#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 18, 2025; 7:34 GMT TreeBASE (cc) 1994-2008 Study reference: An K., Degawa Y., Fujihara E., Mikawa T., Ohkuma M., & Okada G. 2012. Molecular phylogenetic analyses based on the nuclear rRNA genes and the intron-exon structures of the nuSSU rRNA gene in Dictyocatenulata alba (anamorphic Ascomycota). Fungal Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S12343] [ The following blocks are input data for analysis step 8620 ] BEGIN TAXA; TITLE TaxaForAnalysisStep8620; DIMENSIONS NTAX=36; TAXLABELS Acarospora_smaragdula_AY853354 Acarosporina_microspora_AY584643 Agyrium_rufum_EF581826 Belonia_herculana_FJ941886 Belonia_russula_FJ941887 Botryosphaeria_melanops_DQ377856 Calicium_viride_AY453638 Caloplaca_regalis_EU161240 Carestiella_socia_AY661682 Cladonia_rangiferina_AY300832 Coenogonium_pineti_AY300834 Conotrema_urceolatum_AY661686 Cryptodiscus_foveolaris_AY661683 Cryptodiscus_microstomus_FJ904676 Cryptodiscus_pini_FJ904681 Dictyocatenulata_alba_12918 Dictyocatenulata_alba_5358 Dictyocatenulata_alba_5359 Dictyocatenulata_alba_5360 Dictyocatenulata_alba_8401 Furcaspora_eucalypti_EF110613 Glyphis_cicatricosa_AY640025 Graphina_peplophora_DQ431930 Gyalecta_ulmi_AF465463 Lecanora_muralis_DQ787339 Melanops_tulasnei_FJ824765 Ostropa_barbara_HM244773 Phaeographis_caesioradians_AY640021 Phyllobaeis_erythrella_DQ986780 Sarcoleotia_globosa_AY789409 Sphinctrina_turbinata_EF413632 Stictis_radiata_AY340575 Trapelia_placodioides_AF274103 Trapeliopsis_flexuosa_AF274118 Umbilicaria_calvescens_HM161523 Umbilicaria_nylanderiana_HM161543 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M11604] TITLE 'lsu-Matrix'; LINK TAXA = TaxaForAnalysisStep8620; DIMENSIONS NCHAR=459; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Acarospora_smaragdula_AY853354 GAACAGGACGTCACAGAGGGTGAGAATCCCGTACGTGACCGGCCGCC-ACGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCCAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCC-CGCGGGTGATCAGCCGGTATTC--------TTACCGGTGCACTCGCCCGTGGTCAGGCCAGCATCGGTTTGGGCGGCTGGACAAAGGCCTCCGGAATGTAGCTCCTCTC----GGGGAGTGTTATAGCCGGGGGTGCAATGCAGCCAGCCCGGACCGAGGACCGCGCTTCG---GCTAGGATGCTGGCGTAATGGTTG-TAAGCGACC Acarosporina_microspora_AY584643 GAACAGGGCGTCATAGAGGGTGAGAATCCCGTACGTGACCGGTCGCC-TAGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCTGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTCGCC-GCGGGGTGATCATCCGTCCTTC--------GGGGCGGTGCACTCTCCCCGTGGCGGGCCAGCATCGGTTCGGGCGGCGGGAAAAAGTCTCTGGGAATGTAGCTCCCCTC----GGGGAGTGTTATAGCCCGGGGCGTCATGCCGCCAGCCTGGACCGAGGACCGCGCTTT---TGCTAGGATGCTGGCATAATGGTTG-TCAGCGACC