#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 21, 2024; 10:38 GMT TreeBASE (cc) 1994-2008 Study reference: Nagel J.H., Gryzenhout M., Slippers B., Wingfield M.J., Hardy G.E., Stukely M., & Burgess T.I. 2013. Characterization of Phytophthora hybrids from ITS clade 6 associated with riparian ecosystems in South Africa and Australia. Fungal Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S12996] [ The following blocks are input data for analysis step 9652 ] BEGIN TAXA; TITLE TaxaForAnalysisStep9652; DIMENSIONS NTAX=35; TAXLABELS Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37727_PG Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37729_PG Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37730_PG Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_MUCC774_PG Phytophthora_fluvialis_CBS129424 Phytophthora_fluvialis_MUCC772 Phytophthora_fragariae_PFF309_DQ092858 Phytophthora_gonapodyides_MUCC761 Phytophthora_gonapodyides_MUCC776 Phytophthora_litoralis_VHS17085 Phytophthora_litoralis_VHS20763 Phytophthora_megasperma_DDS3432 Phytophthora_megasperma_VHS17183 Phytophthora_pgchlamydo_DDS3753 Phytophthora_pgchlamydo_SLPA121 Phytophthora_pgchlamydo_VHS6595 Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC777_A Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC777_PG Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC778_PG Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC779_PG Phytophthora_thermophila_VHS13530 Phytophthora_thermophila_VHS7474 Phytophthora_thermophila_X_Phytophthora__taxon_PgChlamydo_MUCC783_PG Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo__MUCC783_T Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo__MUCC784_PG Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo_MUCC784_T Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37731_T Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37732_T Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37733_T Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37734_T Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC780_T Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC781_T Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC782_T Phytophthora_thermophila_×_Phytophthora_amnicola_VHS22715_T Phytophthora_thermophila_×_Phytophthora_amnicola_VHS5185_T ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M13658] TITLE Phytophthora_hybrids_GPA; LINK TAXA = TaxaForAnalysisStep9652; DIMENSIONS NCHAR=307; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37727_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37729_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37730_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_MUCC774_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_fluvialis_CBS129424 ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAAGCAAGAGCATGAAGCGGAGTTAGATTCTCCA----------CAGAGTC-AACACGGACACGGCACTGA--ACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCGAGCAGCAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCGGAGTCGCTCATCTGGGACGCACAGAGTCCA Phytophthora_fluvialis_MUCC772 ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAAGCAAGAGCATGAAGCGGAGTTAGATTCTCCA----------CAGAGTC-AACACGGACACGGCACTGA--ACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCGAGCAGCAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCGGAGTCGCTCATCTGGGACGCACAGAGTCCA Phytophthora_fragariae_PFF309_DQ092858 ATAATTGGTGTGCAGTGCCGCTTCTCCTCATCTGTTAGCGGGGCGCCATACAAAATCTGCAGCGCCAAACAAAACCCAAAATTAGT----CCTCG--CAACTCCTACCGCGAACAAGTCAACGT--CCG---ACGCACCTTCATCTGTTTGAAGACCGTACTCTTGCCTGACTCGCCAGCTCCCAGCAGCAGCAACTTGACCTTCTCCTGCTCCACGCGGTGAGCCTCCTCGTTCTTGGCTTCAATCTCGCGCGACTTGGCCATGGCCTGTCGATCGGTATCGGTCATCTGGGACGCACAGAGTCC- Phytophthora_gonapodyides_MUCC761 ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTGAGCGCTGCGCCGTACAAAATTTGAAG---AGA-----AAACGGAGTTAGCTT-TCCTGAA--GACATCAGACTC-AA---GCGCAGGT---TGTGCACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATATCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_gonapodyides_MUCC776 ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTGAGCGCTGCGCCGTACAAAATCTGAAG---AGA-----AAACGGAGTTAGCTT-TCCTGAA--GACATCAGACTC-AA---GCGCAGGT---TGTGCACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATATCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_litoralis_VHS17085 ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAGTTAGTTT-TCCGGGAGCGACGCCGGACTC-AACACGGACACGGGACTGTGGGCGCACCTTCATCTGCTTGAACACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_litoralis_VHS20763 ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAGTTAGTTT-TCCGGGAGCGACGCCGGACTC-AACACGGACACGGGACTGTGGGCGCACCTTCATCTGCTTGAACACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_megasperma_DDS3432 ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTGAGCGCTGCGCCGTACAAAATCTGAAAGCAAGCAAATGAAACAGAATTAG------------CGACGCCGGACTC-AACACGGACACGG-ACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTTTTGCCTGACTCGCCTGCTCCTAGCAAAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTATCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_megasperma_VHS17183 ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTGAGCGCTGCGCCGTACAAAATCTGAAAGCAAGCAAATGAAACAGAATTAG------------CGACGCCGGACTC-AACACGGACACGG-ACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTTTTGCCTGACTCGCCTGCTCCTAGCAAAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTATCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_pgchlamydo_DDS3753 ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAACAACATGAAACGGAATTAGTTT-TCCGGGAGCGACGCCAGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_pgchlamydo_SLPA121 ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_pgchlamydo_VHS6595 ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAACAACATGAAACGGAATTAGTTT-TCCGGGAGCGACGCCAGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC777_A ATAATTGGCGTGCAGTGCCGCTTCTCCTCTTCAGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAAAATGAAACGGAGTTAGTTT-TCCAGGAGCGACGCCGGAGTC-AACACGGACACGGGACTGAGGACGCACCTTCATCTGCTTGAAGACTGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTAACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTAGCCATCGCCACCCGATCAGAGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC777_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC778_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC779_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_thermophila_VHS13530 ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCAGTCATCTGGGACGCACAGAGTCCA Phytophthora_thermophila_VHS7474 ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCAGTCATCTGGGACGCACAGAGTCCA Phytophthora_thermophila_X_Phytophthora__taxon_PgChlamydo_MUCC783_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCCGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGCCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo__MUCC783_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo__MUCC784_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCCGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGCCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo_MUCC784_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37731_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37732_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCGGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37733_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37734_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCAGTCATCTGGGACGCACAGAGTCCA Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC780_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC781_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCAGTCATCTGGGACGCACAGAGTCCA Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC782_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGTACGC-AACACGGACACGG-ACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_thermophila_×_Phytophthora_amnicola_VHS22715_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGTACGC-AACACGGACACGG-ACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_thermophila_×_Phytophthora_amnicola_VHS5185_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGTACGC-AACACGGACACGG-ACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA ; END; [ The following blocks are output data for analysis step 9652 ] BEGIN TREES; TITLE GPA1_MP; LINK TAXA = TaxaForAnalysisStep9652; TREE GPA1_MP_4 = [&R] (((((((Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC777_A:3.0,(Phytophthora_fluvialis_CBS129424:0.0,Phytophthora_fluvialis_MUCC772:0.0):22.0):3.0,(((Phytophthora_thermophila_VHS7474:0.0,Phytophthora_thermophila_VHS13530:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC781_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37734_T:0.0):1.0,Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC780_T:0.0,Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo__MUCC783_T:0.0,Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo_MUCC784_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37731_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37732_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37733_T:0.0):0.0,(Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC782_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_VHS5185_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_VHS22715_T:0.0):2.0):7.0):2.0,(Phytophthora_litoralis_VHS20763:0.0,Phytophthora_litoralis_VHS17085:0.0):3.0):3.0,((Phytophthora_pgchlamydo_DDS3753:0.0,Phytophthora_pgchlamydo_VHS6595:0.0):3.0,(Phytophthora_pgchlamydo_SLPA121:0.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_MUCC774_PG:0.0,Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC777_PG:0.0,Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC778_PG:0.0,Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC779_PG:0.0,(Phytophthora_thermophila_X_Phytophthora__taxon_PgChlamydo_MUCC783_PG:0.0,Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo__MUCC784_PG:0.0):2.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37727_PG:0.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37729_PG:0.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37730_PG:0.0):0.0):3.0):3.0,(Phytophthora_gonapodyides_MUCC776:0.0,Phytophthora_gonapodyides_MUCC761:0.0):26.0):7.0,(Phytophthora_megasperma_VHS17183:0.0,Phytophthora_megasperma_DDS3432:0.0):10.0):13.0,Phytophthora_fragariae_PFF309_DQ092858:18.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr55221] END; BEGIN TREES; TITLE GPA1_MP; LINK TAXA = TaxaForAnalysisStep9652; TREE GPA1_MP_3 = [&R] (((((((Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC777_A:3.0,(Phytophthora_fluvialis_CBS129424:0.0,Phytophthora_fluvialis_MUCC772:0.0):22.0):3.0,(((Phytophthora_thermophila_VHS7474:0.0,Phytophthora_thermophila_VHS13530:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC781_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37734_T:0.0):1.0,Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC780_T:0.0,Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo__MUCC783_T:0.0,Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo_MUCC784_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37731_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37732_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37733_T:0.0):0.0,(Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC782_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_VHS5185_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_VHS22715_T:0.0):2.0):7.0):2.0,(Phytophthora_litoralis_VHS20763:0.0,Phytophthora_litoralis_VHS17085:0.0):3.0):3.0,((Phytophthora_pgchlamydo_DDS3753:0.0,Phytophthora_pgchlamydo_VHS6595:0.0):3.0,Phytophthora_pgchlamydo_SLPA121:0.