#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on December 15, 2025; 18:32 GMT TreeBASE (cc) 1994-2008 Study reference: Kelly L.J., Leitch A.R., Clarkson J.J., Knapp S., & Chase M. 2013. Reconstructing the complex evolutionary origin of wild allopolyploid tobaccos (Nicotiana section Suaveolentes). Evolution, 67(1): 80-94. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S12975] [ The following blocks are input data for analysis step 9639 ] BEGIN TAXA; TITLE TaxaForAnalysisStep9639; DIMENSIONS NTAX=53; TAXLABELS Anthocercis_sylvicola Anthocercis_viscosa Nicotiana_acaulis Nicotiana_africana_1 Nicotiana_africana_2 Nicotiana_alata Nicotiana_attenuata Nicotiana_benavidesii Nicotiana_bonariensis Nicotiana_cavicola_1 Nicotiana_cavicola_2 Nicotiana_cordifolia Nicotiana_corymbosa Nicotiana_debneyi_1 Nicotiana_excelsior_1 Nicotiana_excelsior_2 Nicotiana_forgetiana Nicotiana_forsteri_2 Nicotiana_glutinosa Nicotiana_goodspeedii_1 Nicotiana_goodspeedii_2 Nicotiana_kawakamii Nicotiana_knightiana Nicotiana_langsdorffii Nicotiana_longiflora Nicotiana_maritima_1 Nicotiana_maritima_2 Nicotiana_megalosiphon_1 Nicotiana_megalosiphon_2 Nicotiana_miersii Nicotiana_mutabilis Nicotiana_noctiflora Nicotiana_obtusifolia_var._obtusifolia Nicotiana_obtusifolia_var._palmeri Nicotiana_occidentalis_1 Nicotiana_occidentalis_2 Nicotiana_otophora Nicotiana_paniculata Nicotiana_pauciflora Nicotiana_petunioides Nicotiana_plumbaginifolia Nicotiana_raimondii Nicotiana_rotundifolia_1 Nicotiana_rotundifolia_2 Nicotiana_solanifolia Nicotiana_sylvestris Nicotiana_thyrsiflora Nicotiana_tomentosa Nicotiana_tomentosiformis Nicotiana_undulata Nicotiana_velutina_1 Nicotiana_velutina_2 Symonanthus_aromaticus ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M13635] TITLE GS_5_alignment_diploids_and_sect_Suaveolentes; LINK TAXA = TaxaForAnalysisStep9639; DIMENSIONS NCHAR=408; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Anthocercis_sylvicola GTTATGCCAGGGCAGGTACCATTTTCGTCACATCTC--TTGTCTAATAATAGTAACATCACTGTCAGTTATAGTCCTCTAATTGGAGGATT---CCCTATATTGCTT---GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTAGAGGTAAT-TTTCTTCCCAAATCTGCATAAATGCCTTTGCAGGAAAGGTCATCTGGCGAGCATACAATCCTAATTCAACTAATGATATACTTGAATAACTCAAATAATGATATCTCC-TAAGTCCAGCATGCACCTTATCAAATTCTGTTCTAGGTCCTAG----------------------------------TCCCTTGACTGTTGCAATGGTTTA Anthocercis_viscosa GTTATGCCAGGGCAGGTACCATTTTCGTCACATCTC--TTGTCTAATAATAGTAACATCACTGTCAGTTATAGTCCTCTAATTGGAGGATT---CCCTATATTGCTT---GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTAGAGGTAAT-TTTCTTCCCAAATCTGCATAAATGCCTTTGCAGGAAAGGTCATCTGGCGAGCATATAATCCTAATTCAACTAATGATATACTTGAATAACTCAAATAATGATATCTCCCTAAGTCCAGCATGCACCTTATCAAATTTTGCTCTAGGTCCTAG----------------------------------TCCCTTGACTGTGGCAATGGTTTA Nicotiana_acaulis GTTATGCCAGGACAGGTACCGTTTTCGTCACATCTT--TTGTCTATCGC-AATAACATCATTGTCAGTTATAGTCCTCTAATTGGAGAATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_africana_1 GTTATGCCAGGACAGGCACAATATTTGTTATATTTT-TTTGTCTATTAC-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGCGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_africana_2 GTTATGCCAGGACAGGTACCATTTTCGTCGCGTCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGCCTCTAATTGGAGAATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTGGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Nicotiana_alata GTTATGCCAGGACAGGTACAATTTCTGTCACATCTC--TTGTCTATCAC-AATAACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_attenuata GTTATGCCGGGACAGGTACAATATTTGTTATATTTT-TTTGTCTATTAC-AATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGAGT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_benavidesii GTTATGCCAGGACAGGTACAATTTCCGCCACATCTC--TTGTCTATCAC-AACAACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGCGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTCACTGTTGCAATAGTTTA Nicotiana_bonariensis GTTATGCCAGGACAGGTACAATTTCCGTCACATCTC--TTGTCTATCAC-AATTACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_cavicola_1 GTTATGCCAGGACAGGTACACTATTTGTTGTATTTT-TTTGTCTATTAT-GATAACATCATTTTCACTTATAGTCCTTTAATTGGAGGATT---AACTTTATTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAATCTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_cavicola_2 