Agyrium_rufum_EF581826 GAACAGGGCGTCATGGAGGGTGAGAATCCCGTCTGCGGCCGGTGGTC-AAGTTCATGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTGAAAGGGAAGCGCTTGCGATCAGACTTGCA-CCAGGGTGATCAACCGACCTTC--------TGGCCGGTGCACTCGCCCTGGTTCAGGCCAGCATCGGTCTGGGCGGTCGGATAACAGTCGGAGGAATGTGGCTCCCTTC----GGGGAGTGTTATAGCCCCCGACACAATGCGACCAGCCCGGACCGAGGACCGCGCTTC---GGCTAGGATGCTGGCGTAATGGTCG-TAAGCGACC Belonia_herculana_FJ941886 GAACGGTGCGTCATAGAGGGTGAGAATCCCGTATGCGACCGCCAGTC-AAACCGATGCGAGGCCCTTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCATGTGAAATTGTTGAAGGGGAAG{CG}GCTTGCAACCAGACTCGTTTCGCGGGTGATCAACCTTTTTCCCTTTCGGGGGGCTGGTGCACTCATCCGCAATCGGGCCAGCATCGATTTCGGCCGTCGGAAGAAGGTTTGGGGAACGTAGCTCTCTCC----GGGGAGTGTTATAGCCCCTTTCGTAATGCGGCGAGTCGGGATCGAGGACCGCGCCTTTTTTGCTAGGATGCTGGCGTAATGGTTG-CCAGCGACC Belonia_russula_FJ941887 CAACGGGGCGTCATAGAGGGTGAGAATCCCGTACGCGACCGCCCGCC-AACTCGATGCGAGGCCCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTATGTGAAATTGTTGAAGGGGAAGCGCTTGCAACCAGACTCGCC-CGCGGGTGATCAGCCTCCCTCC--------GGGGTGGTGCACTCATCCGCGATCGGGCCAGCATCGGTTTCGACCGCCGGAAGAAGGCTCGGGGAACGTAGCTCCCTCC----GGGGAGTGTTATAGCCCCTTGCGCAATGCGGCGTGCCGGGACCGAGGACCGCGCGTAT---GCAAGGATGCTGGCGTAATGGTTG-CCAGCGACC Botryosphaeria_melanops_DQ377856 GAACAGGACGTCATAGAGGGTGAGAATCCCGTATGCGATGGGTTGCCCGAGCC-ATGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTCGTC-CGCAGTTGCTCAGCCGGTCTCC--------TGACCGGTGTACTCTTCTGCGGCCGGGCCAGCATCGGTTCGGGCGGTCGGATAAAGGCCCCGGGAATGTAGCTCCTCTC----GGGGAGTGTTATAGCCCGGGGCGGAATGCGGCCAGCCCGGACCGAGGATCTCGCTTCG---GCTAGGATGCTGGCGTAATGGCTG-TAAGCGGCC Calicium_viride_AY453638 GAACAGGGCGTCATAGAGGGTGAGAATCCCGTATGCGGCCGGTGACC-GGACCCATGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTATATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACCTGTC-GTCGGGTGATCAGCCGTCGTTC--------TCGGCGGTGCACTCGCCCGTGCGCAGGCCAGCATCGGTTCGGGAGGTTGGATAAAGGCCCCGGGAATGTAGCTTCCTTC----GGGGAGTCTTATAGCCCGGGGTGCAATGCGGCCAGCCCGGACCGAGGACCGCGCTTCG---GCAAGGATGCTGGCGTAATGGTCG-TAAGCGGCC Caloplaca_regalis_EU161240 GAACGGGGCGTCACAGAGGGTGAGAATCCCGTACGTGACCGGTGACC-GAGTCCATGTGAAACTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAATGGAAGCGCTTGCAACCAGACCTGCC-CGCGGGTGATCAGCCGTCCTTC--------TGGGCGGTGCACTCGCCCGCGATCAGGCCAGCATCGGTTCGGGCGGCCGGATAAAGGCCCTGGGAACGTAGCTCCCCTC----GGGGAGTGTTATAGCCCTCGGTGCAATGCGGCCCGCCTGGACCGAGGACCGCGCTTCG---GCTAGGATGCTGGCGTAATGGTTG-TAAGCGGCC Carestiella_socia_AY661682 