#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on November 14, 2025; 11:21 GMT TreeBASE (cc) 1994-2008 Study reference: Jackman T., Larson A., De queiroz K., & Losos J. 1999. Phylogenetic relationships and tempo of early diversification in Anolis lizards. Systematic Biology, 48(2): 254-285. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S603] [ The following blocks are input data for analysis step 887 ] BEGIN TAXA; TITLE TaxaForAnalysisStep887; DIMENSIONS NTAX=55; TAXLABELS Anolis_acutus Anolis_aeneus Anolis_agassizi Anolis_ahli Anolis_aliniger Anolis_alutaceus Anolis_angusticeps Anolis_bahorucoensis Anolis_barahonae Anolis_bartschi Anolis_bimaculatus Anolis_brevirostris Anolis_carolinensis Anolis_christophei Anolis_coelestinus Anolis_cristatellus Anolis_cuvieri Anolis_distichus Anolis_equestris Anolis_etheridgei Anolis_garmani Anolis_grahami Anolis_humilis Anolis_insolitus Anolis_krugi Anolis_limifrons Anolis_lineatopus Anolis_lineatus Anolis_loysiana Anolis_luciae Anolis_lucius Anolis_luteogularis Anolis_marcanoi Anolis_maynardi Anolis_microtus Anolis_occultus Anolis_olssoni Anolis_ophiolepis Anolis_paternus Anolis_pumilis Anolis_richardi Anolis_sagrei Anolis_sheplani Anolis_strahmi Anolis_stratulus Anolis_valencienni Anolis_vanidicus Anolis_vermiculatus Anolis_wattsi Chamaeleolis_chamaeleonides Chamaeleolis_guamuhaya Chamaelinorops_barbouri Diplolaemus_darwinii Phenacosaurus_nicefori Polychrus_acutirostris ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3982] TITLE Appendix_1; LINK TAXA = TaxaForAnalysisStep887; DIMENSIONS NCHAR=16; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4 5 6 7 8 9" MISSING=? GAP= -; CHARSTATELABELS 1 'Postfrontal bone (this study)' / present. absent., 2 Parietal_foramen / at_fronto_parietal_suture. entirely_within_parietal., 3 'Parietal roof and crests, ordered linear. (These states refer to ontogenetic end' / 'crests U-shaped (not meeting posteriorly), roof trapezoidal.' 'crests V-shaped (meeting posteriorly at occipital crest but not' 'crests Y-shaped (meeting posteriorly and forming midsagittal cr', 4 'Parietal posterior margin, unordered. (Related to character 3 but treated separa' / notched_posteriorly_and_not_extending_over_occipital_region_as 'not notched posteriorly with a half-funnel-shaped portion exten', 5 'Dentary sculpturing, unordered' / absent. 'present as irregular horizontal excavations (cristatellus type)' 'present as a single, forward-directed, semilunar excavation (cy' 'present as a series of 7-10 semilunar excavations (krugi type)' 'present as irregular rugosities on posterolateral surface (Cham', 6 'Splenial bone, ordered by step matrix A1' / 'large and broad, includes anterior mylohyoid foramen and anteri' 'small and narrow, extends from posterior border of single myloh' 'very small and narrow, restricted to lingual surface of mandibl' 'very small and narrow, restricted to ventral surface of mandibl' 'absent (e.g. A. sagrei).', 7 Angular_bone / present. absent., 8 Palatine_teeth / present. absent., 9 'Modal number of presacral vertebrae, ordered linear' / 27. 26. 25. 24. 23. 22., 10 'Modal number of lumbar vertebrae, ordered linear' / 0. l. 2. 3. 4. 5. 6., 11 'Modal number of caudal vertebrae anterior to first autotomic vertebra, ordered l' / 11. 10. 9. 8. 7. 6. 5., 12 Caudal_autotomy_septa / present. absent., 13 'Postxiphisternal inscriptional rib formula, modal condition is given (attached c' / 4_to_3. 5_to_1. 4_to_2. 5_to_0. 4_to_1. 3_to_2. 4_to_0. 3_to_1. 2_to_2. 