M2341
|
Sarcostemma trnL-F spacers |
Legacy TreeBASE Matrix ID = M912 |
Nucleic Acid |
28 |
2053 |
|
|
|
M56013
|
Metastelmatinae COS NUC Matrix |
|
Nucleic Acid |
27 |
3356 |
|
|
|
M1698
|
Table 3 |
Legacy TreeBASE Matrix ID = M293 |
Allozyme |
10 |
13 |
|
|
|
M42115
|
Neotropical sages Combined ITS and plastid matrix |
Combined matrix used in the phylogeny of Calosphace in figures 1-4 |
Nucleic Acid |
265 |
2212 |
|
|
|
M1655
|
Table 1 |
Legacy TreeBASE Matrix ID = M28c11x5x95c18c17c29 |
Morphological |
16 |
29 |
|
|
|
M1529
|
Indel Matrix |
Legacy TreeBASE Matrix ID = M2378 |
Unspecified |
59 |
134 |
|
|
|
M57680
|
Orostachys trnH-psbA, trnQ-rps16, rpl32-trnL |
|
Nucleic Acid |
84 |
2294 |
|
|
|
M32002
|
Sparganium ptDNA RAxML |
Sparganium_ptDNA_RAxML |
Nucleic Acid |
14 |
5974 |
|
|
|
M56336
|
Osmundaceae L245 |
L245 |
Nucleic Acid |
14 |
303 |
|
|
|
M365
|
Stapeliad ITS |
Legacy TreeBASE Matrix ID = M1205 |
Nucleic Acid |
80 |
719 |
|
|
|
M56342
|
Osmundaceae L519 |
L519 |
Nucleic Acid |
23 |
712 |
|
|
|
M24608
|
Myos trnQ atpH 73 15Oct2014 |
Myosotis reduced chloroplast DNA data set 73 individuals |
Nucleic Acid |
73 |
1831 |
|
|
|
M48080
|
Doronicum nuclear A25 locus |
|
Nucleic Acid |
44 |
425 |
|
|
|
M45618
|
Orleanesia Morphology |
|
Morphological |
21 |
22 |
|
|
|
M30264
|
Veronica subsect. Canae ITS |
ITS |
Nucleic Acid |
34 |
722 |
|
|
|
M56333
|
Osmundaceae L110 |
L110 |
Nucleic Acid |
14 |
553 |
|
|
|
M376
|
Table 4 |
Legacy TreeBASE Matrix ID = M121c2x3x96c17c36c22 |
Restriction Site |
10 |
141 |
|
|
|
M55938
|
Fomitiporella s.l. ITS-LSU |
|
Nucleic Acid |
71 |
1331 |
|
|
|
M245
|
Table 3 |
Legacy TreeBASE Matrix ID = M106c2x3x96c13c42c44 |
Restriction Site |
11 |
29 |
|
|
|
M34694
|
Ranunculaceae CYC2 |
|
Nucleic Acid |
31 |
348 |
|
|
|
M53154
|
Liparis ITS-matK concatenated |
|
Nucleic Acid |
62 |
2191 |
|
|
|
M2208
|
Fig. 2 |
Legacy TreeBASE Matrix ID = M58c11x6x95c10c13c27 |
Nucleic Acid |
19 |
718 |
|
|
|
M37643
|
Halfordia cpDNA matrix |
combined rbcL_trnL-trnF dataset |
Nucleic Acid |
41 |
2486 |
|
|
|
M24221
|
Lucilia group (Asteraceae, Gnaphalieae): ETS 54x507 |
|
Nucleic Acid |
58 |
507 |
|
|
|
M56337
|
Osmundaceae L258 |
L258 |
Nucleic Acid |
17 |
353 |
|
|
|
M46393
|
Zieria nrDNA and cpDNA |
Concatenated nrDNA and cpDNA markers |
Nucleic Acid |
20 |
6702 |
|
|
|
M56331
|
Osmundaceae L58 |
L58 |
Nucleic Acid |
12 |
198 |
|
|
|
M48087
|
Doronicum nuclear A39 locus |
|
Nucleic Acid |
39 |
554 |
|
|
|
M46898
|
Otachyriinae |
|
Nucleic Acid |
68 |
2068 |
|
|
|
M2233
|
trnL to trnF |