GAACAGGGCGTCATAGAGGGTGAGAATCCCGTACGTGACCGGTGTCC-GACCCCATGTGAAACTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTCGCC-CGGGGGTGATCAGCCGTCCTTT--------TGGGCGGTGCACTCTCCCCCGGTCGGGCCAGCATCGGTTTGGGCGGCTGGATAAAGGCCTCGGGAACGTAGCTCCTCTC----GGGGAGTGTTATAGCCCGGGGTGCAATGCAGTCAGCCTGGACCGAGGACCGCGCTTTTT--GCTAGGATGCTGGCGTAATGGCTG-TCAGCGACC Cladonia_rangiferina_AY300832 GAACAGGGCGTCATAGAGGGTGAGAATCCCGTATGTGACCTGTGATC-AAGCCCATGTGAAACCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACCTGTC-CGCGGACGATCAGCTCTCGTTC--------TCGGGGGTGCACTCGTTCGTGATCAGGCCAGCATCGGTTTGGGCGGCCGGATAAAGGCCTTGGGAATGTAGCTCCTTCC----GGGGAGTGTTATAGCCCTTGGTGCAATGCGGCCAGCCCGGACCGAGGACCGCGCCTTCG-GGCTAGGATGCTGGCGTAATGGTTG-TAAGCGACC Coenogonium_pineti_AY300834 GAACGGGGCGCCGCAGAGGGTGAGAGTCCCGTACGGCCAGGGTGGAC---GCCCGCACGAGGCCCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAACGGGTGGTAAATTTCATCCAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGCGTGAGCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGGCCAGACTCGCC-CGCGGGTGCTCACCCCCGTCTTC------GGGCGGGGGGCACTCACCCGCGGCCGGGCCAGCATGGGCTCCGGCGGTCGGACAAAGGCCCGGGGAACGTACCTCCCCTC----GGGGAGTTTTATAGCCCCGGGTGCAATGCGGTCAGCCGGGGCCGAGGAACGCGCATTC---GCTAGGATGCTGGCATAATGGCCG-CCAGCGGCC Conotrema_urceolatum_AY661686 GAACAGGGCGTCATAGAGGGTGAGAATCCCGTACGTGACCGGTCGCC-AACCCCATGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTCGCC-CGGGGTTGATCAGCCGTCCTTC--------TGGGCGGTGCACTCTGCCCCGGCCGGGCCAGCATCGGTTCGGGCGGTCGGACAAAGGTTCTGGGAACGTAGCTCCTCTT----GGGGAGTGTTATAGCCCGGGGCGTCATGCGGCCAGCCCGGACCGAGGACCGCGCTTTT---GCTAG-ATGCTGGCTAACTGGTTGGCCAGCCACC Cryptodiscus_foveolaris_AY661683 GAAAGCGGCGCCATAGAGGGTGAGAGTCCCGTTGGAACAGTGTCTGC---TTCCATGTGATGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTATATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTACAGCCAGACTCGCT-TG-GGGTGCTCAGC--CGTCTTT------GGC---GGTGTACTCGCCCCCTAGCGGGCCAACATCAGTTCGAGCGGCCGGATAAAGACCTTGGGAATGTGATACTCTAC----GGGGTATGTTATAGCCCGAGGTGTAATGCGGTCAGCTTGGACTGAGGACCGCGCTTCG---GCAAGGATGTTGGCGTAATGGCTG-TCAGCGACC Cryptodiscus_microstomus_FJ904676 GAACGGGGCGTCACAGAGGGTGATAATCCCGTACGTGACCGGCCATC-GATCCCGTGTGAGGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCTGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTCGCT-CGCGGGTGATCAACCGTCCCTC--------GGGGCGGTGCACTCTCTCGCGACCGGGCCAGCATCGGTTTTGGCGGCCGGACAAAGGCCCAGGGAACGTAGCTCCTCTC----GGGGAGTGTTATAGCCCTGGGTGCAATGCGGCCAGCTGGGACCGAGGACCGCGCTTTT---GCTAGGATGCTGGCGTAATGGCTG-TCAGCGACC Cryptodiscus_pini_FJ904681 