GTTATGCCAGGACAGGTACCATTTTCGTCACATCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGGCTCTAATTGGAGAATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Nicotiana_cordifolia GTTATGCCAGGACAGGTACAATTTCCGCCACATCTC--TTGTCTATCAC-AGTAACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCGGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTCACTGTTGCAATAGTTTA Nicotiana_corymbosa GTTATGCCGGGACAGGTACAATATTTGTTATATTTT-TTTGTCTATTAC-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGAGT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGCATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_debneyi_1 GTTATGCCAGGACAGGTACACTATTTGTTGTATTTTTTTTGTCTATTAT-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGATT---AACTTTATTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAATTTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_excelsior_1 GTTATGCCAGGACAGGTACACTATTTGT-GTATTTT-TTTGTCTATTAT-GATAACATTACTTTCACTTATAGTCCTTCAATTGGAGGATT---AACTTTATTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGCGATCATATCTGGTGTGCTAGGTACATCCTTGAGGTAATTTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATTATTTA Nicotiana_excelsior_2 GTTATGCCAGGACAGGTACCATTTTCGTCACATCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGCCCATAATTGGAGAATT---GACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Nicotiana_forgetiana GTTATGCCAGGACAGGTACAATTTCCGTCACATCTC--TTGTCTATCAC-AATTACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_forsteri_2 GTTATGCCAGGACAGGTACCATTTTCGTCACATCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGCCTCTAATTGGAGAATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGACCACATCTGGTGTGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Nicotiana_glutinosa GTTATGCCAGGACAGGTACCATATTTGTCACATCTC--TTGTCTAATAC-AATAACATCACTGTCACTTATAGTCCTCTAATTGGAGAATT---AACTAAATT-TTTG--GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCGGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGAAATGGTTTA Nicotiana_goodspeedii_1 GTTATGCCAGGACAGGTACACTATTTGTTGTATTTTTTTTGTCTATTAT-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGATT---AACTTTGTTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAATTTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_goodspeedii_2 GTTATGCCAGGACAGGTACCATTTTCGTCACATCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGCCTCTAATTGGAGAATT---GACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATTCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTCGACTGTTGCAATGGTTTG Nicotiana_kawakamii GTTATGCCAGGACAGGTACCATATTCGTCACATCTC--TTGTCTAATAC-AATAACATCACTGTCACTTATAGTCCTCTAATTGGAGGATT---AACTAAATT-TTTT--GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCGGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGAAATGGTTTA Nicotiana_knightiana GTTATGCCAGGACAGGTACAATTTCTGCCACATCTC--TTGTCTATCAC-AATAACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGCGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTCACTGTTGCAATAGTTTA Nicotiana_langsdorffii GTTATGCCAGGACAGGTACAATTTCTGTCACATCTC--TTGTCTATCAC-AATAACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_longiflora GTTATGCCAGGACAGGTACAATTTCTGTCACATCTC--TTGTCTATCAC-AATAACATCTCTGTCAGTTATAGTTCTCTAATTGGAGGATA---AACTTTATTGCTTTT-ATGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_maritima_1 GTTATGCCAGGACAGGTACACTATTTGTTGTATTTTTTTTGTCTATTAT-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGATT---AACTTTGTTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAATTTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_maritima_2 GTTATGCCAGGACAGGTACCATTTTCGTCACATCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGCCTCTAATTGGAGAATT---GACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATTCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTCGACTGTTGCAATGGTTTG Nicotiana_megalosiphon_1 GTTACGCCAGGACAGGTACACTATTTGTTGTATTTTTTTTGTCTATTAT-GATAACATCACTTTCACTTATAGTCCTTTAACTGGAGGATT---AACTTTGTTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAATTTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_megalosiphon_2 