|
M641
|
Lysimachia trnLF & ITS |
Legacy TreeBASE Matrix ID = M1542 |
Nucleic Acid |
58 |
1719 |
|
|
|
|
M445
|
Fig2a, betatubulin |
Legacy TreeBASE Matrix ID = M1308 |
Nucleic Acid |
30 |
790 |
|
|
|
|
M3252
|
matrix1 c11 |
Legacy TreeBASE Matrix ID = M3917 |
Nucleic Acid |
126 |
5439 |
|
|
|
|
M781
|
28S |
Legacy TreeBASE Matrix ID = M1711 |
Nucleic Acid |
37 |
771 |
|
|
|
|
M3163
|
Nicrophorus investigator group COI COII |
Legacy TreeBASE Matrix ID = M3825 |
Nucleic Acid |
50 |
2129 |
|
|
|
|
M46200
|
Galeandra orchids |
The Matrix of 31 taxa and 6014 nucleotides for five plastid (ycf1, psbA-trnH, rpoB-trnC and trnS-trnG), and two three nuclear (xdh, ITS and ETS) markers |
Nucleic Acid |
31 |
6014 |
|
|
|
|
M4863
|
Figure 3A nuclear |
Legacy TreeBASE Matrix ID = M5086 |
Nucleic Acid |
16 |
1950 |
|
|
|
|
M35423
|
Xylariaceae Beta-tubulin intron4 recoded |
Xylaraiceae |
Unspecified |
367 |
166 |
|
|
|
|
M4395
|
18S rDNA |
Legacy TreeBASE Matrix ID = M4845 |
Nucleic Acid |
130 |
1917 |
|
|
|
|
M33179
|
Vincetoxicum ITS1 |
|
Nucleic Acid |
140 |
334 |
|
|
|
|
M3487
|
Combined molecular and morphological data |
Legacy TreeBASE Matrix ID = M2789 |
Combination |
47 |
6011 |
|
|
|
|
M35433
|
Xylariaceae beta-tubulin intron2 recoded |
Xylariomycetidae |
Unspecified |
520 |
165 |
|
|
|
|
M14303
|
Locus_47.43: Gene_EF5 |
Z-linked gene |
Nucleic Acid |
72 |
480 |
|
|
|
|
M3592
|
Anaxyrus boreas - Restriction Sites |
Legacy TreeBASE Matrix ID = M4159 |
Restriction Site |
31 |
60 |
|
|
|
|
M941
|
ImpDEF1/ImpDEF2 |
Legacy TreeBASE Matrix ID = M3031 |
Nucleic Acid |
59 |
2389 |
|
|
|
|
M933
|
18S rRNA |
Legacy TreeBASE Matrix ID = M3024 |
Nucleic Acid |
87 |
2353 |
|
|
|
|
M3382
|
EF1 |
Legacy TreeBASE Matrix ID = M4193 |
Nucleic Acid |
12 |
345 |
|
|
|
|
M2216
|
18S |
Legacy TreeBASE Matrix ID = M597 |
Nucleic Acid |
23 |
1764 |
|
|
|
|
M20872
|
Araceae Alignment plastid protein CDS |
|
Nucleic Acid |
43 |
61716 |
|
|
|
|
M32307
|
Althenia matKndhFrbcLrpoBrpoC1_MP |
matKndhFrbcLrpoBrpoC1_MP |
Nucleic Acid |
14 |
3776 |
|
|
|
|
M4739
|
combined |
Legacy TreeBASE Matrix ID = M4926 |
Nucleic Acid |
26 |
1141 |
|
|
|
|
M1930
|
28SACOI |
Legacy TreeBASE Matrix ID = M3288 |
Nucleic Acid |
58 |
1404 |
|
|
|
|
M1378
|
ND2-WANCY + c-myc |
Legacy TreeBASE Matrix ID = M2177 |
Nucleic Acid |
55 |
2928 |
|
|
|
|
M15954
|
Concatenated dataset |
concatenated dataset of cox1, 16S, tRNA-Leu, nadh and 12S mtDNA gene fragments and 28S nuDNA |
Nucleic Acid |
107 |
2748 |
|
|
|
|
M4170
|
12S and 16S rDNA |
Legacy TreeBASE Matrix ID = M3294 |
Nucleic Acid |
258 |
2565 |
|
|
|
|
M5101
|
16S rDNA |
mtDNA |
Nucleic Acid |
103 |
535 |
|
|
|
|
M35435
|
Xylariaceae beta-tubulin intron5 recoded |
Xylariomycetidae |
Unspecified |
520 |
199 |
|
|
|
|
M3143
|
RP2 ML unique haplotypes |
Legacy TreeBASE Matrix ID = M3789 |
Nucleic Acid |
27 |
602 |
|
|
|
|
M52719
|
21 Crassulaceae species |
|
Nucleic Acid |
21 |
160376 |
|
|
|
|
M2297
|
Louse EF1alpha |
Legacy TreeBASE Matrix ID = M863 |
Nucleic Acid |
111 |
345 |
|
|
|
|
M44368
|
Bottlenose Dolphins Partial Mitogenomes |
|
Nucleic Acid |
100 |
4716 |
|
|
|
|
M705
|
Neillia_ITSsm |
Legacy TreeBASE Matrix ID = M1613 |
Nucleic Acid |
13 |
608 |
|
|
|
|
M1939
|
28S |
Legacy TreeBASE Matrix ID = M3297 |
Unspecified |
18 |
883 |
|
|
|
|
M10833
|
Delphinieae Jabbour & Renner trnLF ITS |
|
Nucleic Acid |
191 |
2088 |
|
|
|
|
M788
|
COI 0-fold degenerate |
Legacy TreeBASE Matrix ID = M1718 |
Nucleic Acid |
37 |
377 |
|
|
|
|
M446
|
Fig.2d, SSU rDNA intron |
Legacy TreeBASE Matrix ID = M1309 |
Nucleic Acid |
28 |
278 |
|
|
|
|
M2267
|
ITS1 5.8s ITS2 with P4-4 |
Legacy TreeBASE Matrix ID = M760 |
Nucleic Acid |
20 |
635 |
|
|
|
|
M643
|
Lysimachia trnLF |
Legacy TreeBASE Matrix ID = M1544 |
Nucleic Acid |
71 |
1058 |
|
|
|
|
M14308
|
Locus_Aldob: Gene_Aldob |
Z-linked gene |
Nucleic Acid |
72 |
588 |
|
|
|
|
M44235
|
Ferns-part5 |
|
Nucleic Acid |
136 |
187897 |
|
|
|
|
M12776
|
NADH dehydrogenase subunit 2 |
|
Nucleic Acid |
50 |
1416 |
|
|
|
|
M584
|
ITS, small |
Legacy TreeBASE Matrix ID = M1484 |
Nucleic Acid |
119 |
646 |
|
|
|
|
M20140
|
PF16 DNA exc3 |
|
Nucleic Acid |
97 |
1209 |
|
|
|
|
M4751
|
mtDNA sequence |
Legacy TreeBASE Matrix ID = M5067 |
Nucleic Acid |
67 |
1806 |
|
|
|
|
M40350
|
Sticta 4-loci (ITS, nuLSU, mtSSU, RPB1) |
Combined 4-loci matrix |
Nucleic Acid |
97 |
4129 |
|
|
|
|
M940
|
ImpDEF1/ImpDEF2/atpB-rbcL |
Legacy TreeBASE Matrix ID = M3030 |
Nucleic Acid |
59 |
3351 |
|
|
|
|
M35429
|
Xylariaceae 5.8S rDNA alignment |
Xylariomycetidae |
Nucleic Acid |
520 |
158 |
|
|
|
|
M45773
|
Australasian orchids Nuclear alignment (ITS) |
|
Nucleic Acid |
128 |
773 |
|
|
|
|
M3381
|
18S |
Legacy TreeBASE Matrix ID = M4192 |
Nucleic Acid |
12 |
3113 |
|
|
|
|
M4543
|
cpDNA |
Legacy TreeBASE Matrix ID = M4435 |
Combination |
131 |
3188 |
|
|
|
|
M4396
|
Figure 2 |
Legacy TreeBASE Matrix ID = M4666 |
Nucleic Acid |
88 |
1206 |
|
|
|
|
M33174
|
Vincetoxicum trnG |
|
Nucleic Acid |
140 |
178 |
|
|
|
|
M25012
|
Dictyostelid Group A&B |
|
Nucleic Acid |
68 |
2572 |
|
|
|
|
M4796
|
linn all nozabelia |
Legacy TreeBASE Matrix ID = M5013 |
Nucleic Acid |
44 |
4703 |
|
|
|
|
M1337
|
combined CHD introns |
Legacy TreeBASE Matrix ID = M2140 |
Nucleic Acid |
25 |
776 |
|
|
|
|
M4955
|
Triturus karelinii ND24 |
Mitochondrial ND2 and ND4 protein coding genes |
Nucleic Acid |
74 |
1699 |
|
|
|
|
M44890
|
Synalpheus |
|
Nucleic Acid |
156 |
2833 |
|
|
|
|
M32310
|
Althenia phyc_RAxML |
phyc_RAxML |
Nucleic Acid |
11 |
663 |
|
|
|
|
M14292
|
Locus_4.8c: Gene_CBPZ_CHICK |
Autosomal gene |
Nucleic Acid |
72 |
930 |
|
|
|
|
M991
|
Cucurbitales simultaneous |
Legacy TreeBASE Matrix ID = M2495 |
Nucleic Acid |
34 |
12073 |
|
|
|
|
M47040
|
Euterpeae 4 genes |
|
Nucleic Acid |
74 |
4593 |
|
|
|
|
M4733
|
Melinidinae cpDNA combinado |
Legacy TreeBASE Matrix ID = M5060 |
Nucleic Acid |
70 |
4818 |