GAACGCGGCTTCCTAGAGGGTGAAAGTCCCGTA-GCGAGCGGTGTCC-GCTCCCATGTGATGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTATATTTCATCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTCGCC-CG-GGGTGCTCAACCGTCCTTC--------GGGGCGGCGTATTCGCCTTCGGGCGGGCCAGCATCGGTTCGGGCGGCCGGACAAAGGCCCCGGGAATGTAAATCCCCAC----GGGGATGGTTATAGACCGGGGTGCAATGCGGCCAGCCTGGACCGAGGACCGCGCTTCG---GCAAGGATGCTGGCGTAATGGCTG-TCAGCGACC Dictyocatenulata_alba_12918 GAACGGGGCGTTACAGAGGGTGAGAATCCCGTATCTGGCTGGCCTTC-GACCCCATGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATTGGTGGTAAATTTCATCTAAAGCTAAATACCGGCTGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTCGCAGCCAGACTCGCC-CGCAGCTGATCAGCCGTCCTCC--------GGGGCGGTGTACTCTGTTGTGGCCGGGCCAGCATCGATTCCGGGAGCTGGATAAAGGCCTTGGGAAAGTAGCTCCACTT----CGG-AGTGTTATAGCCCTCTGCGTCATGCGGCTTTCTGGGATCGAGGACCGCGCGTTT---GCTTGGATGCTGGCGTAATGGCTG-TCAGCGGCC Dictyocatenulata_alba_5358 GAACGGGGCGTCACAGAGGGTGAGAATCCCGTATCTGGCTGGCCTTC-AACCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATTGGTGGTAAATTTCATCTAAAGCTAAATACCGGCTGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTCGCAGCCAGACTCGCC-CGCAGCTGATCAGCCGTCCTCC--------GGGGCGGTGTACTCTGTTGTGGCCGGGCCAGCATCGATTCCGGAAGCTGGATAAAGGCCTTGGGAAAGTAGCTCCACCT----CGG-AGTGTTATAGCCCTCTGCGTCATGCGGTTTTCTGGGATCGAGGACCGCGCGTTT---GCTTGGATGCTGGCGTAATGGCTG-TCAGCGACC Dictyocatenulata_alba_5359 GAACGGGGCGTCACAGAGGGTGAGAATCCCGTATCTGGCTGGCCTTC-GACCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCTGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTCGCAGCCAGACTCGCC-CGCAGCTGATCAGCCGTCCTCC--------GGGGCGGTGTACTCTGTTGCGGCCGGGCCAGCATCGATTCCGGGAGCCGGATAAAGGCCTTGGGAAAGTAGCTCCACCT----CGG-AGTGTTATAGCCCTCTGCGTCATGCGGCTTTCTGGGATCGAGGACCGCGCGTTT---GCTTGGATGCTGGCGTAATGGCTG-TCAGCGGCC Dictyocatenulata_alba_5360 GAACGGGGCGTCACAGAGGGTGAGAATCCCGTATCTGGCTGGCCTTC-GACCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCTGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTCGCAGCCAGACTCGCC-CGCAGCTGATCAGCCGTCCTCC--------GGGGCGGTGTACTCTGTTGCGGCCGGGCCAGCATCGATTCCGGGAGCCGGATAAAGGCCTTGGGAAAGTAGCTCCACCT----CGG-AGTGTTATAGCCCTCTGCGTCATGCGGCTTTCTGGGATCGAGGACCGCGCGTTT---GCTTGGATGCTGGCGTAATGGCTG-TCAGCGGCC Dictyocatenulata_alba_8401 GAACGGGGCGTCACAGAGGGTGAGAATCCCGTATCTGGCTGGCCTTC-GACCCCATGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATTGGTGGTAAATTTCATCTAAAGCTAAATACCGGCTGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTCGCAGCCAGACTCGCC-CGCAGCTGATCAGCCGTCCTCC--------GGGGCGGTGTACTCTGTTGTGGCCGGGCCAGCATCGATTCCGGGAGCTGGATAAAGGCCTTGGGAAAGTAGCTCCACTT----CGG-AGTGTTATAGCCCTCTGCGTCATGCGGCTTTCTGGGATCGAGGACCGCGCGTTT---GCTTGGATGCTGGCGTAATGGCTG-TCAGCGGCC Furcaspora_eucalypti_EF110613 