#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 14, 2025; 14:29 GMT TreeBASE (cc) 1994-2008 Study reference: Cohen B.L., Stark S., Gawthrop A., Burke M., & Thayer C. 1998. Comparison of articulate brachiopod nuclear and mitochondrial gene trees leads to a clade-based redefinition of protostomes (Protostomozoa) and deuterostomes (Deuterostomozoa). Proceedings of the Royal Society B, 265(1395): 475-482. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S601] [ The following blocks are input data for analysis step 880 ] BEGIN TAXA; TITLE TaxaForAnalysisStep880; DIMENSIONS NTAX=27; TAXLABELS Abyssothyris_sp. Acanthopleura_japonica Allotheura_sp. Cancellothyris_hedleyi Dyscolia_sp. Gryphus_vitreus_521 Gryphus_vitreus_525 Latimeria_chalumnae Liocheles_waigiensis Liothyrella_neozelanica_289_Sues Liothyrella_neozelanica_290 Liothyrella_uva_1024 Liothyrella_uva_1072 Liothyrella_uva_930 Lumbricus_terrestris Magicicada_tredecim Notosaria_nigricans Protopterus_annectens Scolecomorphus_crosnieri Sipunculus_nudus Stenosarina_crosnieri Terebratulina_retusa_677 Terebratulina_retusa_678 Terebratulina_septentrionalis_163 Terebratulina_septentrionalis_164 Tetragnatha_mandibulata Xenopus_laevis ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2248] TITLE 12S; LINK TAXA = TaxaForAnalysisStep880; DIMENSIONS NCHAR=426; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Abyssothyris_sp. CCCCACTATTCT-AGAT-AC--AACCCCCCCNGTACTTCTAGGGAACT--ACGAA-AAACCTTTAAAACCCAAAGAACTTGGCGGCATTTCACACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCCCACAACTAACCCT-ACTTGCGCTTGTT---TCCC-----AGCTTGTATACCGCC-GTCGACAGCCCACCTAC-TAAA-G-A-AAT-A-GTATGCCCCAAGGA--AAAATCCCC-ATA------CGTCAGGTCAAGGTGCAGCCAATGCG-CAAGAAGAGA-TGGGCTAC-AATAACCACC---AAAATC-AAACCTCCCA-------ATGAAAAAAGAG---CA----AAGAAGGACTTGAAA-GTAACAACAA---CCCAAAGTA-TCCCTGTGAATG-AGGCAATAAAATGTGC Acanthopleura_japonica NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGGCGGTGTTTTACATCCATTTAGGGGAAC-TGTTTAATAA-TCGATAATCCGCG-TT---CTT-ACTTTATTTATCATAGAAAAAATGTAGTTTGTGTATTGCC-GTCATCAGCTTATCCTTTAGGGTG-A-AAT-A-ATAAGC---AG-AT--AAC-TAAT-TAGAGTTTTATGTCAGGTCAAAGTGCAGCTTATAAT-AAAGATAGAA-TGGGTTAC-ATTTTTAAAG--AGAATT--CAGAAATTTA-------TTGAAATTTAAA---TGG---AAGGTGGACTTAATA-GTAATTTTATA--TTT-AGAATAATATAGTGAACA-CGGCTCTAAAAGNNNN