Legacy TreeBASE Matrix ID = M614 |
Nucleic Acid |
63 |
1272 |
|
|
|
M42116
|
Neotropical sages Calosphace NrITS matrix |
NrITS matrix used in the phylogeny of Calosphace |
Nucleic Acid |
265 |
713 |
|
|
|
M359
|
Table 1 |
Legacy TreeBASE Matrix ID = M119c2x3x96c17c29c52 |
Morphological |
6 |
15 |
|
|
|
M49160
|
Scandiceae rpoC1 trimmed |
plastid rpoC1 intron (subset) |
Nucleic Acid |
86 |
1009 |
|
|
|
M3063
|
rps4 |
Legacy TreeBASE Matrix ID = M3683 |
Nucleic Acid |
50 |
552 |
|
|
|
M56343
|
Osmundaceae L525 |
L525 |
Nucleic Acid |
16 |
606 |
|
|
|
M1252
|
5 Molecular Markers |
Legacy TreeBASE Matrix ID = M2750 |
Nucleic Acid |
42 |
9237 |
|
|
|
M48084
|
Doronicum combined (nuclear A25, nuclear A39, nuclear ITS, plastid trnL-trnF) |
|
Nucleic Acid |
75 |
2611 |
|
|
|
M49988
|
Callianthemum trnL-trnF |
|
Nucleic Acid |
30 |
957 |
|
|
|
M24720
|
Myos trnQ atpH 102 29Oct2014 |
Myosotis chloroplast DNA data set 102 individuals |
Nucleic Acid |
102 |
2517 |
|
|
|
M49158
|
Scandiceae ITS trimmed |
nuclear Internal Transcribed Spacer (subset) |
Nucleic Acid |
86 |
600 |
|
|
|
M56341
|
Osmundaceae L459 |
L459 |
Nucleic Acid |
8 |
507 |
|
|
|
M35546
|
Dof transcription factor gene family of chickpea |
|
Amino Acid |
37 |
555 |
|
|
|
M82
|
ITS |
Legacy TreeBASE Matrix ID = M1010 |
Nucleic Acid |
40 |
632 |
|
|
|
M3130
|
Ferula-Scandiceae |
Legacy TreeBASE Matrix ID = M3774 |
Nucleic Acid |
76 |
636 |
|
|
|
M34758
|
Correa ITS Sequence Matrix |
ITS alignment |
Nucleic Acid |
79 |
619 |
|
|
|
M6148
|
Elymus 7 genes |
|
Nucleic Acid |
44 |
7930 |
|
|
|
M56334
|
Osmundaceae L153 |
L153 |
Nucleic Acid |
15 |
1185 |
|
|
|
M50949
|
Campanula cremnophila cpITS |
|
Nucleic Acid |
51 |
1744 |
|
|
|
M2637
|
Table 2 |
Legacy TreeBASE Matrix ID = M70c1x28x96c17c17c21 |
Morphological |
11 |
24 |
|
|
|
M1253
|
Appendix 1 |
Legacy TreeBASE Matrix ID = M2751 |
Nucleic Acid |
42 |
45 |
|
|
|
M816
|
Table 4 |
Legacy TreeBASE Matrix ID = M96c2x3x96c12c07c53 |
Morphological |
40 |
56 |
|
|
|
M50086
|
Ammopiptanthus |
|
Nucleic Acid |
10 |
51221 |
|
|
|
M34693
|
Ranunculaceae matK |
|
Nucleic Acid |
60 |
2257 |
|
|
|
M22509
|
Anemone section Begoniifolia (Ranunculaceae) |
|
Nucleic Acid |
76 |
1791 |
|
|
|
M554
|
Appendix 2 |
Legacy TreeBASE Matrix ID = M143c2x4x96c17c15c38 |
Morphological |
19 |
46 |
|
|
|
M49990
|
Callianthemum matK |
|
Nucleic Acid |
30 |
1158 |
|
|
|
M237
|
Asteraceae ITS sequences |
Legacy TreeBASE Matrix ID = M1061 |
Nucleic Acid |
95 |
765 |
|
|
|
M24635
|
Phaseolus Table 3 |
|
|
19 |
170 |
|
|
|
M24223
|