GAACAGGGCGTCATAGAGGGTGAGAATCCCGTACGTGACCGGCCGTC-AATCCCATGTGAGACCCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTATATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCT-CCCGGGTGATCAGCCGTCCTTC--------GGGGCGGTGCACTCGCCCGGGATCAGGCCAGCATCGGTTTCGGCGGCTGGACAAAGGCCTCAGGAATGTGGCTCCCCTC----GGGGAGTGTTATAGCCTGGGGTGCAATGCAGCCAGCCGGGACCGAGGACCGCGCTTCG---GCTAGGATGCTGGCGTAATGGTTG-TAAGCGACC Glyphis_cicatricosa_AY640025 GAACAGGGCGTCACAGAGGGTGAGAGTCCCGTCCG-GATCGTCTGTC-CAGCCCGTGTGAAGCCCTTTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATCTGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGCAGCCAGACTCGCA-CGCGGGGGCTCCGCCGCTCTTC--------GGGGCGGTCCACTCCCCCGCGATCGGGCCAGCATCGGTTTCGGCGGCCGGACAAAGGCCCTGGGAACGTAGCTCTCCTC----GGAGAGTGTTATAGCCCGGGGTGCAATGCGGCCAGCCGGGACCGAGGACCGCGCTTCG---GCTTGGATGCTGGCGTAATG??TG-CCACCG?CC Graphina_peplophora_DQ431930 GAACGGGGCGTCATAGAGGGTGAGAGCCCCGTACGCGGCCGCCCGCC-AACCCCGTGTGAAGCCCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCCGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTGAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTCGCC-CGCGGGCGTTCAGCCGCCCCCC--------GGGGTGGTGTACTCGCCCGCGGTCGGGCCAGCATCGATTCTGGCGGCCGGACAAAGGTCCCGGGAACGTGGCTCTCTTC----GGGGAGCGTTATAGCCCGGGGCGCAATGCGGCCAGCCGGGGTCGAGGACCGCGCTTTTT--GCTAGGATGCTGGCGTAATGGTTG-CCAGCGACC Gyalecta_ulmi_AF465463 GAACGGGGCGTCACAGAGGGTGAGAATCCCGTACGCGACCCGACGTC-GAGCCCGTGCGAGGCCCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTATGTGAAATTGTTGAAGGGGAAGCGCTTGCAGCCAGACTCGCG-CGCGGGTGATCAGCCTCCCTCC--------GGGGTGGTGCACTCTCCCGCGCACGGGCCAGCATCGGTTTCGGCCGCCGGACGAAGGCCCGGGGAACGTAGCTCTCCCTTCGGGGGGAGTGTTATAGCCCCGGGTGTAATGCGGCGAGCCGGGACCGAGGACCGCGCTTCG---GCTAGGATGCTGGCGTAATGGCTG-CCAGCGACC Lecanora_muralis_DQ787339 GAACAGGGCGTCATAGAGGGTGAGAATCCCGTATGTGACCGGCGACC-AACCCCATGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACCTGTC-CGCGGGCGATCAACCTCTGTTC--------TCAGGGGTGCACTCGTCCGCGATCAGGCCAGCATCGGTTCGGGCGGCCGGATAAAGGCCTTGGGAATGTAGCTCCTCTC----GGGGAGTGTTATAGCCCGCGGTGCAATGCGGCCAGCCCGGACCGAGGACCGCGCTTC---GGCTAGGATGCTGGCGTAATGGTTG-TAAGCGACC Melanops_tulasnei_FJ824765 GAACAGGACGTCGTAGAGGGTGAGAATCCCGTATGCGATGGGTTGCCCGAGCC-ATGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTCGTC-CGCAGTTGCTCAGCCGGTCTCC--------TGACCGGTGTACTCTTCTGCGGCCGGGCCAGCATCAGTTCGGGCGGTCGGATAAAGGTCCCGGGAATGTAGCTCCTCTC----GGGGAGTGTTATAGCCCTGGGCGGAATGCGGCCAGCCCGGACTGAGGATCTCGCTTCG---GCTAGGATGCTGGCGTAATGGCTG-TAAGCGGCC Ostropa_barbara_HM244773 