Allotheura_sp. NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGCGGTATATTA-AACATTATAGAGGAATTTGTACCTTAA-TCGATATTCCCCG-TTAAT-TT-ACCCTGGTTGGT----AAGTC----AACTTGTATATCGCT-GTCGTAAG-ATTATTTT-TAGA-G-A-AATTTTTCA-------ATAA-TAAA-TTTTTATTTA-----TGTCAAGTCAAGGTGCAGTAAATGCC-TAGGGTTGAGATGGGTTAC-AATGTATG----AATACAT-ATGAATATGATT-----TTGTAAAATGTTAT-TG----AAGGTGGATTTAATT-GTAATGTAGCA--TTT--GTTCATGAAACTGAAAG-AGGTCCTAAAATNNNN Cancellothyris_hedleyi CCCCACTATTCT-AGCC-TTAAAACTCAAA---CGCTTCTAGGGCACT--ACGAA-AAACCTTTAAAACCCAAAGAACTTGGCGGCCCTTTATACCCAATCAGGGGAGCCTGTCCTAGAA-TTGATACCCCACACCTCCCACA-ACTTGCCCTCGCC----CTCCC---AGCCTGTATACCGCCTGTCGCCAGCC-ACCTA---AAA-A-A-AGCAA-GTATGCCC-AATAG-TAA--CCAC-TAGAA-----CGTCAGGTCAAGGTGCAGCCTATGAG-CAAGAAGAGAATGGGCTAC-AGTCTCTAAC---AAACTC-AGAAGTCTAA-------ATGAAAAAAAGA---CTA---AAGAAGGACTTGAAA-GTAATGGG-----AGCAAGGAG-CCCCCATGAATA-GAGCAATAAAGTGTGC Dyscolia_sp. CCCCACTATTCT-TGGC-GC--AACCTCAA---TACTTCTAGGGTACT--ACTAA-AGACCTTTAAAACCCAAAGAACTTGGCGGCATTTCACACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCCCACAACTAACCCC-ACTTGCCCTCGCC----TTC-----AGTCTGTATACCGCC-GTCGACAGCCCACCTAC-AAAA-G-A-AAT-A-GTATGCTCCAAGGG-TAAA-CCCCC-GCA------CGTCAGGTCAAGGTGCAGCCAATGAG-CAAGAAGAGA-TGGGCTAC-AGTAATAAAC---AAAACC-TAACCTCTCA-------ATGAAAAAAGAG---CAA---AAGAAGGACTTGAAA-GTAACGGAGG---CCT-AAGCA-CCTAAGTGAATTCCGGCAATAAAATGTGC Gryphus_vitreus_521 CCCCACTATTCT-AGCC-CTAAAACTTAAC---CACTTCTAGGGCACTCTACGAA-AAACCTTTAAAACCCAAAGAACTTGGCGGCATTTCACACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCCCACAACTAACCCC-ACTTGCGCTTGCC---CCCC-----AGCTTGTATACCGCC-GTCGACAGCCCACCTAC-TAAA-G-A-AAC-A-GTATGCTCCAAGGA--AAAATCCC-TATA------CGTCAGGTCAAGGTGCAGCCAATGCG-CAAGAAGAGA-TGGGCTAC-AATAACCAAC---AAACTC-GAACCTCCCA-------ATGAAAAAAGAG---CA----AAGAAGGACTTGAAA-GTAACAACAACAACCCAAAGTA-CTCCTGTGAATG-GGGCAATAAAATGTGC Gryphus_vitreus_525 CCCCACTATTCT-AGGT-GC--AACCCCCTA--TACTTCTAGGGAACT--ACGAA-AAACCTTTAAAACCCAAAGAACTTGGCGGCATTTCACACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCCCACAACTAACCCC-ACTTGCGCTTGCC---CCCC-----AGCTTGTATACCGCC-GTCGACAGCCCACCTAC-TAAA-G-A-AAC-A-GTATGCTCCAAGGA--AAA-CCCCCTATA------CGTCAGGTCAAGGTGCAGCCAATGCG-CAAGAAGAGA-TGGGCTAC-AATAACCAAC---AAACTC-GAACCTCCCA-------ATGAAAAAAGAG---CA----AAGAAGGACTTGAAA-GTAACAACAA---CCCAAAGTA-CTCCTGTGAATG-GGGCAATAAAATGTGC Latimeria_chalumnae NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGGCGGTGCTTCATACCC-CCTAGAGGAGCCTGTTCTAGAA-CCGATAAACCCCGATCAACCTCAACCACACT-TGCT---ATTTC----AGCCTATATACCGCC-GTCGCCAGCCCACCCTGTGAAG-G-AAATACA-ATGGGCAAAAATAA--AAA-AATT-AAAAA-----CGTCAGGTCGAGGTGTAGCAAATGAGATGGGAAGAAA-TGGGCTAC-ATTTTCTACAT-AGAATATTACGAAAAAAACA-----GCGAAACCTGTACTTTG----AAGGAGGATTTAGCA-GTAAAAGGGGA---ATAGAGAGCCCCTCTNNNNNN-NNNNNNNNNNNNNNNN