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_MUCC774_PG:0.0,Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC777_PG:0.0,Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC778_PG:0.0,Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC779_PG:0.0,(Phytophthora_thermophila_X_Phytophthora__taxon_PgChlamydo_MUCC783_PG:0.0,Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo__MUCC784_PG:0.0):2.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37727_PG:0.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37729_PG:0.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37730_PG:0.0):3.0):3.0,(Phytophthora_gonapodyides_MUCC776:0.0,Phytophthora_gonapodyides_MUCC761:0.0):26.0):7.0,(Phytophthora_megasperma_VHS17183:0.0,Phytophthora_megasperma_DDS3432:0.0):10.0):13.0,Phytophthora_fragariae_PFF309_DQ092858:18.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr55220] END; BEGIN TREES; TITLE GPA1_MP; LINK TAXA = TaxaForAnalysisStep9652; TREE GPA1_MP_1 = [&R] (((((((Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC777_A:3.0,(Phytophthora_fluvialis_CBS129424:0.0,Phytophthora_fluvialis_MUCC772:0.0):22.0):3.0,((Phytophthora_thermophila_VHS7474:0.0,Phytophthora_thermophila_VHS13530:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC781_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37734_T:0.0):1.0,Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC780_T:0.0,(Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC782_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_VHS5185_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_VHS22715_T:0.0):2.0,Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo__MUCC783_T:0.0,Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo_MUCC784_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37731_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37732_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37733_T:0.0):7.0):2.0,(Phytophthora_litoralis_VHS20763:0.0,Phytophthora_litoralis_VHS17085:0.0):3.0):3.0,((Phytophthora_pgchlamydo_DDS3753:0.0,Phytophthora_pgchlamydo_VHS6595:0.0):3.0,Phytophthora_pgchlamydo_SLPA121:0.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_MUCC774_PG:0.0,Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC777_PG:0.0,Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC778_PG:0.0,Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC779_PG:0.0,(Phytophthora_thermophila_X_Phytophthora__taxon_PgChlamydo_MUCC783_PG:0.0,Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo__MUCC784_PG:0.0):2.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37727_PG:0.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37729_PG:0.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37730_PG:0.0):3.0):3.0,(Phytophthora_gonapodyides_MUCC776:0.0,Phytophthora_gonapodyides_MUCC761:0.0):26.0):7.0,(Phytophthora_megasperma_VHS17183:0.0,Phytophthora_megasperma_DDS3432:0.0):10.0):13.0,Phytophthora_fragariae_PFF309_DQ092858:18.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr55218] END; BEGIN TREES; TITLE GPA1_MP; LINK TAXA = TaxaForAnalysisStep9652; TREE GPA1_MP_2 = [&R] (((((((Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC777_A:3.0,(Phytophthora_fluvialis_CBS129424:0.0,Phytophthora_fluvialis_MUCC772:0.0):22.0):3.0,((Phytophthora_thermophila_VHS7474:0.0,Phytophthora_thermophila_VHS13530:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC781_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37734_T:0.0):1.0,Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC780_T:0.0,(Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC782_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_VHS5185_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_VHS22715_T:0.0):2.0,Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo__MUCC783_T:0.0,Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo_MUCC784_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37731_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37732_T:0.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37733_T:0.0):7.0):2.0,(Phytophthora_litoralis_VHS20763:0.0,Phytophthora_litoralis_VHS17085:0.0):3.0):3.0,((Phytophthora_pgchlamydo_DDS3753:0.0,Phytophthora_pgchlamydo_VHS6595:0.0):3.0,(Phytophthora_pgchlamydo_SLPA121:0.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_MUCC774_PG:0.0,Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC777_PG:0.0,Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC778_PG:0.0,Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC779_PG:0.0,(Phytophthora_thermophila_X_Phytophthora__taxon_PgChlamydo_MUCC783_PG:0.0,Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo__MUCC784_PG:0.0):2.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37727_PG:0.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37729_PG:0.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37730_PG:0.0):0.0):3.0):3.0,(Phytophthora_gonapodyides_MUCC776:0.0,Phytophthora_gonapodyides_MUCC761:0.0):26.0):7.0,(Phytophthora_megasperma_VHS17183:0.0,Phytophthora_megasperma_DDS3432:0.0):10.0):13.0,Phytophthora_fragariae_PFF309_DQ092858:18.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr55219] END;