXA = TaxaForAnalysisStep8605;
      TREE PAUP_1 = [&R] ((Fusarium_oxysporum_f.sp._pisi_F40:0.002897,Fusarium_oxysporum_f.sp._pisi_DB:0.002922,Fusarium_oxysporum_f._sp._glycines:0.0,(Fusarium_oxysporum_f.sp._pisi_F28:0.0,Fusarium_oxysporum_f.sp._pisi_F184:0.0,Fusarium_oxysporum_f.sp._pisi_F202:0.0,Fusarium_oxysporum_f.sp._pisi_F105:0.0,Fusarium_oxysporum_f.sp._pisi_T247:0.0,Fusarium_oxysporum_f._sp._phaseoli:0.002924,Fusarium_oxysporum_f.sp._lini:0.0,Fusarium_oxysporum_f.sp._dianthi:0.0):0.002952):0.0870525,((Neocosmospora_boninensis:0.0,Neocosmospora_vasinfecta_ATCC:0.0,Neocosmospora_vasinfecta_22425:0.0,Neocosmospora_vasinfecta_22527:0.0,Neocosmospora_tenuicristata_22155:0.0):0.05682,(Nectria_haematococca_9617:0.00299,Nectria_haematococca_6222:0.0,Nectria_haematococca_5551:0.00299,Nectria_haematococca_156306:0.0,Nectria_haematococca_24111:0.0,(Nectria_haematococca_DB:0.0,Nectria_haematococca_196107:0.0):0.006083):0.0):0.0870525);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr50969]


END;