Liocheles_waigiensis NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGCGGCGTTTTA-AAT-AATTGGAGGAACCTGTTTCTTAA-TTGATAATCCACATCATATCTT-ACCTT-----------ATTTT----TGTTTGTATATCGTT-GTTTTAAGATAATGTAT--ATT-A-A----CT-ATAATCAA-AATTAAAAGT-TTTT-AAAAA------ATCAAATCAAGGTGCAGCTTA-ATA--TGGATGAAA-TGGGTTAC-AATATAAATT--ATATATT-ACGGATTTAA-------TTGAAAATTAATT--TG----AAGGTGGATTCAAAA-GTAATTTAAAA---TT-AAGAAGTTTATTTGAATA-ATAATTTAATGNNNNN Liothyrella_neozelanica_289_Sues NNNNNNNNNNNNNNNNN-NNNNNNNNNNAA---TANNNCTAGG--ACT--ACGAN-AGACCT--AA--CC--AAGAACTTGGCGGCATT-CACACCCAAT-AGGGGAGCCTGTCCTAGAA-CTGATACCC-ACAACTAACCCT-ACTTGCCCTCGCC---CCC------AGCCTGTATACCGCC-GTCGACAGCCCACCTAC-AAAA-G-A-AAT-A-GTATGCTCCAAGGG--AAA-CCCCCCTCA------CGTCAGGTCAAGGTGCAGCCAATGAG-CAAGAAGAGA-TGGGCTAC-AATAACAAAC---AAATCC-CAACCTCCGA-------ATGAAAAAAGAA---------------GACTTGAAA-GTAATAGGG-----CC-AAGTG-CCC-TATGA-T--CGC--ATNNNNNNNNN Liothyrella_neozelanica_290 NNNNNNNNNNNNNNNNN-NNGCAACTCCAA---TANNNCTAGG--ACT--ACGAN-AGACCTTTAAA-CCCAAAGAACTTGGCGGCATT-CACACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCC-ACAACTAACCCT-ACTTGCCCTCGCC---CCC------AGCCTGTATACCGCC-GTCGACAGCCCACCTAC-AAAA-G-A-AAT-A-GTATGCTCCAAGGG--AAA-CCCCCCTCA------CGTCAGGTCAAGGTGCAGCCAATGAG-CAAGAAGAGA-TGGGCTAC-AATAACAAAC---AAATCC-CAACCTCCGA-------ATGAAAAAAGAG---CA----AAGAAGGACTTGAAA-GTAATAGGG-----CC-AAGTG-CCC-TATGAA-C-CGGC-ATAANNNNNNN Liothyrella_uva_1024 NNNNACTATTCTTGATC-GT--AACTTCAA---TACTTCTAGGGGACT--ACGAA-AGACCTTTAAAACCCAAAGAACTTGGCGGCATTTCACACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCCCACAACTAACCTC-ACTTGCCCTCGCT----CTC-----AGCCTGTATACCGCC-GTCGACAGCCCACCTAC-AAAA-G-A-AAT-A-GTATGCCCCAAGGG-TAAAACCCC--GCA------CGTCAGGTCAAGGTGCAGCCAATGAG-CAAGAAGAGA-TGGGCTAC-AGTAACAAAC---AAAACC-AACCCTCCCAA------TTGAAG---------CGAAAAGAAAAGGACTTGAAA-GTAACAGGGG---CCC-AAGTA-CCCCTGTGAATC-CGGCAATAAAATGTGC Liothyrella_uva_1072 CCCCACTATTCT-GGCC-CTAAAACTTAAA---CACTTCT-GGG-ACT--ACGAA-AGACCTTTAAA-CCCAAAGAACTTGGCGGCATTTCATACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCCCACAACTAACCTC-ACTTGCCCTCGCT----CTC-----AGCCTGTATACCGCC-GTCGATAGCCCACCTAC-AAAA-G-A-AAT-A-GTATGCCCCAAGGG-TAAAACCCC--GCA------CGTCAGGTCAAGGTGCAGCCAATGAG-CAAGAAGAGA-TGGGCTACCAGTAACATGG---NAAACC-AAACCTGCCAA------GTGAAAAAAGAG---CGA---AAGAAGGACTTGTAAAGTAACAGGGG---CCC-AAGTA-CCCCTGTGAATC-CGGCAATAAAATGTGC Liothyrella_uva_930 