|
|
|
|
M24948
|
Cichlids FIG S1 CONCAT ALL RAxML 500bootfd |
|
Nucleic Acid |
45 |
17545 |
|
|
|
|
M4915
|
linn nuc nozabelia |
Legacy TreeBASE Matrix ID = M5011 |
Nucleic Acid |
44 |
795 |
|
|
|
|
M1749
|
Fig. 1b |
Legacy TreeBASE Matrix ID = M3094 |
Nucleic Acid |
50 |
651 |
|
|
|
|
M42939
|
Bonnetina and Related Tarantulas I3568 |
|
Nucleic Acid |
88 |
903 |
|
|
|
|
M2263
|
ITS1 5.8S ITS2 with P2-6 |
Legacy TreeBASE Matrix ID = M757 |
Nucleic Acid |
14 |
580 |
|
|
|
|
M4515
|
12S, 16S, Control Region, S7 rib prot. first intron |
Legacy TreeBASE Matrix ID = M4410 |
Nucleic Acid |
55 |
2255 |
|
|
|
|
M191
|
COII |
Legacy TreeBASE Matrix ID = M1015 |
Nucleic Acid |
57 |
1002 |
|
|
|
|
M1227
|
Fig. 3 |
Legacy TreeBASE Matrix ID = M2728 |
Nucleic Acid |
49 |
9743 |
|
|
|
|
M1216
|
Salamandrid tRNALeu-COI |
Legacy TreeBASE Matrix ID = M2718 |
Nucleic Acid |
96 |
2765 |
|
|
|
|
M1710
|
ND4-Leu |
Legacy TreeBASE Matrix ID = M3051 |
Nucleic Acid |
34 |
868 |
|
|
|
|
M2133
|
12S mtDNA |
Legacy TreeBASE Matrix ID = M503 |
Nucleic Acid |
30 |
321 |
|
|
|
|
M882
|
FPS2-Micromeria |
Legacy TreeBASE Matrix ID = M2979 |
Nucleic Acid |
19 |
565 |
|
|
|
|
M14309
|
Locus_Musk: Gene_Musk |
Z-linked gene |
Nucleic Acid |
72 |
605 |
|
|
|
|
M3378
|
cytb |
Legacy TreeBASE Matrix ID = M4189 |
Nucleic Acid |
12 |
699 |
|
|
|
|
M14351
|
Crematogaster LW Rh, ArgK, CAD, Top1 and Wg |
|
Nucleic Acid |
132 |
3759 |
|
|
|
|
M26081
|
Alignment Hyla |
charset 12SrRNA = 1-922; charset 16SrRNA = 923-1183; charset tRNALeu = 1184-1257; charset ND1 = 1258-2091; charset POMC = 2092-2613; |
Nucleic Acid |
73 |
2613 |
|
|
|
|
M52866
|
Plantago |
|
Nucleic Acid |
96 |
164720 |
|
|
|
|
M10331
|
Toucan Barbet cytb |
|
Nucleic Acid |
33 |
925 |
|
|
|
|
M23664
|
Guloninae-15475 |
|
Nucleic Acid |
11 |
15475 |
|
|
|
|
M4545
|
Actin type I, ITS rDNA |
Legacy TreeBASE Matrix ID = M4821 |
Nucleic Acid |
48 |
1142 |
|
|
|
|
M3282
|
18S Flotidae |
Legacy TreeBASE Matrix ID = M3950 |
Nucleic Acid |
17 |
2067 |
|
|
|
|
M5103
|
28S rDNA |
nDNA |
Nucleic Acid |
103 |
340 |
|
|
|
|
M1780
|
62-genes 4 |
Legacy TreeBASE Matrix ID = M3123 |
Nucleic Acid |
14 |
5958 |
|
|
|
|
M15585
|
TUB-ACT-RPB2 |
beta-tubulin + alpha-actin + RPB2 |
Nucleic Acid |
131 |
4089 |
|
|
|
|
M3158
|
ALBC 6 marker |
Legacy TreeBASE Matrix ID = M3816 |
Nucleic Acid |
66 |
7945 |
|
|
|
|
M1884
|
Spermophilus X Chromosome DNA |
Legacy TreeBASE Matrix ID = M3238 |
Nucleic Acid |
5 |
1068 |
|
|
|
|
M5736
|
ITS Cordioideae |
|
Nucleic Acid |
114 |
666 |
|
|
|
|
M153
|
12S |
Legacy TreeBASE Matrix ID = M1770 |
Nucleic Acid |
13 |
447 |
|
|
|
|
M4754
|
TCoffee.nex |
Legacy TreeBASE Matrix ID = M4945 |
Nucleic Acid |
110 |
13286 |
|
|
|
|
M401
|
Cytochrome b |
Legacy TreeBASE Matrix ID = M1253 |
Nucleic Acid |
85 |
433 |
|
|
|
|
M36715
|
Hippocastaneae psbA |
|
Nucleic Acid |
31 |
740 |
|
|
|
|
M2561
|
ITS1 |
Legacy TreeBASE Matrix ID = M2070 |
Nucleic Acid |
53 |
842 |
|
|
|
|
M1931
|
28SA |
Legacy TreeBASE Matrix ID = M3289 |
Nucleic Acid |
58 |
801 |
|
|
|
|
M37179
|
Neotropical spiral gingers Partitioned Sequence |
nexus sequence matrix |
Nucleic Acid |
85 |
5145 |
|
|
|
|
M37051
|
Diatoms atpB, psaA, psaB, psbA, psbC and rbcL |
|
Nucleic Acid |
208 |
9349 |
|
|
|
|
M1340
|
16S rDNA |
Legacy TreeBASE Matrix ID = M2143 |
Nucleic Acid |
27 |
485 |
|
|
|
|
M4457
|
Yunganastes 12S & 16S |
Legacy TreeBASE Matrix ID = M4514 |
Nucleic Acid |
375 |
1312 |
|
|
|
|
M1073
|
chloroplast DNA |
Legacy TreeBASE Matrix ID = M2583 |
Nucleic Acid |
68 |
5274 |
|
|
|
|
M4924
|
linn nuc |
Legacy TreeBASE Matrix ID = M5012 |
Nucleic Acid |
51 |
795 |
|
|
|
|
M5102
|
18S rDNA |
nDNA |
Nucleic Acid |
103 |
1855 |
|
|
|
|
M33132
|
Almeida et al. combined matrix |
|
Nucleic Acid |
149 |
1980 |
|
|
|
|
M622
|
c-myc/RAG1 nuDNA |
Legacy TreeBASE Matrix ID = M1521 |
Nucleic Acid |
46 |
4483 |
|
|
|
|
M37391
|
Hydrachnidiae 3 genes 2014 modified |
|
Nucleic Acid |
122 |
7140 |
|
|
|
|
M3019
|
non-coding |
Legacy TreeBASE Matrix ID = M3620 |
Nucleic Acid |
31 |
4526 |
|
|
|
|
M4239
|
Concatenated Dataset |
Legacy TreeBASE Matrix ID = M4786 |
Nucleic Acid |
21 |
10648 |
|
|
|
|
M1456
|
Combined data |
Legacy TreeBASE Matrix ID = M2266 |
Nucleic Acid |
51 |
5638 |
|
|
|
|
M3288
|
12S rRNA 815bp |
Legacy TreeBASE Matrix ID = M3956 |
Nucleic Acid |
13 |
815 |
|
|
|
|
M14298
|
Locus_9.93: Gene_DNAJA5 |
Z-linked gene |
Nucleic Acid |
72 |
520 |
|
|
|
|
M3211
|
Blue Sheep D loop |
Legacy TreeBASE Matrix ID = M3873 |
Nucleic Acid |
44 |
574 |
|
|
|
|
M39086
|
Prionotinae RAG 1 |
recombination activating gene 1 |
Nucleic Acid |
44 |
700 |
|
|
|
|
M51224
|
Chaetocerotaceae rbcL-psbA |
rbcL-psbA |
Nucleic Acid |
94 |
2238 |
|
|
|
|
M44224
|
Ferns-part2 |
|
Nucleic Acid |
136 |
217962 |
|
|
|
|
M49940
|
Polystichum rbCL 27.6.2018 |
rbCL alignment |
Nucleic Acid |
49 |
1188 |
|
|
|
|
M9750
|
ITS Sequences |
ITS sequences |
Nucleic Acid |
90 |
823 |
|
|
|
|
M1593
|
28S COI Morph |
Legacy TreeBASE Matrix ID = M2440 |
Combination |
95 |
1641 |
|
|
|
|
M12305
|
PEPC |
fourth intron of the phosphoenolpyruvate carboxylase gene |
Nucleic Acid |
86 |
588 |
|
|
|
|
M49942
|
Polystichum trnLF 27.6.2018 |
trnLF alignment |
Nucleic Acid |
48 |
391 |
|
|
|
|
M1861
|
16S rRNA lacertids |
Legacy TreeBASE Matrix ID = M3214 |
Nucleic Acid |
58 |
540 |
|
|
|
|
M14300
|
Locus_26.59: Gene_DOCK8 |
Z-linked gene |
Nucleic Acid |
72 |
686 |
|
|
|
|
M2264
|
ITS1 with P2-6 |
Legacy TreeBASE Matrix ID = M758 |
Nucleic Acid |
21 |
211 |
|
|
|
|
M21614
|
MRPs Gblocks concatenated |
concatenated alignment of MRPs trimmed with Gblocks |
Amino Acid |
25 |
8456 |
|
|
|
|
M1008
|
ITS and ETS nrDNA |
Legacy TreeBASE Matrix ID = M2513 |
Nucleic Acid |
69 |
1586 |
|
|
|
|
M24338
|
Wood-decaying fungi 18S |
|
Nucleic Acid |
59 |
1501 |
|
|
|
|
M146
|
COI |
Legacy TreeBASE Matrix ID = M1710 |
Nucleic Acid |
37 |
630 |
|
|
|
|
M3732
|
Heterixalus |