GAACAGGGCGTCATAGAGGGTGAGAATCCCGTACGTGACCGGTCGCC-AACCCCATGTGAAACTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTCGCC-CTGCGGTGATCAATCGTCCTTC--------TGGGCGGTGCACTCTCCGTATGGCGGGCCAGCATCGGTTCGAGCGGCCGGATAAAGGCCCCGGGAACGTAGCTCCTCTC----GGGGAGTGTTATAGCCCGGGGTGCCATGCGGCCAGTTTGGACCGAGGACCGCGCTTTT---GCTAGGATGCTGGCGTAATGGTTG-CCAGCGACC Phaeographis_caesioradians_AY640021 GAACAGGGCGTCATAGAGGGTGAGAATCCCGTATGTGGCCGATTGTC-TATCCCGTGTGAAGCCCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCTGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTCGTT-CGCGGGGGCTCAACCGTTCTTC--------GGGACGGTGTACTCCCTCGTGGCCGGGCCAGCATCGGTTTCGACGGTCGGACAAAGGCCCTGGGAATGTAGCTCCCTCC----GGGGAGTGTTATAGCCCGGGGTGCAATGCGGCCTGCCGGGACCGAGGACCGCGCTTTT---GCTAGGATGCTGGCGTAATGGTTG-CCAGCGACC Phyllobaeis_erythrella_DQ986780 GAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACTGGTGGTC-AAGCCCATGTGAGTTTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGGTCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGGAGCGCTTGCAACCAGACTTGCT-TACGGGTGATCCGCTGTCCTTC--------GGGGCAGTCTATTCTCCCGTGATCAGGCCAACATCGGTTTTGGCGGCTGGATACAGGCCTCAGGAACGTGGCTCTCTCC----GGGGAGTGTTATAGCCTGGGGTGTCATGCAGCCAGCTGGGACCGAGGACCGCGC-TTC--GGCTAGGATGTTGGCGTAATGGTTG-TCAGCGACC Sarcoleotia_globosa_AY789409 GAACAGGACGTCACAGAGGGTGAGAATCCCGTATGTGGCTGGAGGTCTATGCCCATGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCGGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTTGCC-CGCAGTTGATCAACCGGTGTTC--------TCACCGGTGCACTCTGCTGTGGTCAGGCCAGCATCGGTTTGGGTGGCTGGAGAAAGGCCCCGGGAATGTGGCTCTCTTC----GGGGAGTGTTATAGCCCGGGGCGTCATGCAGCCAGCCTGGACCGAGGACCGCGCTTCG---GCTAGGATGCTGGCGTAATGGTTG-TAAGCGACC Sphinctrina_turbinata_EF413632 GAACAGGACGTCATGGAGGGTGAGAATCCCGTGTGTGACCGGGGACC-ACGCCCATGTGAAACACCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCATGTGAAATTGTTGAAAGGGAAGCGGAAGCAACCAGACTCGCT-GCCGGGTGCTCAACCGGGGTTC--------TCCCCGGGGCACTCACCCGGTCTCGGGCCAGCATCGGTTCGGACGGCCAGACAAAGGCTCCGGGAATGTAGCTCCCTCTC--GGGGGAGTGTTATAGCCCGGGGTGGCATGTGGCCAGCCCGGACCGAGGAACGCGCGTTT--TGCACGGATGCTGGCGTAATGGTTG-TTCCCGGCC Stictis_radiata_AY340575 GAACAGGGCGTCATAGAGGGTGAGAATCCCGTACGTGACCGGTCGCC-AACCCCATGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTCGCC-CGGGGGTGATCAGCCGTCCTTT--------TGGGCGGTGCACTTTCCCCCGGTCGGGCCAGCATCGGTTCGGGCGGTCGGACAAAGGCTTCGGGAACGTAGCTCCTCTC----GGGGAGTGTTATAGCCCGGGGTGTAATGCGGCCAGCCCGGACCGAGGACCGCGCTTTTT--GCTAGGATGCTGGCGTAATGGTTG-CTAGCGACC Trapelia_placodioides_AF274103 GAACAGGACGTCACAGAGGGTGAGAATCCCGTACGTGACCGGCGGTC-AACCCCATGTGAGGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCT-CGCGGGTGATCAACCGTCCTTC--------GGGGCGGTGCACTGACCCGCGATCAGGCCAGCATCGGTTTCGGCGGCCCGACAAAAGGGGCGGGAACGTAGCTCCCCCC----GGGGAGTGTTATAGCCCGTCCCACAATGGGGTCAGCCGGGACCGAGGACCGCGCTTCG---GCTAGGATGCTGGCGTAATGGCTG-TAAGCGACC