1_to_3., 14 'Caudal ribs, transverse processes, unordered' / present_on_caudal_vertebrae_extending_into_posterior_half_of_se disappear_after_a_short_series_confined_to_caudal_vertebrae_on present_on_caudal_vertebrae_extending_into_posterior_half_of_se extend_into_posterior_half_of_caudal_series_with_the_processes, 15 Interclavicle / lateral_processes_in_contact_with_clavicles_for_less_than_half lateral_processes_in_contact_with_clavieles_for_more_than_half, 16 'Parabasisphenoid (this study)' / basipterygoid_processes_lack_anteroventral_crests. basipterygoid_processes_with_anteroventral_crests_that_approach, ; MATRIX [ 10 20 ] [ . . ] Anolis_acutus 0021021134507100 Anolis_aeneus 0000011134306100 Anolis_agassizi 0000011134306100 Anolis_ahli 002104113{34}{56}08211 Anolis_aliniger 00{12}0041134407110 Anolis_alutaceus 002104113{56}407110 Anolis_angusticeps 002104113{45}408110 Anolis_bahorucoensis 0121011134407110 Anolis_barahonae 0021021133307100 Anolis_bartschi 0021041134507110 Anolis_bimaculatus 0021031134507100 Anolis_brevirostris 00210{12}1134507100 Anolis_carolinensis 0021041134407110 Anolis_christophei 00{12}1041134507110 Anolis_coelestinus 00?0041134406110 Anolis_cristatellus 01211{12}1144508{12}01 Anolis_cuvieri 0021021133307100 Anolis_distichus 0021011133507100 Anolis_equestris 0021011133{12}07110 Anolis_etheridgei 0121?41136{34}07110 Anolis_garmani 0121041133407210 Anolis_grahami 0121041133{45}07210 Anolis_humilis 001104114{34}508210 Anolis_insolitus 11{12}1041?3{45}?17110 Anolis_krugi 012131114{34}508101 Anolis_limifrons 0011041134407210 Anolis_lineatopus 0121041133407210 Anolis_lineatus 0021041133408210 Anolis_loysiana 002104113{45}408110 Anolis_luciae 0000011134306100 Anolis_lucius 0021041134507110 Anolis_luteogularis 0021011133{12}07110 Anolis_marcanoi 102124113{34}508100 Anolis_maynardi 0021041134407110 Anolis_microtus ?000011133{0123}0310? Anolis_occultus 000004114{34}203110 Anolis_olssoni 1021041135407110 Anolis_ophiolepis 102104113{34}508210 Anolis_paternus 0021041135408110 Anolis_pumilis 1011041135508110 Anolis_richardi 000001113{45}306100 Anolis_sagrei 1021041134608211 Anolis_sheplani 01{12}1041134?11110 Anolis_strahmi 1021241133508100 Anolis_stratulus 00210{34}1134507100 Anolis_valencienni 0021041133408210 Anolis_vanidicus 01010411354?7110 Anolis_vermiculatus 0121041133{45}07110 Anolis_wattsi 00210{34}1134507110 Chamaeleolis_chamaeleonides 0021410033?12100 Chamaeleolis_guamuhaya 0021410033?12100 Chamaelinorops_barbouri 100?041135?14310 Diplolaemus_darwinii 000000013020501? Phenacosaurus_nicefori 000?01114{23}?11100 Polychrus_acutirostris 1000000101?1?100 ; END; [ The following blocks are output data for analysis step 887 ] BEGIN TREES; TITLE Tb5664; LINK TAXA = TaxaForAnalysisStep887; TREE Fig._9 = [&R] (Diplolaemus_darwinii,(Polychrus_acutirostris,((Anolis_richardi,Anolis_aeneus,Anolis_luciae,Anolis_agassizi),Anolis_microtus,(Anolis_occultus,Phenacosaurus_nicefori),((Anolis_luteogularis,Anolis_equestris),Chamaeleolis_chamaeleonides,(Anolis_barahonae,Anolis_cuvieri),Anolis_distichus,(Anolis_brevirostris,((Anolis_cristatellus,Anolis_krugi),Anolis_bahorucoensis),Anolis_stratulus,Anolis_acutus,Anolis_bimaculatus,(Anolis_christophei,Anolis_wattsi,Anolis_bartschi,Anolis_lucius,(((((((Anolis_sheplani,Anolis_vanidicus),Anolis_insolitus),(Chamaelinorops_barbouri,Chamaeleolis_guamuhaya)),Anolis_pumilis),Anolis_olssoni),Anolis_etheridgei,(Anolis_loysiana,Anolis_paternus,Anolis_angusticeps),Anolis_alutaceus),(((Anolis_lineatopus,Anolis_valencienni,(Anolis_sagrei,Anolis_ahli,Anolis_ophiolepis,Anolis_humilis,(Anolis_marcanoi,Anolis_strahmi))),(Anolis_garmani,Anolis_lineatus,Anolis_grahami,Anolis_vermiculatus)),Anolis_limifrons),(Anolis_coelestinus,Anolis_aliniger),Anolis_carolinensis,Anolis_maynardi))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3567] END;