Legacy TreeBASE Matrix ID = M3405 |
Nucleic Acid |
42 |
4876 |
|
|
|
|
M1835
|
cytb and 16S mtDNA |
Legacy TreeBASE Matrix ID = M3191 |
Nucleic Acid |
65 |
811 |
|
|
|
|
M3400
|
PRK |
Legacy TreeBASE Matrix ID = M4292 |
Nucleic Acid |
21 |
677 |
|
|
|
|
M8857
|
SatoLMS Musteloidea |
|
Nucleic Acid |
46 |
8492 |
|
|
|
|
M35383
|
Hawaiian endemic mints chloroplast SNP 105 taxa Alignment |
|
Nucleic Acid |
105 |
750 |
|
|
|
|
M35436
|
Xylariaceae beta-tubulin intron8 recoded |
Xylariomycetidae |
Unspecified |
520 |
191 |
|
|
|
|
M919
|
18S 28S 12S rRNA 16S tRNAs COI |
Legacy TreeBASE Matrix ID = M3011 |
Nucleic Acid |
51 |
4550 |
|
|
|
|
M4243
|
ITS |
Legacy TreeBASE Matrix ID = M4436 |
Nucleic Acid |
158 |
661 |
|
|
|
|
M4179
|
Rag-1 |
Legacy TreeBASE Matrix ID = M3076 |
Nucleic Acid |
83 |
830 |
|
|
|
|
M506
|
16S rRNA |
Legacy TreeBASE Matrix ID = M1387 |
Nucleic Acid |
21 |
524 |
|
|
|
|
M32324
|
Althenia matkndhfrbclrpobrpoc1phyc_Bayes |
matkndhfrbclrpobrpoc1phyc_Bayes |
Nucleic Acid |
14 |
4439 |
|
|
|
|
M34358
|
Micropontica mt |
Micropontica_mt |
Nucleic Acid |
40 |
1126 |
|
|
|
|
M9748
|
cpGaps |
coded gaps of the plastid data set |
Matrix Representation |
54 |
181 |
|
|
|
|
M37088
|
Rhizoplaca 7 genes 23 June 2015 PELT |
|
Nucleic Acid |
35 |
4146 |
|
|
|
|
M942
|
ImpDEF1 |
Legacy TreeBASE Matrix ID = M3032 |
Nucleic Acid |
53 |
809 |
|
|
|
|
M14301
|
Locus_29.41: Gene_PTPRD |
Z-linked gene |
Nucleic Acid |
72 |
819 |
|
|
|
|
M3148
|
18S NJ |
Legacy TreeBASE Matrix ID = M3794 |
Nucleic Acid |
24 |
2283 |
|
|
|
|
M45775
|
Australasian orchids Nuclear alignment for divergence dating |
|
Nucleic Acid |
60 |
773 |
|
|
|
|
M11542
|
Chenopodium ITS |
|
Nucleic Acid |
141 |
821 |
|
|
|
|
M5704
|
DNA |
Alignment of chloroplast (psbA-trnH spacer, trnL intron and trnL-trnF spacer) and nuclear (the external transcribed spacer or ETS of the ribosomal repeat unit) DNA sequences |
Nucleic Acid |
73 |
1997 |
|
|
|
|
M4801
|
Melinidinae trnLF |
Legacy TreeBASE Matrix ID = M5058 |
Nucleic Acid |
70 |
1264 |
|
|
|
|
M16060
|
Data CC Triturus |
|
Nucleic Acid |
40 |
421 |
|
|
|
|
M6825
|
4 Partition |
|
Nucleic Acid |
67 |
2144 |
|
|
|
|
M2407
|
combined |
Legacy TreeBASE Matrix ID = M1769 |
Nucleic Acid |
9 |
1590 |
|
|
|
|
M1040
|
rps19-rps3 |
Legacy TreeBASE Matrix ID = M2553 |
Nucleic Acid |
60 |
660 |
|
|
|
|
M1426
|
cytb and ATPase |
Legacy TreeBASE Matrix ID = M2234 |
Nucleic Acid |
44 |
1953 |
|
|
|
|
M51068
|
Zoopagales AA 192 OGs |
|
Amino Acid |
46 |
57321 |
|
|
|
|
M1862
|
RAG-1 lacertids |
Legacy TreeBASE Matrix ID = M3215 |
Nucleic Acid |
58 |
1100 |
|
|
|
|
M11026
|
nc matrix for dating |
phyC without similar sequences |
Nucleic Acid |
81 |
1067 |
|
|
|
|
M707
|
Neillia_ITS |
Legacy TreeBASE Matrix ID = M1615 |
Nucleic Acid |
19 |
608 |
|
|
|
|
M3379
|
CAD |
Legacy TreeBASE Matrix ID = M4190 |
Nucleic Acid |
12 |
612 |
|
|
|
|
M11164
|
CytB gene |
|
|
19 |
432 |
|
|
|
|
M14299
|
Locus_10.39: Gene_RANBP3L |
Z-linked gene |
Nucleic Acid |
72 |
738 |
|
|
|
|
M4497
|
Salamandrid mitogenome B |
Legacy TreeBASE Matrix ID = M4338 |
Nucleic Acid |
42 |
7131 |
|
|
|
|
M1997
|
Gammarus 18SrDNA |
Legacy TreeBASE Matrix ID = M3351 |
Nucleic Acid |
64 |
2064 |
|
|
|
|
M1470
|
Crown-only 83-taxon 18S rRNA |
Legacy TreeBASE Matrix ID = M2280 |
Nucleic Acid |
83 |
1858 |
|
|
|
|
M2543
|
Chloroplast |
Legacy TreeBASE Matrix ID = M1912 |
Nucleic Acid |
51 |
7072 |
|
|
|
|
M20136
|
OCM1 AA exc3 |
|
Amino Acid |
97 |
716 |
|
|
|
|
M24951
|
Cichlids FIG S1 CONCAT ALL mrbayes2 |
|
Nucleic Acid |
45 |
17545 |
|
|
|
|
M23662
|
Guloninae-11362 |
|
Nucleic Acid |
11 |
11362 |
|
|
|
|
M2534
|
Cyphelloid25S |
Legacy TreeBASE Matrix ID = M1902 |
Nucleic Acid |
209 |
977 |
|
|
|
|
M4850
|
Paniceae ndhF |
Legacy TreeBASE Matrix ID = M5056 |
Nucleic Acid |
331 |
2166 |
|
|
|
|
M5436
|
Concatenated Dataset |
12S = 1-750; Cox1 = 751-1500; Cox3 = 1501-2250; Cyt-b = 2251-3000; NADH-1 = 3001-3750; NADH-2 = 3751-4500; NADH-4 = 4501-5250; NADH-5 = 5251-6000; 18S = 6001-6750; 28S = 6751-7500; bdnf = 7501-8250; rag1 = 8251-9000; |
Nucleic Acid |
28 |
9000 |
|
|
|
|
M804
|
Sycoscapter 28S rDNA+Cytb |
Legacy TreeBASE Matrix ID = M956 |
Nucleic Acid |
16 |
1165 |
|
|
|
|
M210
|
18S |
Legacy TreeBASE Matrix ID = M1034 |
Nucleic Acid |
67 |
1871 |
|
|
|
|
M23765
|
Aligned Passerine Mitogenomes (tRNA-Phe to tRNA-Thr) |
|
Nucleic Acid |
125 |
15392 |
|
|
|
|
M1329
|
RPB2 |
Legacy TreeBASE Matrix ID = M2132 |
Nucleic Acid |
68 |
1707 |
|
|
|
|
M3261
|
ITS trnLF matK |
Legacy TreeBASE Matrix ID = M3926 |
Nucleic Acid |
82 |
4080 |
|
|
|
|
M3473
|
Actin BetaTubulin |
Legacy TreeBASE Matrix ID = M2346 |
Nucleic Acid |
27 |
1926 |
|
|
|
|
M1782
|
62-genes 1 |
Legacy TreeBASE Matrix ID = M3125 |
Nucleic Acid |
14 |
10000 |
|
|
|
|
M1938
|
COI |
Legacy TreeBASE Matrix ID = M3296 |
Unspecified |
17 |
603 |
|
|
|
|
M2998
|
cpDNA Chionohebe |
Legacy TreeBASE Matrix ID = M3598 |
Nucleic Acid |
76 |
1295 |
|
|
|
|
M35414
|
Xylariaceae Beta-tubulin nucleotide alignment |
Xylariaceae |
Nucleic Acid |
367 |
1053 |
|
|
|
|
M5738
|
ndhF Boraginaceae |
|
Nucleic Acid |
39 |
2190 |
|
|
|
|
M3955
|
alignment |
Legacy TreeBASE Matrix ID = M777 |
Nucleic Acid |
17 |
1521 |
|
|
|
|
M909
|
Caenogastropoda all data |
Legacy TreeBASE Matrix ID = M3002 |
Nucleic Acid |
36 |
3995 |
|
|
|
|
M2272
|
16S + COI |
Legacy TreeBASE Matrix ID = M765 |
Nucleic Acid |
24 |
1012 |
|
|
|
|
M3748
|
Homalonychus mtDNA-16S, leutRNA, ND1 |
Legacy TreeBASE Matrix ID = M3425 |
Nucleic Acid |
198 |
935 |
|
|
|
|
M9057
|
Hypopachus 12S, 16S, rhodopsin DNA data |
|
Nucleic Acid |
54 |
1275 |
|
|
|
|
M3935
|
EF1a DNA |
Legacy TreeBASE Matrix ID = M3467 |
Nucleic Acid |
17 |
347 |
|
|
|
|
M4859
|
Melinidinae ndhF |
Legacy TreeBASE Matrix ID = M5059 |
Nucleic Acid |
70 |
2142 |
|
|
|
|
M45774
|
Australasian orchids Plastid alignment |
|
Nucleic Acid |
138 |
3544 |
|
|
|
|
M476