NNNNACTATTCT-TGAC-GC--AACTTCAA---TACTTCTAGGG-ACT--ACGAA-AGACCTTTAAAACCCAAAGAACTTGGCGGCATTTCACACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCCCACAACTAACCTC-ACTTGCCCTCGCT----CTC-----AGCCTGTATACCGCC-GTCGACAGCCCACCTAC-AAAA-G-A-AAT-A-GTATGCCC-AAGGG-TAAAACCCC--GCA------CGTCAGGTCAAGGTGCAGCCAATGAG-CAAGAAGAGA-TGGGCTAC-AGTAACAAAC---AAAACC-AACCCTCCCA-------ATGAAAAAAGAA---CGA---AAGAAGGACTTGAAA-GTAACAGGGG---CCC-AAGTA-CCCCTGTGAATC-CGGCAATAAAATGTGC Lumbricus_terrestris NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGCGGTGTCTTA--TCAACCCAGGGGAACCTGTCTCATAACTCGATAACCCACGAATT-CCTC-ACCCTCTCTAGAT---TCTAC----AGCCTGTGTACTGCC-GTCGTAAGCACACCCCT-AAAA-G-A-AAGAA-GTGTGCAGACATG-ATTAAA-CTC-ATATA-----CGTCAGGTCAAAGTGCAGCCCATGGG-AGGGAGATGA-TGGGTTAC-ACCCTAAAC---AAAGAT--ACGGAATAT--------AGTACTAAAAGCTA-TAT---AAATTATTACTTGGTTGTAACGTTTC---TTC-AAAAC--TAAAGTGAATA-TGAATCTAAGNNNNNN Magicicada_tredecim NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGCGGTAATTTA--TCTAATCAGAGGAATCTGTTTTGTAA-TTGATAATCCACGATAGATTCT-ATTTT-----------AAATA----AATTTGTATACCTCT-GTC--AAGAATGTTTCNCA{AGT}ATA-TCAG-A-ATAATTT-TCAT-----TTGTT-TTAT-TAAT--AAAA-----TGTCAGGTCAAGGTGCAGTTAATTTT-AAAGAAAGAA-TGGATTATTGT----AAAAA---ATGAATTGTTTTCTATAATGAAAA-TCA----TG----AAACTGGATTTGAAA-GTAAATTTCA----TTAAATATGTGTTTTTGAATT-TAGGTCTAAATTATGT Notosaria_nigricans CCCCACTATGGT-AGAGACTAAA-CACAGAGA-TACTGGTAGAGTACT--ACGAATAACCCCTTGAAACCCAAAGAACTTGGCGGCGTTCCAAACCCAATCAGGGGAACCTGTCCTAGAATCTGATAATCCACAACCACCACT-ACTTTTTCTTGCC--GACCCC----AGCTTGTATACCGCC-GTCTTCAGCCCACCTAA-AAAA-GCACAAC-ACGTGTGCCCCAA-AT--CAC-TCAT-CATAA------GTCAGGTCAAGGTGCAGCCAATGAA-AAAGAAGAGA-TGGGTTAC-AGTTTAAAAC---AAAATC-CGAAGTAAAA-------CTGAAATT-AAA---TGA---AAGAAGGACTTGAAA-GTAATGGTGG----CCGAGGAA-CCCCCATGAATA-AGGCACTGGAACGTGT Protopterus_annectens NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGGCGGTGCCTCACACCCACCTAGAGGAGCCTGTTCTAGAA-CCGATAATCCACGTTTTACCCA-ACCTTCCCTGGCC---ATTTC----AGCCTATATACCGCC-GTCGCCAGCCAACCCCCTGAGG-C--CCACTA-GTTGGCAA-AATAG--ATAGCATC-TAACA-----CGTCAGGTCGAGGTGTAGCACATGGG-AGGGAAGAAA-TGGGCTAC-ATTTTCTAAT--AGAAAAC-ACGGACAACCCC-----ATGAAATTGGGGTT-TT----AAGCTGGATTTAGTA-GTAAGAAAANN---NNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN Scolecomorphus_crosnieri NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGGCGGTG-CCCCACCCAACC-AGAGGAGCCTGTTCTATAA-TCGATAATCCACGCTAAACCTC-ACCACTTTTTGTT---ATTAC----AGTTTATATACCACC-GTCATCAATTAACCTTGTGAAA-G-AAACTTA-GTTGATAA-AATTA--ATAATACT-AAATA-----CGTCAGGTCAAGGTGTAGCATATAAAGTGGAAAGAAA-TGGGCTAC-ATTTTCTTAAAAAGAAAAT-ACGAATTAATGTT----ATGAAAACACATT--TG----AAGGCGGATTTGGAA-GTAAAAAGAA----ACAAGAATATTCTTTTTAATT-AGGATATGAGG{CG}GCGC