GTTATACCAGGACAGGTACCATTTTCGTCACATCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGCCTCTAATTGGAGAATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Nicotiana_miersii GTTATGCCGGGACAGGTGCAATATTTGTTATAT-----TTGTCTATTAC-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGAGT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_mutabilis GTTATGCCAGGACAGATACAATTTCCGTCACATCTC--TTGTCTATCAC-AATAACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_noctiflora GTTATGCCAGGACAGGTACAATATTTGTCACATTTT-TTTATCTATTAA-GATAACATCACTTTCACTTGTATTCCTTTAATTGGAGGATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGCGCCAGATACATCCTTGAGGTAAT-TTCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGATTGTTGAGATGGTTTA Nicotiana_obtusifolia_var._obtusifolia GTTATGCCAGGCCAGGTACCATTTTCGTCACATT----TTGTCTATCAC-AATAACATCACTGTCAGTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTCGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGATTTA Nicotiana_obtusifolia_var._palmeri GTTATGCCAGGCCAGGTACCATTTTCATCACATT----TTGTCTATCAC-AATAACATCACTGTCAGTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTCGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGATTTA Nicotiana_occidentalis_1 GTTATGCCAGGACAGGTACACTATTTGT-GTATTTT-TTTGTCTATTAT-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGATT---AACTTTATTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGCGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAATTTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_occidentalis_2 GTTATGCCAGGACAGGTACCATTTTCGTCACATCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGCCTCTAATTGGAGAATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Nicotiana_otophora GTTATGCCAGGACAGGTACCATATTCATCACATCTC--TTGTCTAATAC-AATATCATCACTGTCACTTATAGTCCTCTAATTGGAGGATT---AACTAAATT-TTTT--GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTATGGGAATTGAAGCGGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGAAATGGTTTA Nicotiana_paniculata GTTATGCCAGGACAGGTACAATTTCCGCCACATCTC--TTGTCTATCAC-AATAACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGCGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTCACTGTTGCACTAGTTTA Nicotiana_pauciflora GTTATGCCGGGACAGGTACAATATTTGTTATATTTT-TTTGTCTATTAC-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGAGT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_petunioides GTTATGCCAGGACAGGTACAATATTTGTCACATTTT-TTTATCTATTAA-GATAACATCACTTTCACTTGTATTCCTTTAATTGGAGGATT---AATTTTATTGTTTTT-GTGGCAGTGGGAACTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGCGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGATTGTTGCAATGGTTTA Nicotiana_plumbaginifolia GTTATGCCAGGACAGGTACAATTTCTGTCACATCTC--TTGTCTATCAC-AATAACATCTCTGTCAGTTATAGTTCTCTAATTGGAGGATA---AACTTTATTGCTTTT-ATGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_raimondii GTTATGCCAGGACAGGTACAATTTCCGCCACATCTC--TTGTCTATCAC-AATAACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGCGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATATATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTCACTGTTGCAATAGTTTA Nicotiana_rotundifolia_1 GTTATGCCAGGACAGGTACACTATTTGT-GTATTTT-TTTGTCTATTAT-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGATT---AACTTTATTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATCGAAGCTGGCGATCATATATGGTGTGCTAGATACATCCTTGAGGTAATTTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGATTTA Nicotiana_rotundifolia_2 GTTATGCCAGGACAGGTACCATTTTCGCCACATCTT--TTGTGTATCAC-AATAACATCACTTTCAGTTATAGGCCTCTAATTGGAGAATT---GACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Nicotiana_solanifolia GTTATGCCAGGACAGGTACAATTTCCGCCACATCTC--TTGTCTATCAC-AATAACATCAC---CACTTATAGTCCTCCAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTCACTGTTGCAATAGTTTA Nicotiana_sylvestris GTTATGCCAGGACAGGTACCATTTTCTTCACATCTT--TTGTCTATCAC-AATAACATCACTGTCAGTTATAGGCCTCTAATTGGAGAATT---AACTTTAATGTTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGCGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Nicotiana_thyrsiflora GTTATGCCTGGACAGGTACAATTTTCGCCACATTTC--TTGTCTACCAC-AATAACATCAC---CACTTATAGTCCGCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_tomentosa