|
MatK |
Legacy TreeBASE Matrix ID = M1354 |
Nucleic Acid |
86 |
1519 |
|
|
|
|
M2269
|
5.8S P1-9 |
Legacy TreeBASE Matrix ID = M762 |
Nucleic Acid |
16 |
158 |
|
|
|
|
M2619
|
Combined nuclear DNA and tree 8B |
Legacy TreeBASE Matrix ID = M2791 |
Nucleic Acid |
41 |
1644 |
|
|
|
|
M35428
|
Xylariaceae beta-tubulin alignment |
Xylariomycetidae |
Nucleic Acid |
520 |
1053 |
|
|
|
|
M4806
|
Phrynobatrachus Fig. 2 Combined |
Legacy TreeBASE Matrix ID = M4958 |
Nucleic Acid |
223 |
4015 |
|
|
|
|
M1059
|
16 taxa--combined data |
Legacy TreeBASE Matrix ID = M2570 |
Nucleic Acid |
29 |
6428 |
|
|
|
|
M3136
|
Sebastes Phylogeny |
Legacy TreeBASE Matrix ID = M3780 |
Nucleic Acid |
103 |
5581 |
|
|
|
|
M3206
|
Combined (COI+16S+ATPSa) |
Legacy TreeBASE Matrix ID = M3868 |
Nucleic Acid |
176 |
1734 |
|
|
|
|
M14267
|
NIP dataset (two state encoding) |
Near Intron Pair characters (binary characters with states 1/2) |
Morphological |
48 |
73593 |
|
|
|
|
M3117
|
combined mtDNA nrDNA |
Legacy TreeBASE Matrix ID = M3759 |
Nucleic Acid |
39 |
4741 |
|
|
|
|
M3402
|
CAD5 |
Legacy TreeBASE Matrix ID = M4294 |
Nucleic Acid |
14 |
376 |
|
|
|
|
M21616
|
S Blocks |
unmasked proteins of the small ribosomal subunit |
Amino Acid |
25 |
17924 |
|
|
|
|
M14847
|
ITS2 |
ITS2_alignment_Pectinidae |
Nucleic Acid |
26 |
383 |
|
|
|
|
M2769
|
MAT1-2 AA 1 |
Legacy TreeBASE Matrix ID = M2345 |
Amino Acid |
7 |
232 |
|
|
|
|
M6363
|
Microlipophrys 12S, 16S, s7, Rhodopsin |
|
Nucleic Acid |
25 |
2373 |
|
|
|
|
M32313
|
Althenia phyc_Bayes |
phyc_Bayes |
Nucleic Acid |
11 |
663 |
|
|
|
|
M2465
|
WAXY1 |
Legacy TreeBASE Matrix ID = M1825 |
Nucleic Acid |
47 |
908 |
|
|
|
|
M1237
|
Morphology |
Legacy TreeBASE Matrix ID = M2737 |
Morphological |
73 |
68 |
|
|
|
|
M2409
|
16S |
Legacy TreeBASE Matrix ID = M1771 |
Nucleic Acid |
11 |
459 |
|
|
|
|
M44223
|
Ferns-part1 |
|
Nucleic Acid |
136 |
218554 |
|
|
|
|
M2169
|
cytochrome b |
Legacy TreeBASE Matrix ID = M537 |
Nucleic Acid |
19 |
702 |
|
|
|
|
M1510
|
18S and 28S Secondary Structure Alignment |
Legacy TreeBASE Matrix ID = M2360 |
Nucleic Acid |
30 |
4707 |
|
|
|
|
M37086
|
Rhizoplaca 7 genes 23 June 2015 SUBD |
|
Nucleic Acid |
41 |
4206 |
|
|
|
|
M4161
|
Skinks, ND2 ND4 Cytb 12SrRNA 16SrRNA Rag-1 |
Legacy TreeBASE Matrix ID = M4442 |
Nucleic Acid |
92 |
4062 |
|
|
|
|
M2279
|
COI |
Legacy TreeBASE Matrix ID = M844 |
Amino Acid |
22 |
349 |
|
|
|
|
M35412
|
Xylariaceae LSU (i.e., 28S) |
Xylariaceae |
Nucleic Acid |
367 |
1339 |
|
|
|
|
M1044
|
COI |
Legacy TreeBASE Matrix ID = M2557 |
Nucleic Acid |
67 |
948 |
|
|
|
|
M24341
|
Wood-decaying fungi ITS |
|
Nucleic Acid |
59 |
671 |
|
|
|
|
M4335
|
Actin type I |
Legacy TreeBASE Matrix ID = M4823 |
Nucleic Acid |
44 |
622 |
|
|
|
|
M32311
|
Althenia matkndhfrbclrpobrpoc1_RAxML |
matkndhfrbclrpobrpoc1_RAxML |
Nucleic Acid |
14 |
3776 |
|
|
|
|
M3948
|
Hexact2_rDNA_Combined |
Legacy TreeBASE Matrix ID = M4266 |
Nucleic Acid |
60 |
3426 |
|
|
|
|
M3170
|
Complete Dataset |
Legacy TreeBASE Matrix ID = M3832 |
Nucleic Acid |
135 |
4362 |
|
|
|
|
M1336
|
chdb |
Legacy TreeBASE Matrix ID = M2139 |
Nucleic Acid |
117 |
336 |
|
|
|
|
M36711
|
Hippocastaneae trnLF |
|
Nucleic Acid |
26 |
1047 |
|
|
|
|
M300
|
Fig. 2 |
Legacy TreeBASE Matrix ID = M1133 |
Nucleic Acid |
26 |
474 |
|
|
|
|
M24954
|
Cichlids FIG S3 CONCAT subset1 RAxML |
|
Nucleic Acid |
45 |
5872 |
|
|
|
|
M3373
|
RPII |
Legacy TreeBASE Matrix ID = M4184 |
Nucleic Acid |
12 |
393 |
|
|
|
|
M3401
|
Malate Synthase |
Legacy TreeBASE Matrix ID = M4293 |
Nucleic Acid |
22 |
515 |
|
|
|
|
M783
|
Sexdentati 28S |
Legacy TreeBASE Matrix ID = M1713 |
Nucleic Acid |
5 |
725 |
|
|
|
|
M320
|
ITS, ACT, CAL and EF |
Legacy TreeBASE Matrix ID = M1156 |
Nucleic Acid |
35 |
1822 |
|
|
|
|
M33182
|
Vincetoxicum ETS |
|
Nucleic Acid |
140 |
378 |
|
|
|
|
M4886
|
POY_implied |
Legacy TreeBASE Matrix ID = M4942 |
Nucleic Acid |
110 |
12050 |
|
|
|
|
M14379
|
Hypericum morphology data matrix |
|
Morphological |
360 |
8 |
|
|
|
|
M1887
|
tRNAs + D-loop |
Legacy TreeBASE Matrix ID = M3240 |
Nucleic Acid |
33 |
572 |
|
|
|
|
M4762
|
linn pla |
Legacy TreeBASE Matrix ID = M5010 |
Nucleic Acid |
51 |
3908 |
|
|
|
|
M943
|
ImpDEF2 |
Legacy TreeBASE Matrix ID = M3033 |
Nucleic Acid |
55 |
1566 |
|
|
|
|
M14310
|
Locus_COX1: Gene_COX1 |
mtDNA gene |
Nucleic Acid |
72 |
801 |
|
|
|
|
M31282
|
Asarum |
|
Nucleic Acid |
47 |
8326 |
|
|
|
|
M4928
|
Figure 3B total |
Legacy TreeBASE Matrix ID = M5085 |
Nucleic Acid |
16 |
3458 |
|
|
|
|
M23893
|
Entos 75x1827 |
|
|
75 |
1827 |
|
|
|
|
M704
|
Neillia_cpDNA |
Legacy TreeBASE Matrix ID = M1612 |
Nucleic Acid |
19 |
2694 |
|
|
|
|
M48975
|
Pelargonium Plastome alignment |
|
Nucleic Acid |
139 |
64388 |
|
|
|
|
M49913
|
Phalacrocoracidae Sequence data combined |
Combined mitochondrial and nuclear DNA |
Nucleic Acid |
47 |
9016 |
|
|
|
|
M4930
|
Melinidiniae rpl16 |
Legacy TreeBASE Matrix ID = M5057 |
Nucleic Acid |
70 |
1412 |
|
|
|
|
M52448
|
Orchidaceae 76sp 76cp |
|
Nucleic Acid |
76 |
63246 |
|
|
|
|
M4763
|
Muscle.nex |
Legacy TreeBASE Matrix ID = M4943 |
Nucleic Acid |
110 |
11264 |
|
|
|
|
M8057
|
nrDNA + cpDNA |
|
|
81 |
5368 |
|
|
|
|
M147
|
Table 1 |
Legacy TreeBASE Matrix ID = M171c6x23x97c18c01c10 |
Nucleic Acid |
41 |
1428 |
|
|
|
|
M642
|
Lysimachia ITS |
Legacy TreeBASE Matrix ID = M1543 |
Nucleic Acid |
60 |
664 |
|
|
|
|
M1343
|
combined |
Legacy TreeBASE Matrix ID = M2146 |
Nucleic Acid |
15 |
2270 |
|
|
|
|
M1786
|
15-gene data set |
Legacy TreeBASE Matrix ID = M3129 |
Nucleic Acid |
15 |
8541 |
|
|
|
|
M33574
|
Caucasotachea Data file 3 |
|
Nucleic Acid |
92 |
655 |
|
|
|
|
M2268
|
ITS1 5.8S ITS2 with P4-5 P4-7 |
Legacy TreeBASE Matrix ID = M761 |
Nucleic Acid |
21 |
564 |
|
|
|
|
M21074
|
Kinosternidae nuclear DNA matrix |
14 concatenated nuclear loci |
Nucleic Acid |
49 |
10305 |
|
|
|
|
M3279
|
CytB Flotidae |