Lucilia group (Asteraceae, Gnaphalieae): rpl32 39x830 |
|
Nucleic Acid |
58 |
830 |
|
|
|
M499
|
Table 3 |
Legacy TreeBASE Matrix ID = M137c2x4x96c14c40c43 |
Restriction Site |
12 |
50 |
|
|
|
M23142
|
Anemoclema |
|
Nucleic Acid |
59 |
1691 |
|
|
|
M32003
|
Sparganium PhyC RAxML |
Sparganium_PhyC_RAxML |
Nucleic Acid |
19 |
874 |
|
|
|
M32012
|
Sparganium ptDNA MP |
Sparganium_ptDNA_MP |
Nucleic Acid |
14 |
5974 |
|
|
|
M56344
|
Osmundaceae L568 |
L568 |
Nucleic Acid |
20 |
810 |
|
|
|
M46430
|
Zieria AFLP |
Concatenated data from four AFLP primer combinations |
Restriction Site |
79 |
748 |
|
|
|
M34691
|
Ranunculaceae CYC1 |
|
Nucleic Acid |
39 |
384 |
|
|
|
M56340
|
Osmundaceae L418 |
L418 |
Nucleic Acid |
12 |
559 |
|
|
|
M34695
|
Ranunculaceae nad4-I1 |
|
Nucleic Acid |
54 |
1913 |
|
|
|
M541
|
Morphological |
Legacy TreeBASE Matrix ID = M1424 |
Morphological |
37 |
30 |
|
|
|
M53349
|
Liparis ITS matK concatenated |
|
Nucleic Acid |
62 |
2191 |
|
|
|
M49162
|
Scandiceae Categorical |
qualitative traits of fruits |
Morphological |
86 |
12 |
|
|
|
M85
|
ETS and ITS |
Legacy TreeBASE Matrix ID = M1030 |
Nucleic Acid |
77 |
1099 |
|
|
|
M15282
|
NWCypress Binary Characters |
|
Nucleic Acid |
24 |
230 |
|
|
|
M56015
|
Metastelmatinae ETS ITS Matrix |
|
Nucleic Acid |
27 |
1388 |
|
|
|
M4828
|
Brassicaceae ITS |
Legacy TreeBASE Matrix ID = M5130 |
Nucleic Acid |
186 |
773 |
|
|
|
M37642
|
Halfordia nrDNA matrix |
combined ITS+ETS dataset |
Nucleic Acid |
41 |
1380 |
|
|
|
M25587
|
Phylogeography of Rosa soulieana |
Alignment including 3 outgroups |
Nucleic Acid |
12 |
1712 |
|
|
|
M49155
|
Scandiceae rpoB |
plastid rpoB-trnC intergenic spacer |
Nucleic Acid |
86 |
1391 |
|
|
|
M56016
|
Metastelmatinae Morfo |
|
Morphological |
29 |
20 |
|
|
|
M49156
|
Scandiceae rpoC1 |
plastid rpoC1 intron |
Nucleic Acid |
86 |
1162 |
|
|
|
M54902
|
Marasmius sect Marasmius ITS |
|
Nucleic Acid |
127 |
444 |
|
|
|
M39213
|
Styracaceae complete plastome: 66 shared protein-coding genes of 26 species |
|
Nucleic Acid |
26 |
54371 |
|
|
|
M3062
|
rbcL |
Legacy TreeBASE Matrix ID = M3682 |
Nucleic Acid |
50 |
1293 |
|
|
|
M540
|
DNA + Indels |
Legacy TreeBASE Matrix ID = M1423 |
Nucleic Acid |
37 |
6661 |
|
|
|
M4327
|
Bieb 64 taxa atpB |
Legacy TreeBASE Matrix ID = M4426 |
Nucleic Acid |
64 |
1491 |
|
|
|
M743
|
Table 1 |
Legacy TreeBASE Matrix ID = M165c2x14x97c16c15c05 |
Nucleic Acid |
34 |
728 |
|
|
|
M56330
|
Osmundaceae trnLF |
trnLF |
Nucleic Acid |
16 |
413 |
|
|
|
M31883
|
isolepis rbclrps16trnl raxml |
isolepis_rbclrps16trnl_raxml |