Sipunculus_nudus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGGCGGTGCTTCA--CCAAACTAGGGGAGCCTGTCGCTTAGTTCGATAATCCGCGATAAACCCA-ACCTAATCTTGA----CCCCC----AGCCTGTGTATTGCC-GTCGCAGGCCTACCTCC--AAA-G-A-GA----GTAGACACACAAG-CCACATTCATCGCTACC---ACGTCAGGT-AAAATGCAGCCAGTGAT-TAGGGGCTGA-TAGGCTAC-AATTCCCG----ATTGTC--ACTGGAACCAG------CGGGGAACCCCG---TCGCG-AAAATGGACTTAGAA-GTAATTTTCA---CTC-ATCACGTGAAAATGAA-ACCTGCCATCTGAAGCGT Stenosarina_crosnieri CCCCACTATTCT-AGAC-AC--AACCCCCG---TACTTCTAGGG-ACT--ACGTAAAAAACTTTAAAACCCAAAGAACTTGGCGGCATTTCACACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCCCACAACTAACCCT-ACTTGCGCTTGTT---CCCC-----AGCTTGTATACCGCC-GTCGACAGCCCACCTAC-TAAA-G-A-AAC-A-GTATGCCCCAAGGA--AAAATCCC-TATA-------GTCAGGTCAAGGTGCAGCCAATGCG-CAAGAAGAGA-TGGGCTAC-AATAACCAAC---AAAATC-AAACCTCCCA-------ATGAAAAAAGAG---CA----AAGAAGGACTTGAAA-GTAACANCAA---CCCAAAGTA-TCCCTGT-AATA-GGGCAATAAAATGTGC Terebratulina_retusa_677 CCCCACTATTCT-AGCC-CTAAAACTTAAA---CACTTCTAGGGCACT--ACGAA-AGACCTTTAAAACCCAAAGAACTTGGCGGCCCTTTATACCCCATCAGGGGAGCCTGTCCTAGAA-CTGATATTCCACAACTAACCCC-ACTTGTCCTCGCC---CCTC-----AGCCTGTATACCGCC-GTCGCCAGCCCACCTAA-AAAA-----GCC-A-GTATGCCC-AATAG--AAA-CCTC-TAGAA-----CGTCAGGTCAAGGTGCAGTCCATGGA-CAAGAAGAGA-TGGGCTAC-AGTATCCACC---AAGCTC-GGAA-TCCCGA------A-GAAAAAA------GAA---AAGAAGGACTTGAA--GTAATGGGA------CAAAGAA-CCCCCATGAATA-GAGCAATAAAGCGTGC Terebratulina_retusa_678 CCCCACTATTCT-AGCC-CTAAAACTTAAA---CACTTCTAGGGCACT--ACGAA-AAACCTTTAAAACCCAAAGAACTTGGCGGCCCTTTATACCCCATCAGGG-AGCCTGTCCTAGAA-CTGATATTCCACAACTAACCCC-ACTTGTCCTCGCC---CCTC-----AGCCTGTATACCGCC-GTCGCCAGCCCACCTA---AAA-A-A-GCC-A-GTATGCCC-AATAG--AAA-CCTC-TAGAA-----CGTCAGGTCAAGGTGCAGTCCATGGA-CAAGAAGAGA-TGGGCTAC-AGTATCCACC---AAGCTC-GGAATCCCGA-------ATGAAAAAAAGA---AA----AAGAAGGACTTGAAA-GTAATGGG------ACAAAGAA-CCCCCATGAATA-GAGCAATAAAGCGTGC Terebratulina_septentrionalis_163 CCCCACTATTCT-AGCC-CTAAAAGTTAAA---CGCTTCTAGGGCACT--ACGAA-AAACCTTTAAAACCCAAAGAACTTGGCGGCCCTTTATACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACTCCACAACTAACCCC-ACTTATCCTCGCC---TATC-----AGCCTGTATACCGCC-GTCGCCAGCCCACCTAA--AAA-----GCC-A-GTATGCTC-AATAG--AAA-CCTC-TAGAA-----CGTCAGGTCAAGGTGCAGCCTATGGA-TAAGAAGAGA-TGGGCTAC-GT-ATTCACC---AAGCCC-AGAAATCTA--------ATGAAAAAAGA----CA----AAGAAGGACTTGAAA-GTAATGGGG------TAAAGAA-CCCCCATGAATA-GAGCAATAAAGCGTGC Terebratulina_septentrionalis_164 