Trapeliopsis_flexuosa_AF274118 GAACAGGACGTCACAGAGGGTGAGAATCCCGTACGTGACCGGCCGTC-AACCCCATGTGAGGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCC-CGCGGGTGATCAGCCGTCCTTC--------GGGGCGGTGCACTCTCCCGCGATCAGGCCAGCATCGGTTT{CG}GGCGGCCAGATAAAGACTTCGGGAACGTGGCTCCCTCC----GGGGAGTGTTATAGCCCGTCGTGCCATGTGGTCAGCCGGGACCGAGGACCGCGCTT-G---GCTAGGATGCTGGCGTAATGGTTG-TCAGCGACC Umbilicaria_calvescens_HM161523 GAACAGGACGTCATAGAGGGTGAGAATCCCGTACGTGGCCGGCGGCC-CAGCCCGCGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCCCCCAGACTTGCC-CGCGGGTGATCAGCCGTCCTTC--------TGGGCGGTGCACTCGCCCGCGGTCAGGCCAGCATCGGTCCGGGCGGCCGGATAAAGGCCCCGGGAATGTGGCTCCCCCCC--GGGG?AGTGTTATAGCCCGGGGTGCAATGCGGCCAGCCCGGACCGAGGACCGCGCTTCG-----GCGGATGCTGGCGTAATGGGTG-CAAGCGACC Umbilicaria_nylanderiana_HM161543 GAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACCGGTGACT-CAGCCCGCGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCC-TGTGGGCGATCAGCCGTCCTTC--------TGGGCGGTGCACTCGCCTGCGGTCAGGCCAGCATCGGTTCGGGCGGCCGGATAAAGGCCCTGGGAATGTAGCTCCCCCC----GGGGAGTGTTATAGCCCGGGGTGCAATGCGGCCCGCCGGGACCGAGGACCGCGCTTCG-----GCGGATGCTGGCGTAATGGTTG-TAAGCGACC ; END; [ The following blocks are output data for analysis step 8620 ] BEGIN TREES; TITLE lsu_phylogeny; LINK TAXA = TaxaForAnalysisStep8620; TREE lsu = [&R] (((((Dictyocatenulata_alba_5358,Dictyocatenulata_alba_5359),(Dictyocatenulata_alba_5360,Dictyocatenulata_alba_8401)),((Dictyocatenulata_alba_12918,Acarospora_smaragdula_AY853354),(Acarosporina_microspora_AY584643,(Agyrium_rufum_EF581826,Botryosphaeria_melanops_DQ377856)))),(((Calicium_viride_AY453638,Caloplaca_regalis_EU161240),(Carestiella_socia_AY661682,Cladonia_rangiferina_AY300832)),((Coenogonium_pineti_AY300834,Conotrema_urceolatum_AY661686),(Cryptodiscus_foveolaris_AY661683,(Cryptodiscus_microstomus_FJ904676,Cryptodiscus_pini_FJ904681))))),((((Furcaspora_eucalypti_EF110613,Glyphis_cicatricosa_AY640025),(Graphina_peplophora_DQ431930,Gyalecta_ulmi_AF465463)),((Lecanora_muralis_DQ787339,Melanops_tulasnei_FJ824765),(Ostropa_barbara_HM244773,(Phaeographis_caesioradians_AY640021,Phyllobaeis_erythrella_DQ986780)))),(((Sarcoleotia_globosa_AY789409,Sphinctrina_turbinata_EF413632),(Stictis_radiata_AY340575,Trapelia_placodioides_AF274103)),((Trapeliopsis_flexuosa_AF274118,Umbilicaria_calvescens_HM161523),(Umbilicaria_nylanderiana_HM161543,(Belonia_herculana_FJ941886,Belonia_russula_FJ941887)))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr50976] END;