Nucleic Acid |
45 |
2855 |
|
|
|
M34692
|
Ranunculaceae CYC1-CYC2-ITS1 |
|
Nucleic Acid |
55 |
1213 |
|
|
|
M32022
|
Sparganium phyC Bayes |
Sparganium_phyC_Bayes |
Nucleic Acid |
19 |
874 |
|
|
|
M41467
|
Encelia farinosa ITS haplotype alignment |
ITS haplotype sequences from Encelia farinosa |
Nucleic Acid |
22 |
704 |
|
|
|
M24520
|
Rochefortia align 15 x 2014 |
Concatenated nuclear and chloroplast sequences of Rochefortia and outgroup taxa |
Nucleic Acid |
45 |
3310 |
|
|
|
M3064
|
nad5-nad4 spacer |
Legacy TreeBASE Matrix ID = M3684 |
Nucleic Acid |
50 |
1222 |
|
|
|
M49992
|
Callianthemum ITS |
|
Nucleic Acid |
30 |
651 |
|
|
|
M56014
|
Metastelmatinae COS Matrix |
|
Nucleic Acid |
21 |
1968 |
|
|
|
M640
|
Table x |
Legacy TreeBASE Matrix ID = M153c2x16x96c14c29c29 |
Morphological |
30 |
45 |
|
|
|
M2338
|
Table 5 |
Legacy TreeBASE Matrix ID = M90c2x2x96c15c53c02 |
Restriction Site |
6 |
104 |
|
|
|
M31925
|
Isolepis rbcL rps16 trnL MP |
Isolepis_rbcLrps16trnL_MP |
Nucleic Acid |
45 |
2883 |
|
|
|
M3022
|
4 genes combined |
Legacy TreeBASE Matrix ID = M3623 |
Nucleic Acid |
46 |
4376 |
|
|
|
M31926
|
Isolepis ITS MP |
Isolepis_ITS_MP |
Nucleic Acid |
45 |
583 |
|
|
|
M56338
|
Osmundaceae L261 |
L261 |
Nucleic Acid |
14 |
322 |
|
|
|
M56017
|
Metastelmatinae Nuc Matrix |
|
Nucleic Acid |
29 |
3356 |
|
|
|
M31886
|
Isolepis ITS MrBayes |
Isolepis_its_MrBayes |
Nucleic Acid |
45 |
583 |
|
|
|
M32013
|
Sparganium PhyC MP |
Sparganium_PhyC_MP |
Nucleic Acid |
19 |
874 |
|
|
|
M56325
|
Osmundaceae atpA |
atpA |
Nucleic Acid |
21 |
1675 |
|
|
|
M32021
|
Sparganium ptDNA Bayes |
Sparganium_ptDNA_Bayes |
Nucleic Acid |
14 |
5974 |
|
|
|
M49164
|
Scandiceae Continuous PHYLOPARS |
quantitative traits of fruits (no missing data) |
Morphological |
86 |
17 |
|
|
|
M34689
|
Ranunculaceae ndhF |
|
Nucleic Acid |
57 |
2271 |
|
|
|
M18696
|
Elaphoglossum atpB-rbcL, rps4-trnS and trnL-F |
Concatenated Matrix of atpB-rbcL, rps4-trnS and trnL-F |
Nucleic Acid |
154 |
1580 |
|
|
|
M56329
|
Osmundaceae trnGR |
trnGR |
Nucleic Acid |
17 |
920 |
|
|
|
M547
|
Absent |
Legacy TreeBASE Matrix ID = M142c2x4x96c17c14c58 |
Morphological |
50 |
1 |
|
|
|
M55937
|
Fomitiporella s.l. ITS1-5.8S-ITS2 |
|
Nucleic Acid |
73 |
640 |
|
|
|
M15281
|
NWCypress Matrix DNA |
|
Nucleic Acid |
24 |
14799 |
|
|
|
M452
|
Table 4 |
Legacy TreeBASE Matrix ID = M131c2x4x96c13c53c36 |
Morphological |
25 |
26 |
|
|
|
M30262
|
Veronica subsect. Canae combi |
combi |
Nucleic Acid |
41 |
2536 |
|
|
|
M51982
|
Hylocereeae Anatomy |
|