Legacy TreeBASE Matrix ID = M3947 |
Nucleic Acid |
17 |
390 |
|
|
|
|
M1048
|
Hoya ITS |
Legacy TreeBASE Matrix ID = M2560 |
Nucleic Acid |
105 |
797 |
|
|
|
|
M7956
|
Trout matrix - 22 loci |
|
Nucleic Acid |
36 |
8006 |
|
|
|
|
M21660
|
Lecanoromycetes 5+4+3+2-locus matrix |
Lecanoromycetes combined loci |
Nucleic Acid |
1317 |
7433 |
|
|
|
|
M708
|
Neillia_LFY |
Legacy TreeBASE Matrix ID = M1616 |
Nucleic Acid |
19 |
1818 |
|
|
|
|
M2571
|
Combined mitochondrial and nuclear DNA |
Legacy TreeBASE Matrix ID = M2790 |
Nucleic Acid |
43 |
5775 |
|
|
|
|
M33176
|
Vincetoxicum trnLF |
|
Nucleic Acid |
140 |
371 |
|
|
|
|
M30065
|
Nylanderia Calibrated Fossil |
|
Nucleic Acid |
187 |
4374 |
|
|
|
|
M25011
|
Aureostipes |
|
Nucleic Acid |
10 |
3546 |
|
|
|
|
M14307
|
Locus_7878620: Gene_PARP8 |
Z-linked gene |
Nucleic Acid |
72 |
1069 |
|
|
|
|
M4472
|
Salamandrid mitogenome A |
Legacy TreeBASE Matrix ID = M4337 |
Nucleic Acid |
42 |
7330 |
|
|
|
|
M3001
|
12Sand16S |
Legacy TreeBASE Matrix ID = M3601 |
Nucleic Acid |
18 |
807 |
|
|
|
|
M1905
|
Kachuga |
Legacy TreeBASE Matrix ID = M3260 |
Nucleic Acid |
18 |
4015 |
|
|
|
|
M12304
|
ITS |
Internal Transcribed Spacer |
Nucleic Acid |
83 |
754 |
|
|
|
|
M37084
|
Rhizoplaca 7 genes 23 June 2015 CHRYSO |
|
Nucleic Acid |
129 |
4205 |
|
|
|
|
M21001
|
Terrarana Tyr, RAG1, 12S, tRNA-Val, and 16S) |
|
Nucleic Acid |
364 |
4119 |
|
|
|
|
M1459
|
mtDNA (COI, COII, ATPase 8) |
Legacy TreeBASE Matrix ID = M2269 |
Nucleic Acid |
45 |
1158 |
|
|
|
|
M58621
|
Solanum section Brevantherum ITS WAXY TRN T-F |
|
Nucleic Acid |
73 |
4139 |
|
|
|
|
M4856
|
mtDNA for ranids |
Legacy TreeBASE Matrix ID = M4940 |
Amino Acid |
39 |
3280 |
|
|
|
|
M1134
|
Fig1A |
Legacy TreeBASE Matrix ID = M2641 |
Amino Acid |
18 |
326 |
|
|
|
|
M1717
|
trnL-F-Aniso |
Legacy TreeBASE Matrix ID = M3058 |
Nucleic Acid |
35 |
567 |
|
|
|
|
M2262
|
5.8 and 6 clones |
Legacy TreeBASE Matrix ID = M756 |
Nucleic Acid |
24 |
160 |
|
|
|
|
M1328
|
B-tubulin |
Legacy TreeBASE Matrix ID = M2131 |
Nucleic Acid |
70 |
773 |
|
|
|
|
M32308
|
Althenia matkndhfrbclrpobrpoc1phyc_RAxML |
matkndhfrbclrpobrpoc1phyc_RAxML |
Nucleic Acid |
14 |
4439 |
|
|
|
|
M35432
|
Xylariaceae beta-tubulin intron1 recoded |
Xylariomycetidae |
Unspecified |
520 |
218 |
|
|
|
|
M4174
|
COI |
Legacy TreeBASE Matrix ID = M4528 |
Nucleic Acid |
72 |
999 |
|
|
|
|
M1948
|
Thamnophilid Antbirds- bf5, nd2, nd3, cytb |
Legacy TreeBASE Matrix ID = M3304 |
Nucleic Acid |
74 |
3008 |
|
|
|
|
M1060
|
preliminary data--waxy |
Legacy TreeBASE Matrix ID = M2571 |
Nucleic Acid |
290 |
676 |
|
|
|
|
M40121
|
Trichomycetes 3-genes |
|
Nucleic Acid |
27 |
5126 |
|
|
|
|
M14378
|
Hypericum ITS alignment |
|
Nucleic Acid |
360 |
771 |
|
|
|
|
M33533
|
Caucasotachea Data file 1 |
|
Nucleic Acid |
92 |
655 |
|
|
|
|
M35417
|
Xylariaceae ITS1 rDNA recoded |
Xylariaceae |
Unspecified |
367 |
91 |
|
|
|
|
M1591
|
ndhF F1 |
Legacy TreeBASE Matrix ID = M2439 |
Nucleic Acid |
61 |
2131 |
|
|
|
|
M13319
|
18S rDNA Alignment |
|
Nucleic Acid |
44 |
2183 |
|
|
|
|
M1499
|
Chromosome Y |
Legacy TreeBASE Matrix ID = M2310 |
Nucleic Acid |
12 |
1681 |
|
|
|
|
M4851
|
SSU GBlock3 38 taxa F2A |
Legacy TreeBASE Matrix ID = M4974 |
Nucleic Acid |
38 |
1285 |
|
|
|
|
M4629
|
Figure1 |
Legacy TreeBASE Matrix ID = M4334 |
Nucleic Acid |
35 |
8294 |
|
|
|
|
M4560
|
All Four Genes (EF1G, 18S, 28S, COX1) |
Legacy TreeBASE Matrix ID = M4538 |
Nucleic Acid |
17 |
4381 |
|
|
|
|
M1235
|
Intersection |
Legacy TreeBASE Matrix ID = M2735 |
Combination |
53 |
1606 |
|
|
|
|
M4190
|
Red Panda?s: IRBP, RAG1, APOB26, vWF, BRCA1 |
Legacy TreeBASE Matrix ID = M4667 |
Nucleic Acid |
51 |
5497 |
|
|
|
|
M3595
|
Arachnids |
Legacy TreeBASE Matrix ID = M4162 |
Amino Acid |
21 |
2762 |
|
|
|
|
M35430
|
Xylariaceae ITS1 rDNA recoded |
Xylariomycetidae |
Unspecified |
520 |
104 |
|
|
|
|
M1334
|
mtDNA control region domains I & II |
Legacy TreeBASE Matrix ID = M2137 |
Nucleic Acid |
88 |
696 |
|
|
|
|
M1777
|
62-genes 2 |
Legacy TreeBASE Matrix ID = M3120 |
Nucleic Acid |
14 |
10000 |
|
|
|
|
M3756
|
Antonelli MPE Lobelioideae |
Legacy TreeBASE Matrix ID = M3435 |
Combination |
76 |
3823 |
|
|
|
|
M2410
|
COII |
Legacy TreeBASE Matrix ID = M1772 |
Nucleic Acid |
31 |
684 |
|
|
|
|
M3698
|
12S |
Legacy TreeBASE Matrix ID = M826 |
Nucleic Acid |
16 |
377 |
|
|
|
|
M4351
|
28S Manual alignment |
Legacy TreeBASE Matrix ID = M4529 |
Nucleic Acid |
41 |
1197 |
|
|
|
|
M42937
|
Bonnetina and Related Tarantulas Mid1IP1 |
|
Nucleic Acid |
88 |
550 |
|
|
|
|
M4923
|
linn pla nozabelia |
Legacy TreeBASE Matrix ID = M5009 |
Nucleic Acid |
44 |
3908 |
|
|
|
|
M1130
|
Fig2B |
Legacy TreeBASE Matrix ID = M2638 |
Amino Acid |
18 |
378 |
|
|
|
|
M931
|
28S rRNA |
Legacy TreeBASE Matrix ID = M3022 |
Nucleic Acid |
81 |
1761 |
|
|
|
|
M10182
|
Bufo bufo species group mtDNA haplotypes |
Bufo bufo species group mtDNA haplotypes |
Nucleic Acid |
123 |
1239 |
|
|
|
|
M36710
|
Hippocastaneae trnC |
|
Nucleic Acid |
34 |
772 |
|
|
|
|
M3166
|
28S and 18S |
Legacy TreeBASE Matrix ID = M3828 |
Nucleic Acid |
107 |
8340 |
|
|
|
|
M12775
|
12S |
|
Nucleic Acid |
50 |
875 |
|
|
|
|
M1102
|
combined nuclear data (Figure 3) |
Legacy TreeBASE Matrix ID = M2609 |
Nucleic Acid |
21 |
2215 |
|
|
|
|
M4690
|
Fig. 2 Barnadesioideae |
Legacy TreeBASE Matrix ID = M4380 |
Nucleic Acid |
45 |
7298 |
|
|
|
|
M1963
|
WRKY 12-13-14 |
Legacy TreeBASE Matrix ID = M3318 |
Nucleic Acid |
23 |
2188 |
|
|
|
|
M3312
|
54t DNA all regions |
Legacy TreeBASE Matrix ID = M4001 |
Nucleic Acid |
54 |
10203 |
|
|
|
|
M1474
|
Internal and external transcribed spacers of 18S-26S ribosomal DNA |
Legacy TreeBASE Matrix ID = M2284 |
Nucleic Acid |
40 |
1633 |
|
|
|
|
M5992
|
RPB2 matrix |
RPB2 sequence alignment for isolates from Neofusicoccum parvum/N. ribis species complex |
Nucleic Acid |
42 |
577 |
|
|
|
|
M5100
|
12S rDNA |
mtDNA |
Nucleic Acid |
103 |
