#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 06, 2025; 13:48 GMT

TreeBASE (cc) 1994-2008

Study reference:
Bogler D., & Simpson B. 1996. Phylogeny of Agavaceae based on ITS rDNA sequence variation.
American Journal of Botany, 83: 1225-1235.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S617]

[ The following blocks are input data for analysis step 920 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep920;
        DIMENSIONS NTAX=46;
        TAXLABELS
            Agave_americana
            Agave_attenuata
            Agave_dasylirioides
            Agave_lechuguilla
            Agave_striata
            Aloe_bainesii
            Asparagus_officinalus
            Aspidistra_elatior
            Beaucarnea_purpusii
            Beaucarnea_recurvata
            Beschorneria_albiflora
            Beschorneria_yuccoidesTur
            Calibanus_hookeri
            Camassia_scilloides
            Convallaria_majalis
            Cordyline_terminalis
            Dasylirion_berlandieri
            Dasylirion_longissimum
            Dasylirion_texanum
            Dasylirion_wheeleria
            Dracaena_marginata
            Furcraea_pubescens
            Furcraea_quichensis
            Hemerocallis_fulva
            Hesperaloe_funifera
            Hesperaloe_parviflora
            Hosta_ventricosa
            Hypoxis_hirsuta
            Liriope_muscari
            Maianthemum_racemosum
            Manfreda_scabra
            Manfreda_virginica
            Nolia_lindheimeriana
            Nolina_microcarpa
            Nolina_nelsonii
            Nolina_parviflora
            Nolina_texana
            Polianthes_geminiflora
            Polianthes_pringlei
            Polygonatum_biflorumm
            Prochnyanthes_mexicana
            Sansevieria_trifasciata
            Xanthorrhoea_sp.
            Yucca_elata
            Yucca_trechuleana
            Yucca_whipplei
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3612]

	TITLE Not_Available;
	LINK TAXA = TaxaForAnalysisStep920;
	DIMENSIONS NCHAR=2;
	FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4 5 6 7 8" MISSING=? GAP= -;
	CHARSTATELABELS
		2  family / Convallariacae Asparagaceae Dracaenaceae Asteliaceae Nolinaceae Xanthorrhoeaceae Hypoxidaceae Hemerocallidaceae Funkiaceae,
		;

MATRIX
Agave_americana               ?5
Agave_attenuata               ??
Agave_dasylirioides           ?5
Agave_lechuguilla             ?5
Agave_striata                 ?5
Aloe_bainesii                 ??
Asparagus_officinalus         ?1
Aspidistra_elatior            ?0
Beaucarnea_purpusii           ?4
Beaucarnea_recurvata          ?4
Beschorneria_albiflora        ?5
Beschorneria_yuccoidesTur     ?5
Calibanus_hookeri             ?4
Camassia_scilloides           ??
Convallaria_majalis           ?0
Cordyline_terminalis          ?3
Dasylirion_berlandieri        ??
Dasylirion_longissimum        ??
Dasylirion_texanum            ?4
Dasylirion_wheeleria          ?4
Dracaena_marginata            ?2
Furcraea_pubescens            ?5
Furcraea_quichensis           ?5
Hemerocallis_fulva            ?7
Hesperaloe_funifera           ?5
Hesperaloe_parviflora         ?5
Hosta_ventricosa              ?8
Hypoxis_hirsuta               ?6
Liriope_muscari               ?0
Maianthemum_racemosum         ?0
Manfreda_scabra               ?7
Manfreda_virginica            ?5
Nolia_lindheimeriana          ?4
Nolina_microcarpa             ?4
Nolina_nelsonii               ?4
Nolina_parviflora             ?4
Nolina_texana                 ?4
Polianthes_geminiflora        ?5
Polianthes_pringlei           ?5
Polygonatum_biflorumm         ??
Prochnyanthes_mexicana        ?5
Sansevieria_trifasciata       ?2
Xanthorrhoea_sp.              ?5
Yucca_elata                   ?5
Yucca_trechuleana             ?5
Yucca_whipplei                ?5
;
END;

[ The following blocks are output data for analysis step 920 ]
BEGIN TREES;
      TITLE Tb5696;
      LINK TAXA = TaxaForAnalysisStep920;
      TREE Fig._3 = [&R] ((((((((((((Prochnyanthes_mexicana,Polianthes_pringlei,Polianthes_geminiflora),(Manfreda_scabra,Manfreda_virginica)),(Agave_attenuata,Agave_americana,Agave_lechuguilla)),(Agave_striata,Agave_dasylirioides)),((Beschorneria_yuccoidesTur,Beschorneria_albiflora),Furcraea_pubescens)),((((Hesperaloe_parviflora,Hesperaloe_funifera),Yucca_whipplei),(Yucca_trechuleana,Yucca_elata)),Camassia_scilloides)),Hosta_ventricosa),Cordyline_terminalis),(((((Dasylirion_texanum,Dasylirion_wheeleria),(Dasylirion_longissimum,Dasylirion_berlandieri)),((Beaucarnea_purpusii,Beaucarnea_recurvata),Calibanus_hookeri)),((Nolia_lindheimeriana,Nolina_nelsonii),Nolina_parviflora)),((Maianthemum_racemosum,Liriope_muscari,(Sansevieria_trifasciata,Dracaena_marginata)Asparagaceae),(Polygonatum_biflorumm,Aspidistra_elatior)))),Asparagus_officinalus),Xanthorrhoea_sp.),Aloe_bainesii);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1101]


END;