Morphological |
75 |
36 |
|
|
|
M24229
|
Kiewia Combined ITS matK |
|
|
13 |
2547 |
|
|
|
M1530
|
Aristolochiaceae trnLF |
Legacy TreeBASE Matrix ID = M2379 |
Nucleic Acid |
59 |
1724 |
|
|
|
M48088
|
Doronicum nuclear ITS |
|
Nucleic Acid |
88 |
743 |
|
|
|
M334
|
Table 2 |
Legacy TreeBASE Matrix ID = M116c2x3x96c17c12c57 |
Restriction Site |
45 |
91 |
|
|
|
M51983
|
Hylocereeae MP |
|
Nucleic Acid |
75 |
4868 |
|
|
|
M188
|
combined ndhF and ITS |
Legacy TreeBASE Matrix ID = M1012 |
Nucleic Acid |
40 |
2829 |
|
|
|
M45619
|
Orleanesia nrITS plastid matK |
|
Nucleic Acid |
21 |
1576 |
|
|
|
M48083
|
Doronicum plastid trnL-trnF |
|
Nucleic Acid |
75 |
894 |
|
|
|
M56335
|
Osmundaceae L169 |
L169 |
Nucleic Acid |
16 |
692 |
|
|
|
M24719
|
Myos ITS ETS 161 29Oct2014 |
Myosotis nuclear DNA data set 161 individuals |
Nucleic Acid |
161 |
960 |
|
|
|
M41445
|
Heliantheae and Encelia farinosa psbA-trnH alignment |
psbA-trnH sequences for BEAST divergence time analysis |
Nucleic Acid |
157 |
553 |
|
|
|
M59083
|
Neonauclea ETS ITS rbcL trnT-F |
Combined ETS, ITS, rbcL, and trnT-F |
Nucleic Acid |
79 |
4364 |
|
|
|
M24222
|
Lucilia group (Asteraceae, Gnaphalieae): trnL 43x944 |
|
Nucleic Acid |
58 |
944 |
|
|
|
M30263
|
Veronica subsect. Canae cp |
cp |
Nucleic Acid |
40 |
1814 |
|
|
|
M1452
|
Sesuvioideae Morph-ITS |
Legacy TreeBASE Matrix ID = M2262 |
Combination |
27 |
676 |
|
|
|
M56345
|
Osmundaceae GapCp |
GapCp |
Nucleic Acid |
22 |
1688 |
|
|
|
M41473
|
Encelia farinosa D22 haplotype alignment |
D22 haplotype sequences from Encelia farinosa |
Nucleic Acid |
27 |
306 |
|
|
|
M49154
|
Scandiceae ITS |
nuclear Internal Transcribed Spacer |
Nucleic Acid |
86 |
656 |
|
|
|
M3131
|
Ferula-Apioideae |
Legacy TreeBASE Matrix ID = M3775 |
Nucleic Acid |
49 |
643 |
|
|
|
M34690
|
Ranunculaceae matK-ndhF-rbcL-trnL |
|
Nucleic Acid |
60 |
7015 |
|
|
|
M101
|
Table 6 |
Legacy TreeBASE Matrix ID = M122c2x3x96c17c40c50 |
Morphological |
8 |
66 |
|
|
|
M366
|
Stapeliad Taberlet |
Legacy TreeBASE Matrix ID = M1206 |
Nucleic Acid |
80 |
1957 |
|
|
|
M56332
|
Osmundaceae L95 |
L95 |
Nucleic Acid |
25 |
887 |
|
|
|
M24611
|
Myos ITS ETS 75 21Oct2014 |
Myosotis reduced nuclear DNA data set 75 individuals |
Restriction Site |
75 |
914 |
|
|
|
M31884
|
isolepis ITS raxml |
isolepis_its_raxml |
Nucleic Acid |
45 |
583 |
|
|
|
M56339
|
Osmundaceae L267 |
L267 |
Nucleic Acid |
18 |
1272 |
|
|
|
M3505
|
Table 2 |
Legacy TreeBASE Matrix ID = M283 |
Restriction Site |
33 |
50 |
|
|
|
M56328
|
Osmundaceae rps4trnS |
rps4trnS |
Nucleic Acid |