462 |
|
|
|
|
M1483
|
Schoeneae plastid data |
Legacy TreeBASE Matrix ID = M2295 |
Nucleic Acid |
44 |
4339 |
|
|
|
|
M2466
|
combined |
Legacy TreeBASE Matrix ID = M1826 |
Nucleic Acid |
49 |
1693 |
|
|
|
|
M2349
|
28S |
Legacy TreeBASE Matrix ID = M923 |
Nucleic Acid |
30 |
773 |
|
|
|
|
M2431
|
Inocybe |
Legacy TreeBASE Matrix ID = M1793 |
Nucleic Acid |
84 |
3434 |
|
|
|
|
M3431
|
Multigene Dataset, Legacy TreeBASE Matrix ID = M3413 |
Caution: Authors suspect that some taxa may be misidentified |
Amino Acid |
38 |
2033 |
|
|
|
|
M1500
|
Chromosome X |
Legacy TreeBASE Matrix ID = M2311 |
Nucleic Acid |
14 |
832 |
|
|
|
|
M3857
|
TSHZ1 + RAG1 |
Legacy TreeBASE Matrix ID = M4137 |
Nucleic Acid |
25 |
5265 |
|
|
|
|
M886
|
Sequence_data |
Legacy TreeBASE Matrix ID = M2982 |
Nucleic Acid |
35 |
6324 |
|
|
|
|
M2544
|
combined |
Legacy TreeBASE Matrix ID = M1913 |
Nucleic Acid |
51 |
7667 |
|
|
|
|
M35425
|
Xylariaceae Beta-tubulin intron 8 recoded |
Xylaraiceae |
Unspecified |
367 |
184 |
|
|
|
|
M3380
|
CO3 |
Legacy TreeBASE Matrix ID = M4191 |
Nucleic Acid |
12 |
525 |
|
|
|
|
M3588
|
Anaxyrus boreas with outgroups Control Region, COI, 12S |
Legacy TreeBASE Matrix ID = M4155 |
Nucleic Acid |
40 |
1671 |
|
|
|
|
M3444
|
combined |
Legacy TreeBASE Matrix ID = M4073 |
Combination |
24 |
1511 |
|
|
|
|
M37085
|
Rhizoplaca 7-locus dataset, complete |
|
Nucleic Acid |
732 |
4647 |
|
|
|
|
M3021
|
mitochondrial |
Legacy TreeBASE Matrix ID = M3622 |
Nucleic Acid |
31 |
3938 |
|
|
|
|
M46810
|
Candidula mtDNA |
|
Nucleic Acid |
95 |
5604 |
|
|
|
|
M44392
|
Bottlenose Dolphins Lactalbumin Sequences |
|
Nucleic Acid |
66 |
477 |
|
|
|
|
M32306
|
Althenia phyC_MP |
phyC_MP |
Nucleic Acid |
11 |
663 |
|
|
|
|
M2430
|
mtDNA Sequence Data |
Legacy TreeBASE Matrix ID = M1792 |
Nucleic Acid |
14 |
1756 |
|
|
|
|
M3589
|
Anaxyrus boreas - Restriction Sites, Control Region, COI |
Legacy TreeBASE Matrix ID = M4156 |
Combination |
40 |
1331 |
|
|
|
|
M25014
|
Myxobasis |
|
Nucleic Acid |
14 |
3363 |
|
|
|
|
M2853
|
5xdna + morphology |
Legacy TreeBASE Matrix ID = M2059 |
Nucleic Acid |
56 |
4794 |
|
|
|
|
M36709
|
Hippocastaneae trnS |
|
Nucleic Acid |
31 |
1025 |
|
|
|
|
M44333
|
Bottlenose Dolphins Mitogenome Sequences |
Mitogenome Sequences |
Nucleic Acid |
107 |
16753 |
|
|
|
|
M4662
|
Combined, Fig 2 |
Legacy TreeBASE Matrix ID = M4330 |
Nucleic Acid |
72 |
3494 |
|
|
|
|
M1647
|
trnK-matK Piperales Hotspots excluded |
Legacy TreeBASE Matrix ID = M2891 |
Nucleic Acid |
105 |
3396 |
|
|
|
|
M5969
|
139x3306 |
|
|
139 |
3306 |
|
|
|
|
M36942
|
Dicamptodon copei cytb b and control region |
|
|
31 |
1904 |
|
|
|
|
M1714
|
matK-Aniso |
Legacy TreeBASE Matrix ID = M3055 |
Nucleic Acid |
44 |
1351 |
|
|
|
|
M1941
|
16S |
Legacy TreeBASE Matrix ID = M3299 |
Unspecified |
19 |
485 |
|
|
|
|
M15668
|
28S rRNA unambiguous positions |
28S ribosomal RNA region D1-D6 without ambigously aligned positions (431-439 452-456 528-539 553-563 577-578 598-607 658-664 732-735 748-765 889 893 918-957 1305-1308 1320-1323 1578-1604) |
Nucleic Acid |
73 |
1522 |
|
|
|
|
M3532
|
P_ridens_mtDNA_ND2WANCY.nex |
Legacy TreeBASE Matrix ID = M3715 |
Nucleic Acid |
46 |
1672 |
|
|
|
|
M2071
|
Fig. 2 |
Legacy TreeBASE Matrix ID = M433 |
Nucleic Acid |
5 |
617 |
|
|
|
|
M1460
|
GHR (growth hormone receptor) |
Legacy TreeBASE Matrix ID = M2270 |
Nucleic Acid |
49 |
981 |
|
|
|
|
M20135
|
PF16 AA exc3 |
|
Amino Acid |
97 |
403 |
|
|
|
|
M2283
|
28S COIaa morph |
Legacy TreeBASE Matrix ID = M848 |
Combination |
11 |
1171 |
|
|
|
|
M1589
|
trnL-F FS2 |
Legacy TreeBASE Matrix ID = M2437 |
Nucleic Acid |
39 |
890 |
|
|
|
|
M1238
|
Molecular |
Legacy TreeBASE Matrix ID = M2738 |
Nucleic Acid |
53 |
1538 |
|
|
|
|
M21732
|
Nothoceros |
|
Nucleic Acid |
47 |
5999 |
|
|
|
|
M5892
|
Tubificoides ITS |
|
Nucleic Acid |
62 |
2224 |
|
|
|
|
M10055
|
Funariaceae 10 gene |
|
Nucleic Acid |
44 |
6657 |
|
|
|
|
M1992
|
GammarusMt |
Legacy TreeBASE Matrix ID = M3347 |
Nucleic Acid |
72 |
1678 |
|
|
|
|
M979
|
Lifespan & Chromosome Num |
Legacy TreeBASE Matrix ID = M2474 |
Morphological |
259 |
2 |
|
|
|
|
M1498
|
mtDNA |
Legacy TreeBASE Matrix ID = M2309 |
Nucleic Acid |
32 |
2287 |
|
|
|
|
M3313
|
99t eDNA |
Legacy TreeBASE Matrix ID = M4002 |
Nucleic Acid |
99 |
10683 |
|
|
|
|
M1236
|
Union |
Legacy TreeBASE Matrix ID = M2736 |
Combination |
78 |
1606 |
|
|
|
|
M1335
|
mtDNA control region domains I, II, & III |
Legacy TreeBASE Matrix ID = M2138 |
Nucleic Acid |
8 |
1011 |
|
|
|
|
M16057
|
Data BF Triturus |
|
Nucleic Acid |
51 |
499 |
|
|
|
|
M1715
|
ITS-Aniso |
Legacy TreeBASE Matrix ID = M3056 |
Nucleic Acid |
14 |
886 |
|
|
|
|
M956
|
Stenocercus ND1-COI |
Legacy TreeBASE Matrix ID = M2450 |
Nucleic Acid |
44 |
1786 |
|
|
|
|
M1746
|
Fig. 3 |
Legacy TreeBASE Matrix ID = M3091 |
Nucleic Acid |
27 |
2136 |
|
|
|
|
M14654
|
Rosales 12 loci |
|
Nucleic Acid |
38 |
17706 |
|
|
|
|
M3151
|
COI ML unique haplotypes |
Legacy TreeBASE Matrix ID = M3797 |
Nucleic Acid |
56 |
879 |
|
|
|
|
M11165
|
ITS region |
|
|
137 |
644 |
|
|
|
|
M14814
|
Caricaceae trnL?trnF, rpl20?rps12, psbA?trnH, matK, rbcL, and ITS region |
combined alignmet (trnL?trnF, rpl20?rps12, psbA?trnH, matK, rbcL, and ITS region)e) |
Nucleic Acid |
44 |
4711 |
|
|
|
|
M30071
|
Nylanderia Calibrated COI mutation rate |
|
Nucleic Acid |
197 |
659 |
|
|
|
|
M23892
|
Entos 64x2825 |
|
|
64 |
2825 |
|
|
|
|
M1784
|
presence-absence of 261 genes |
Legacy TreeBASE Matrix ID = M3127 |
Unspecified |
19 |
261 |
|
|
|
|
M3146
|
RP2 NJ |
Legacy TreeBASE Matrix ID = M3792 |
Nucleic Acid |
54 |
602 |
|
|
|
|
M3164
|
rbcL nucleotide and indels |
Legacy TreeBASE Matrix ID = M3826 |
Nucleic Acid |
66 |
1366 |
|
|
|
|
M32330
|
Malva alliance |
|
Nucleic Acid |
43 |
5689 |
|
|
|
|
M15670
|
Histone H4 |
partial histone 4 |
Nucleic Acid |
73 |
286 |
|
|
|
|
M35427
|
Xylariaceae LSU alignment |
Xylariomycetidae |
