#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 13, 2024; 18:32 GMT

TreeBASE (cc) 1994-2008

Study reference:
Van poucke K., Franceschini S., Webber J.F., Vercauteren A., Judith T., Mccracken
A.R., Heungens K., & Brasier C. 2012. Discovery of a fourth evolutionary lineage
of Phytophthora ramorum: EU2. Fungal Biology, 116(11): 1178-1191.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S12540]

[ The following blocks are input data for analysis step 8875 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep8875;
        DIMENSIONS NTAX=6;
        TAXLABELS
            Phytophthora_hibernalis
            Phytophthora_lateralis
            Phytophthora_ramorum_EU1
            Phytophthora_ramorum_EU2
            Phytophthora_ramorum_NA1
            Phytophthora_ramorum_NA2
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M14330]

	TITLE alignment_Prv11;
	LINK TAXA = TaxaForAnalysisStep8875;
	DIMENSIONS NCHAR=305;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                    10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300     ]
[                                     .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .     ]
Phytophthora_hibernalis      GAAGGGATGTCTATTAGTTTCAGCTAAACATGAAATAAAAAAAATTAACAAAATAGGAAAAAGAGGAAAACAATACCATACTGTTTTTTGTGCTAATACTATCGAAATCAAATTTAACGACTTAGCACAAACAATTACAGAAAGAATTGAAAATCCAATAGTTAATTCATAAGAAATCATTTGAGCTGTAGATCTTAATGCACCTAAAAAAGAATATTTAGAATTACTAGACCAACCTCCAATAATAATACCATAAACCCCTAATGATGATATTGCTAATAAATATAAAATACCTATATTTAATT
Phytophthora_lateralis       GAATGGATGTCGATTAGTTTCAGCTAAACATGATATAAAAAAAATTAAAAAAATAGGAAAAAGAGGAAAACAATACCATACGGTTTTTTGAGCTAATACTATAGAAATTAAGTTTAAAGATTTAGCACAAACAATTACAGAAAGAATAGAAAATCCAATCGTTAATTCATAAGAAATCATTTGTGCAGTTGATCTTAATGCACCTAAAAAGGAATATTTTGAATTACTTGACCAACCACCAATAATAATACCATAAACACCTAATGATGAAATTGCTAATAAATATAAAATACCTATATTTAATT
Phytophthora_ramorum_EU1     AAAAGGATGTCGATTTGTTTCAGCTAAACATGATATAAAAAAAATTAAAAAAATGGGAAAAAGTGGAAAACAATACCATATAGTTTTTTGTGCTAATACTATTGAAATTAAATTTAAAGATTTTGCACAAACTATTACAGAAAGAATAGAAAATCCAATTGTTAATTCATAAGAAATCATTTGTGCAGTTGATCTTAAAGCACCTAAAAAAGAATATTTAGAATTACTAGACCAACCACCAATAATAATACCATAAACACCTAATGATGAGATTGCTAATAAATATAAAATACCTATATTTAATT
Phytophthora_ramorum_EU2     AAAAGGATGTCGATTTGTTTCAGCTAAACATGATATAAAAAAAATTAAAAAAATGGGAAAAAGTGGAAAACAATACCATACAGTTTTTTGTGCTAATACTATTGAAATTAAATTTAAAGATTTCGCACAAACTATTACAGAAAGAATAGAAAATCCAATTGTTAATTCATAAGAAATCATTTGTGCAGTTGATCTTAAAGCACCTAAAAAAGAATATTTAGAATTACTAGACCAACCACCAATAATAATACCATAAACACCTAATGATGAGATTGCTAATAAATATAAAATACCAATATTTAATT
Phytophthora_ramorum_NA1     AAAAGGATGTCGATTTGTTTCAGCTAAACATGATATAAAAAAAATTAAAAAAATGGGAAAAAGTGGAAAACAATACCATACAGTTTTTTGTGCTAATACTATTGAAATTAAATTTAAAGATTTTGCACAAACTATTACAGAAAGAATAGAAAATCCAATTGTTAATTCATAAGAAATCATTTGTGCAGTTGATCTTAAAGCACCTAAAAAAGAATATTTAGAATTACTAGACCAACCACCAATAATAATACCATAAACACCTAATGATGAGATTGCTAATAAATATAAAATACCTATATTTAATT
Phytophthora_ramorum_NA2     AAAAGGATGTCGATTTGTTTCAGCTAAACATGATATAAAAAAAATTAAAAAAATGGGAAAAAGTGGAAAACAATACCATACAGTTTTTTGTGCTAATACTATTGAAATTAAATTTAAAGATTTTGCACAAACTATTACAGAAAGAATAGAAAATCCAATTGTTAATTCATAAGAAATCATTTGTGCAGTTGATCTTAAAGCACCTAAAAAAGAATATTTAGAATTACTAGACCAACCACCAATAATAATACCATAAACACCTAATGATGAGATTGCTAATAAATATAAAATACCAATATTTAATT
;
END;

[ The following blocks are output data for analysis step 8875 ]
BEGIN TREES;
      TITLE Prv11;
      LINK TAXA = TaxaForAnalysisStep8875;
      TREE Fig._2_Prv11 = [&R] (((Phytophthora_ramorum_EU2:0.00360542,Phytophthora_ramorum_NA2:6.05E-6)0.6530:0.00332388,(Phytophthora_ramorum_EU1:0.00363073,Phytophthora_ramorum_NA1:0.0)0.4370:0.00306811)0.9530:0.04569403,Phytophthora_lateralis:0.02983953,Phytophthora_hibernalis:0.07744255);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr57185]


END;