13 |
931 |
|
|
|
M41472
|
Encelia farinosa psbA-trnH haplotype alignment |
psbA-trnH haplotype sequences from Encelia farinosa |
Nucleic Acid |
10 |
456 |
|
|
|
M56327
|
Osmundaceae rbcLaccD |
rbcLaccD |
Nucleic Acid |
26 |
1558 |
|
|
|
M49157
|
Scandiceae rps16 |
plastid rps16 intron |
Nucleic Acid |
86 |
1073 |
|
|
|
M3632
|
Table 1 |
Legacy TreeBASE Matrix ID = M68c1x28x96c16c56c39 |
Morphological |
31 |
25 |
|
|
|
M42118
|
Neotropical sages Plastid matrix |
Combined plastid matrix used in the phylogeny of Calosphace |
Nucleic Acid |
265 |
1499 |
|
|
|
M24220
|
Lucilia group (Asteraceae, Gnaphalieae): ITS 45x636 |
|
Nucleic Acid |
58 |
636 |
|
|
|
M187
|
ndhF |
Legacy TreeBASE Matrix ID = M1011 |
Nucleic Acid |
40 |
2119 |
|
|
|
M1451
|
Sesuvioideae ITS |
Legacy TreeBASE Matrix ID = M2261 |
Nucleic Acid |
29 |
653 |
|
|
|
M24610
|
Myos AFLP 77 2057 21Oct2014 |
Myosotis AFLP data set 77 individuals |
Nucleic Acid |
77 |
2057 |
|
|
|
M3931
|
Table 3 |
Legacy TreeBASE Matrix ID = M77c1x29x96c16c12c23 |
Morphological |
6 |
7 |
|
|
|
M3060
|
nad2 |
Legacy TreeBASE Matrix ID = M3680 |
Nucleic Acid |
50 |
2358 |
|
|
|
M4246
|
Bieb 114 taxa rbcL |
Legacy TreeBASE Matrix ID = M4425 |
Nucleic Acid |
114 |
1387 |
|
|
|
M24224
|
Lucilia group (Asteraceae, Gnaphalieae): Morphological |
|
Morphological |
58 |
36 |
|
|
|
M298
|
Table 2 |
Legacy TreeBASE Matrix ID = M112c2x3x96c16c50c04 |
Morphological |
9 |
16 |
|
|
|
M56326
|
Osmundaceae rbcL |
rbcL |
Nucleic Acid |
21 |
1227 |
|
|
|
M49159
|
Scandiceae rpoB trimmed |
plastid rpoB-trnC intergenic spacer (subset) |
Nucleic Acid |
86 |
1253 |
|
|
|
M364
|
Stapeliad Taberlet-ITS |
Legacy TreeBASE Matrix ID = M1204 |
Nucleic Acid |
80 |
2675 |
|
|
|
M31885
|
Isolepis rbcL rps16 trnL MrBayes |
Isolepis_rbcLrps16trnL_MrBayes |
Nucleic Acid |
45 |
2855 |
|
|
|
M49163
|
Scandiceae Continuous |
quantitative traits of fruits |
Morphological |
86 |
17 |
|
|
|
M1846
|
Table 1 |
Legacy TreeBASE Matrix ID = M31c11x5x95c18c36c37 |
Morphological |
13 |
63 |
|
|
|
M49991
|
Callianthemum trnV-ndhC alignment |
|
Nucleic Acid |
30 |
1128 |
|
|
|
M49161
|
Scandiceae rps16 trimmed |
plastid rps16 intron (subset) |
Nucleic Acid |
86 |
843 |
|
|
|
M49989
|
Callianthemum rpL32-trnL |
|
Nucleic Acid |
30 |
813 |
|
|
|
M3061
|
nad5 |
Legacy TreeBASE Matrix ID = M3681 |
Nucleic Acid |
50 |
2126 |
|
|
|
M34770
|
Correa cpDNA Sequence matrix |
cpDNA alignment |
Nucleic Acid |
74 |
1246 |
|
|
|
M3626
|
Table 1 |
Legacy TreeBASE Matrix ID = M67c1x28x96c16c46c43 |
Morphological |
40 |
30 |
|
|
|