Nucleic Acid |
520 |
1272 |
|
|
|
|
M448
|
Fig1, betatubulin+GAPDH+ITS |
Legacy TreeBASE Matrix ID = M1311 |
Nucleic Acid |
44 |
2389 |
|
|
|
|
M1993
|
Gammarus mtDNA |
Legacy TreeBASE Matrix ID = M3348 |
Nucleic Acid |
72 |
1678 |
|
|
|
|
M14286
|
Locus 1.1ny: Gene_Q5ZM32_CHICK |
Autosomal gene |
Nucleic Acid |
72 |
451 |
|
|
|
|
M33724
|
Cnidopus Complete matrix |
All loci included |
Nucleic Acid |
75 |
8470 |
|
|
|
|
M336
|
complete uninode matrix |
Legacy TreeBASE Matrix ID = M1172 |
Amino Acid |
73 |
11181 |
|
|
|
|
M1718
|
Grues nrDNA |
Legacy TreeBASE Matrix ID = M3059 |
Nucleic Acid |
39 |
2700 |
|
|
|
|
M4337
|
ITS rDNA |
Legacy TreeBASE Matrix ID = M4822 |
Nucleic Acid |
37 |
520 |
|
|
|
|
M21286
|
Tetraria triangularis: rbcL, rps16, trnLF, trnH-psbA, 3'trnV-ndhf, and nuclear ETS data |
|
Nucleic Acid |
34 |
7258 |
|
|
|
|
M2713
|
vWFDNA |
Legacy TreeBASE Matrix ID = M2103 |
Nucleic Acid |
25 |
1173 |
|
|
|
|
M4392
|
12s, ND1, ND4, tRNA |
Legacy TreeBASE Matrix ID = M4657 |
Nucleic Acid |
56 |
2598 |
|
|
|
|
M49914
|
Phalacrocoracidae Sequence data control region |
Control Region |
Nucleic Acid |
7 |
391 |
|
|
|
|
M15317
|
Triticum and Aegilops |
|
Nucleic Acid |
57 |
3190 |
|
|
|
|
M4779
|
Melinidinae gaps cpDNA |
Legacy TreeBASE Matrix ID = M5061 |
Nucleic Acid |
70 |
44 |
|
|
|
|
M14291
|
Locus_4.5b: Gene_NDST3 |
Autosomal gene |
Nucleic Acid |
72 |
958 |
|
|
|
|
M1077
|
Loo et al PRK RPB2.nex |
Legacy TreeBASE Matrix ID = M2587 |
Nucleic Acid |
117 |
1910 |
|
|
|
|
M1051
|
Combined data set |
Legacy TreeBASE Matrix ID = M2563 |
Nucleic Acid |
52 |
2963 |
|
|
|
|
M11024
|
cp matrix for ML |
trnL, trnLF, trnK/matK, rpl20-rps12 |
Nucleic Acid |
103 |
4174 |
|
|
|
|
M1272
|
Prosuberites ITS |
Legacy TreeBASE Matrix ID = M1933 |
Nucleic Acid |
39 |
915 |
|
|
|
|
M1046
|
Hoya Combined |
Legacy TreeBASE Matrix ID = M2559 |
Nucleic Acid |
44 |
2586 |
|
|
|
|
M14290
|
Locus 4.4: Gene_HMG-2 |
Autosomal gene |
Nucleic Acid |
72 |
790 |
|
|
|
|
M2282
|
COI |
Legacy TreeBASE Matrix ID = M847 |
Nucleic Acid |
22 |
1047 |
|
|
|
|
M2003
|
Combined |
Legacy TreeBASE Matrix ID = M3357 |
Nucleic Acid |
107 |
3528 |
|
|
|
|
M10260
|
ND2 Alignment |
|
Nucleic Acid |
19 |
591 |
|
|
|
|
M3858
|
COI and IGR |
Legacy TreeBASE Matrix ID = M4139 |
Nucleic Acid |
93 |
3787 |
|
|
|
|
M24953
|
Cichlids FIG S3 CONCAT subset1 garli |
|
Nucleic Acid |
45 |
5872 |
|
|
|
|
M13942
|
trnL-trnF, psbA-trnH, matK, rbcL, ITS, and 26S |
|
Nucleic Acid |
74 |
7137 |
|
|
|
|
M1933
|
28SNCOI |
Legacy TreeBASE Matrix ID = M3290 |
Nucleic Acid |
58 |
1141 |
|
|
|
|
M14289
|
Locus 3.3: Gene_Q6JLB2_CHICK |
Autosomal gene |
Nucleic Acid |
72 |
509 |
|
|
|
|
M3168
|
Nuclear Dataset |
Legacy TreeBASE Matrix ID = M3830 |
Nucleic Acid |
133 |
1520 |
|
|
|
|
M1471
|
Crown+Deep 41-taxon 18S rRNA |
Legacy TreeBASE Matrix ID = M2281 |
Nucleic Acid |
41 |
1818 |
|
|
|
|
M3574
|
COI |
Legacy TreeBASE Matrix ID = M837 |
Nucleic Acid |
27 |
600 |
|
|
|
|
M1273
|
Leucettidae ITS |
Legacy TreeBASE Matrix ID = M1934 |
Nucleic Acid |
20 |
900 |
|
|
|
|
M39917
|
Olfactory Marker Protein Gene Alignment |
Protein coding sequences for olfactory marker protein gene |
Nucleic Acid |
133 |
541 |
|
|
|
|
M1834
|
Ceroxyloideae |
Legacy TreeBASE Matrix ID = M3190 |
Nucleic Acid |
57 |
5569 |
|
|
|
|
M3280
|
COI Osborn Flotidae |
Legacy TreeBASE Matrix ID = M3948 |
Nucleic Acid |
17 |
681 |
|
|
|
|
M1038
|
SSU-ITS |
Legacy TreeBASE Matrix ID = M2551 |
Nucleic Acid |
18 |
1756 |
|
|
|
|
M3375
|
COI |
Legacy TreeBASE Matrix ID = M4186 |
Nucleic Acid |
12 |
858 |
|
|
|
|
M2902
|
Cytochrome b |
Legacy TreeBASE Matrix ID = M3470 |
Nucleic Acid |
255 |
1117 |
|
|
|
|
M14792
|
Character Matrix |
Rainbowfish phylogenetic data |
Nucleic Acid |
139 |
6827 |
|
|
|
|
M44393
|
Bottlenose Dolphins Concatenated Lactalbumin and Actin Sequences |
|
Nucleic Acid |
67 |
909 |
|
|
|
|
M4618
|
LEA-like low-copy nuclear locus |
Legacy TreeBASE Matrix ID = M4362 |
Nucleic Acid |
46 |
1630 |
|
|
|
|
M1991
|
Gammarus 28SrDNA |
Legacy TreeBASE Matrix ID = M3346 |
Nucleic Acid |
66 |
1397 |
|
|
|
|
M1057
|
ndhF data--Boraginales |
Legacy TreeBASE Matrix ID = M2569 |
Nucleic Acid |
47 |
2256 |
|
|
|
|
M4720
|
Phrynobatrachus Fig. 1S |
Legacy TreeBASE Matrix ID = M4961 |
Nucleic Acid |
218 |
2917 |
|
|
|
|
M14288
|
Locus 2.7: Gene_RAB12 |
Autosomal gene |
Nucleic Acid |
72 |
626 |
|
|
|
|
M3404
|
MtN21 |
Legacy TreeBASE Matrix ID = M4296 |
Nucleic Acid |
13 |
572 |
|
|
|
|
M1226
|
Fig. 2 |
Legacy TreeBASE Matrix ID = M2727 |
Nucleic Acid |
48 |
8004 |
|
|
|
|
M1061
|
preliminary data--rps16 |
Legacy TreeBASE Matrix ID = M2572 |
Nucleic Acid |
191 |
990 |
|
|
|
|
M11002
|
Cercis_plastid_ITS |
Four plastid genes and ITS |
Nucleic Acid |
33 |
6260 |
|
|
|
|
M3590
|
Anaxyrus boreas - 12S rDNA |
Legacy TreeBASE Matrix ID = M4157 |
Nucleic Acid |
15 |
890 |
|
|
|
|
M230
|
Symbiodinium cp23S rDNA ML |
Legacy TreeBASE Matrix ID = M1054 |
Nucleic Acid |
20 |
513 |
|
|
|
|
M1590
|
trnL-F ndhF F1 |
Legacy TreeBASE Matrix ID = M2438 |
Nucleic Acid |
39 |
2991 |
|
|
|
|
M35419
|
Xylariaceae Alpha actin intron1 recoded |
Xylaraiceae |
Unspecified |
367 |
129 |
|
|
|
|
M934
|
28S rRNA |
Legacy TreeBASE Matrix ID = M3025 |
Nucleic Acid |
87 |
1761 |
|
|
|
|
M11544
|
Chenopodium trnL-F |
|
Nucleic Acid |
141 |
1393 |
|
|
|
|
M24952
|
Cichlids FIG S1 CONCAT ALL mrbayes1 |
|
Nucleic Acid |
45 |
17545 |
|
|
|
|
M3591
|
Anaxyrus boreas - COI |
Legacy TreeBASE Matrix ID = M4158 |
Nucleic Acid |
18 |
394 |
|
|
|
|
M53521
|
Astraea ITS matrix |
|
Nucleic Acid |
69 |
591 |
|
|
|
|
M14297
|
Locus_TGFB2: Gene_TBFB2 |
Autosomal gene |
Nucleic Acid |
72 |
464 |
|
|
|
|
M6944
|
Ericoideae 6 loci |
|
|
44 |
7484 |
|
|
|
|
M51225
|
Chaetocerotaceae COI |
COI |
Nucleic Acid |
52 |
405 |
|
|
|
|
M44225
|
Ferns-part3 |
|
Nucleic Acid |
136 |
248342 |
|
|
|
|
M10432
|
Fig.2_16S |
16S 43 taxa; focus on Helicidae s.s. |