CCCCACTATTCT-AGCC-CTAAAACTTAAA---CGCTTCTAGGGCACT--ACGAA-AAACCTTTAAA-CCCAAAGAAGTTGGCGGCCCTTTATACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACTCCACAACTAACCCC-ACTTATCCTCGCC---TATC-----AGCCTGTATACCGCC-GTCGCCAGCCCACCTAA-AAAA-----GCC-A-GTATGCTC-AATAG--AAA-CCTC-TAGAA-----CGTCAGGTCAAGGTGCAGCCTATGGA-TAAGAAGAGA-TGGGCTAC-AG----CACC---AAGCCC-AGAAATCTAA-------ATGAAAAAAGA----CA----AAGAAGGACTTGAAA-GTAATGGGG------TAAAGAA-CCCCCATGAATA-GAGCAATAAAGCGT-C Tetragnatha_mandibulata NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGGTGGCATTTTA--TTTTATTAGAGGAACATGTTTATTAA-TCGACATTACACGATTATTTTT-ACTTTTT---------TATAA----ATTTTATATACCTCC-GTC--CAGAATAAATTT-TTAATA------TT-TTATTCAA-AATAA-TATT---AT-AATAA------TTTAGGTAAAGGTGTAGACTTTAAA-TTAGTTTAAA-TGTGTTAC-ATTAAAAA----TTATTT--AAGAATTNNNTTTT---ATAACAATATA----TG----AAAGAGGATTTATAA-GCTACTTTTTAA--TT-AAAATTTTAACTTGAATT-AAA-AATAAATGCGNN Xenopus_laevis NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGGCGGTGCTCCAAACCCACCTAGAGGAGCCTGTTCTGTAA-TCGATACCCCTCGCTAAACCTC-ACCACTTCTTGCC---AAACC----CGCCTATATACCACC-GTCGCCAGCCCACCTCGTGAGA-G-ATTCTTA-GTAGGCTT-AATGA-TTTT-TCAT-CAACA-----CGTCAGGTCAAGGTGTAGCATATGAAGTGGGAAGAAA-TGGGCTAC-ATTTTCTACCTTAGAATAA-ACGAAAGATCTCT----ATGAAACCAGAT---CGAGAAAAGGCGGATTTAGCA-GTAAAGAGAAA---CAAGAGAGTTCCTCTTTAAAA-CGGCCCTGGAGCGCGC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 12S) = N: 1-426; CODONPOSSET CodonPositions (CHARACTERS = 12S) = N: 1-426; END; [ The following blocks are output data for analysis step 880 ] BEGIN TREES; TITLE Tb5657; LINK TAXA = TaxaForAnalysisStep880; TREE Fig._2 = [&R] ((((((((Abyssothyris_sp.,Stenosarina_crosnieri),Gryphus_vitreus_521),Gryphus_vitreus_525),(Dyscolia_sp.,(Liothyrella_uva_930,Liothyrella_uva_1024,Liothyrella_uva_1072)Liothyrella_uva,(Liothyrella_neozelanica_289_Sues,Liothyrella_neozelanica_290)Liothyrella_neozelanica)),(Cancellothyris_hedleyi,((Terebratulina_retusa_677,Terebratulina_retusa_678)Terebratulina_retusa,(Terebratulina_septentrionalis_163,Terebratulina_septentrionalis_164)Terebratulina_septentrionalis)Terebratulina)Cancellothyrididae)Terebratulida,Notosaria_nigricans)Brachiopoda,(Acanthopleura_japonica,(Magicicada_tredecim,Allotheura_sp.,Tetragnatha_mandibulata,Liocheles_waigiensis)Arthropoda),(Lumbricus_terrestris,Sipunculus_nudus))Protostomozoa,(((Scolecomorphus_crosnieri,Xenopus_laevis),Latimeria_chalumnae),Protopterus_annectens)Deuterostomia); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3558] END;