GTTACGCCAGGACAGGTACCATATTCGTCACATCTC--TTGTCTAATAC-AATAACATCACTGTCACTTATAGTCCTCTAATTGGAGGATT---AACTAAATT-TTTT--GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCGGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGAAATGGTTTA Nicotiana_tomentosiformis GTTATGCCAGGACAGGTACCATATTCGTCACATCTC--TTGTCTAATAC-AATAACATCACTGTCACTTATAGTCCTCTAATTGGAGGATT---AACTAAATT-TTTT--GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCGGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGAAATGGTTTA Nicotiana_undulata GTTATGCCAGGACAGGTACAATTTCCGTCACATCTC--TTGTCTATCAC-AATAACATCAC---CGCTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTTTGTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGTGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTTCAATGGTTTA Nicotiana_velutina_1 GTTATGCCAGGACAGGTACACTATTTGT-GTATTTT-TTTGTCTATTAT-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGATT---AACTTTATTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATCGAAGCTGGCAATCATATATGGTGTGCTAGATACATCCTTGAGGTAATTTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGATTTA Nicotiana_velutina_2 GTTATGCCAGGACAGGTACCATTTTCGCCACATCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGCCTCTAATTGGAGAATT---GACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Symonanthus_aromaticus GTTATGCCAGGGCAGGTATCGTTTTCGTCACATCCG--TTGTCTAACAG-ACTAACATCACTGTCAGTTATAGTCCTCTAATTGGAGGATT---AACTAAATTATTT---GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCTTCCCAAACCTGCATAAATGCCTTTGCAGGAAAGGGCATCTAGCCAGCATATAATCCTAATTGAACTAATGA--TACTTGAATACCTCAAATTATGATATCCCC-TAAGTCCAGCATGCAACTCATCAA-CTATGCTCTAGGACCTAGTGGGCATGAAATGAGAGTTATTACCTAAATTAGTTCCTCTGATCGTTGCAATGGTTTA ; END; BEGIN SETS; CHARSET excluded (CHARACTERS = GS_5_alignment_diploids_and_sect_Suaveolentes) = 204-384; END; [ The following blocks are output data for analysis step 9639 ] BEGIN TREES; TITLE GS_5_alignment_diploids_and_sect_Suaveolentes; LINK TAXA = TaxaForAnalysisStep9639; TREE con_all_compat = [&R] (Nicotiana_velutina_1:0.0075,Nicotiana_rotundifolia_1:0.003233,(Nicotiana_excelsior_1:0.022035,(Nicotiana_occidentalis_1:0.003213,(Nicotiana_debneyi_1:0.003103,(((Nicotiana_maritima_1:0.00311,Nicotiana_goodspeedii_1:0.003095):0.003339,Nicotiana_megalosiphon_1:0.012041):0.007502,(Nicotiana_cavicola_1:0.011692,((Nicotiana_africana_1:0.011971,(((Nicotiana_attenuata:0.007533,Nicotiana_miersii:0.007702):0.003083,Nicotiana_corymbosa:0.007576):0.003152,Nicotiana_pauciflora:0.003101):0.012209):0.004246,(((((((Nicotiana_cordifolia:0.011889,Nicotiana_solanifolia:0.00738):0.003325,(Nicotiana_paniculata:0.007423,(Nicotiana_knightiana:0.007482,(Nicotiana_raimondii:0.007395,Nicotiana_benavidesii:0.007352):0.003161):0.003237):0.007357):0.014043,Nicotiana_thyrsiflora:0.025492):0.007262,((Nicotiana_undulata:0.016421,Nicotiana_mutabilis:0.007385):0.003151,(Nicotiana_forgetiana:0.003156,Nicotiana_bonariensis:0.003112):0.007501):0.003076):0.004471,((Nicotiana_plumbaginifolia:0.00308,Nicotiana_longiflora:0.003055):0.025518,(Nicotiana_langsdorffii:0.003164,Nicotiana_alata:0.003128):0.003963):0.00682):0.011648,(((Nicotiana_acaulis:0.02548,(((((Nicotiana_occidentalis_2:0.003031,Nicotiana_cavicola_2:0.007426):0.003095,(Nicotiana_megalosiphon_2:0.007388,Nicotiana_forsteri_2:0.007393):0.003033):0.003058,Nicotiana_africana_2:0.016434):0.003981,(((Nicotiana_velutina_2:0.003103,Nicotiana_rotundifolia_2:0.007443):0.007454,(Nicotiana_maritima_2:0.003027,Nicotiana_goodspeedii_2:0.003062):0.01183):0.003416,Nicotiana_excelsior_2:0.012043):0.007332):0.021376,Nicotiana_sylvestris:0.016466):0.018231):0.010582,(Nicotiana_obtusifolia_var._obtusifolia:0.003087,Nicotiana_obtusifolia_var._palmeri:0.007334):0.024382):0.006958,(((((Nicotiana_tomentosiformis:0.003033,Nicotiana_tomentosa:0.007446):0.003101,(Nicotiana_kawakamii:0.003059,Nicotiana_glutinosa:0.016457):0.003072):0.003104,Nicotiana_otophora:0.016303):0.026001,Symonanthus_aromaticus:0.057859):0.008468,(Anthocercis_viscosa:0.007291,Anthocercis_sylvicola:0.003092):0.040252):0.015038):0.015783):0.043048,(Nicotiana_petunioides:0.01236,Nicotiana_noctiflora:0.01656):0.041636):0.011941):0.025038):0.004455):0.003172):0.007641):0.007544):0.012699); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr55093] END;