Nucleic Acid |
43 |
326 |
|
|
|
|
M4879
|
Halipeurus |
Legacy TreeBASE Matrix ID = M4969 |
Nucleic Acid |
21 |
693 |
|
|
|
|
M44381
|
Bottlenose Dolphins Actin Sequences |
|
Nucleic Acid |
67 |
432 |
|
|
|
|
M33726
|
Cnidopus Nuclear Matrix |
Only Nuclear loci |
Nucleic Acid |
75 |
6424 |
|
|
|
|
M1105
|
combined nuclear and mitochondrial data |
Legacy TreeBASE Matrix ID = M2611 |
Nucleic Acid |
22 |
7491 |
|
|
|
|
M1257
|
Gaps |
Legacy TreeBASE Matrix ID = M2755 |
Unspecified |
85 |
39 |
|
|
|
|
M47494
|
Leptochilus combination Zhang et al 2018 |
|
Nucleic Acid |
146 |
4629 |
|
|
|
|
M2999
|
AFLP Chionohebe |
Legacy TreeBASE Matrix ID = M3599 |
Restriction Site |
158 |
1126 |
|
|
|
|
M11163
|
28S rRNA |
|
|
21 |
786 |
|
|
|
|
M1133
|
Fig1B |
Legacy TreeBASE Matrix ID = M2640 |
Amino Acid |
18 |
243 |
|
|
|
|
M2610
|
12S |
Legacy TreeBASE Matrix ID = M2071 |
Nucleic Acid |
53 |
765 |
|
|
|
|
M109
|
Fig.2c, GAPDH |
Legacy TreeBASE Matrix ID = M1310 |
Nucleic Acid |
30 |
1026 |
|
|
|
|
M25010
|
FAD |
|
Nucleic Acid |
24 |
3652 |
|
|
|
|
M35420
|
Xylariaceae Alpha actin intron2 recoded |
Xylaraiceae |
Unspecified |
367 |
163 |
|
|
|
|
M35382
|
Hawaiian endemic mints chloroplast Genome 26 taxa alignment |
|
Nucleic Acid |
26 |
190972 |
|
|
|
|
M1885
|
Spermophilus Y Chromosome DNA |
Legacy TreeBASE Matrix ID = M3239 |
Nucleic Acid |
5 |
989 |
|
|
|
|
M49941
|
Polystichum rps4 27.6.2018 |
rps4 alignment |
Nucleic Acid |
50 |
1032 |
|
|
|
|
M1461
|
RAG1 |
Legacy TreeBASE Matrix ID = M2271 |
Nucleic Acid |
44 |
3053 |
|
|
|
|
M2118
|
SSU + LSU |
Legacy TreeBASE Matrix ID = M489 |
Nucleic Acid |
21 |
2513 |
|
|
|
|
M3488
|
Table 2 |
Legacy TreeBASE Matrix ID = M279 |
Restriction Site |
14 |
71 |
|
|
|
|
M11543
|
Chenopodium ITS indels |
|
Nucleic Acid |
141 |
79 |
|
|
|
|
M4320
|
Figure 1 |
Legacy TreeBASE Matrix ID = M4665 |
Nucleic Acid |
88 |
1595 |
|
|
|
|
M1989
|
Gammarus Combine |
Legacy TreeBASE Matrix ID = M3344 |
Nucleic Acid |
72 |
5139 |
|
|
|
|
M35416
|
Xylariaceae 5.8S alignment |
Xylariaceae |
Nucleic Acid |
367 |
158 |
|
|
|
|
M1785
|
24-gene data set |
Legacy TreeBASE Matrix ID = M3128 |
Nucleic Acid |
14 |
13503 |
|
|
|
|
M33899
|
Prenolepis CAD EF1 EF2 LCO LWR WNT |
|
Nucleic Acid |
135 |
3384 |
|
|
|
|
M5993
|
Combined ITS BT EF and RPB2 matrix |
Combined ITS BT EF and RPB2 sequence alignment for isolates from Neofusicoccum parvum/N. ribis species complex |
Nucleic Acid |
42 |
1813 |
|
|
|
|
M1990
|
Gammarus 18SrDNA |
Legacy TreeBASE Matrix ID = M3345 |
Nucleic Acid |
64 |
2064 |
|
|
|
|
M14296
|
Locus_MB: Gene_MB |
Autosomal gene |
Nucleic Acid |
72 |
637 |
|
|
|
|
M42938
|
Bonnetina and Related Tarantulas MRPL44 |
|
Nucleic Acid |
88 |
830 |
|
|
|
|
M33178
|
Vincetoxicum psbAtrnH |
|
Nucleic Acid |
140 |
645 |
|
|
|
|
M4900
|
Phrynobatrachus, Fig. 1 mtDNA |
Legacy TreeBASE Matrix ID = M4959 |
Nucleic Acid |
218 |
3094 |
|
|
|
|
M1062
|
ITS--preliminary data |
Legacy TreeBASE Matrix ID = M2573 |
Nucleic Acid |
346 |
897 |
|
|
|
|
M3020
|
combined |
Legacy TreeBASE Matrix ID = M3621 |
Nucleic Acid |
31 |
11531 |
|
|
|
|
M2117
|
SSU + LSU |
Legacy TreeBASE Matrix ID = M488 |
Nucleic Acid |
21 |
2557 |
|
|
|
|
M2145
|
Fig. 4 |
Legacy TreeBASE Matrix ID = M514 |
Nucleic Acid |
20 |
505 |
|
|
|
|
M4723
|
Myrmica Bayesian consensus |
Legacy TreeBASE Matrix ID = M5066 |
Nucleic Acid |
112 |
3886 |
|
|
|
|
M4767
|
LSU and SSU GBlock3 38 taxa F3 |
Legacy TreeBASE Matrix ID = M4972 |
Nucleic Acid |
38 |
3588 |
|
|
|
|
M36712
|
Hippocastaneae AT103 |
|
Nucleic Acid |
34 |
584 |
|
|
|
|
M12307
|
psbA |
psbA-trnH intergenic spacer |
Nucleic Acid |
86 |
564 |
|
|
|
|
M5988
|
ITS matrix |
ITS sequence alignment for isolates from Neofusicoccum parvum/N. ribis species complex |
Nucleic Acid |
42 |
520 |
|
|
|
|
M2115
|
SSU |
Legacy TreeBASE Matrix ID = M486 |
Nucleic Acid |
20 |
1795 |
|
|
|
|
M2134
|
|
Legacy TreeBASE Matrix ID = M504 |
Morphological |
29 |
16 |
|
|
|
|
M21679
|
Apodanthaceae matR 3 mar 2014 MAFFT edited |
|
Nucleic Acid |
26 |
1611 |
|
|
|
|
M2848
|
ND1-COI |
Legacy TreeBASE Matrix ID = M1999 |
Nucleic Acid |
21 |
1759 |
|
|
|
|
M1331
|
LSU |
Legacy TreeBASE Matrix ID = M2134 |
Nucleic Acid |
78 |
974 |
|
|
|
|
M935
|
28S rDNA-COI-CAD |
Legacy TreeBASE Matrix ID = M3026 |
Nucleic Acid |
89 |
3005 |
|
|
|
|
M8765
|
LTA C13 |
|
Nucleic Acid |
48 |
536 |
|
|
|
|
M1748
|
Fig. 2a |
Legacy TreeBASE Matrix ID = M3093 |
Nucleic Acid |
28 |
612 |
|
|
|
|
M23617
|
Montanelia six gene dataset |
|
Nucleic Acid |
69 |
4280 |
|
|
|
|
M930
|
Figure 1 |
Legacy TreeBASE Matrix ID = M3021 |
Nucleic Acid |
50 |
1348 |
|
|
|
|
M1258
|
IRBP, FES, RHO, CHRNA1, GHR |
Legacy TreeBASE Matrix ID = M2756 |
Nucleic Acid |
85 |
2935 |
|
|
|
|
M4842
|
SSU and LSU D5 to 3 end GBlock6 31 taxa F4 |
Legacy TreeBASE Matrix ID = M4971 |
Nucleic Acid |
31 |
2761 |
|
|
|
|
M10431
|
Fig.2_COI |
COI 39 taxa; focus on Helicidae s.s. |
Nucleic Acid |
39 |
526 |
|
|
|
|
M12846
|
Oribatid Mites 18S Data |
|
Nucleic Acid |
44 |
1991 |
|
|
|
|
M190
|
COI |
Legacy TreeBASE Matrix ID = M1014 |
Nucleic Acid |
60 |
1014 |
|
|
|
|
M785
|
Xylophilus 28S |
Legacy TreeBASE Matrix ID = M1715 |
Nucleic Acid |
11 |
729 |
|
|
|
|
M1937
|
Total Evidence |
Legacy TreeBASE Matrix ID = M3295 |
Unspecified |
21 |
3767 |
|
|
|
|
M5737
|
ITS Boraginaceae |
|
Nucleic Acid |
42 |
638 |
|
|
|
|
M4381
|
WD-40 low-copy nuclear locus |
Legacy TreeBASE Matrix ID = M4363 |
Nucleic Acid |
52 |
1182 |
|
|
|
|
M3152
|
ND4 NJ |
Legacy TreeBASE Matrix ID = M3798 |
Nucleic Acid |
41 |
579 |
|
|
|
|
M42936
|
Bonnetina and Related Tarantulas EF1G |
|
Nucleic Acid |
88 |
713 |
|
|
|
|
M4743
|
Total data set (12S + COI + allozymes) |
Legacy TreeBASE Matrix ID = M4920 |
Combination |
26 |
981 |
|
|
|
|
M3210
|
Blue sheep cytB |
Legacy TreeBASE Matrix ID = M3872 |
Nucleic Acid |
40 |
1140 |
|
|
|
|
M1964
|
All 5 Loci |
Legacy TreeBASE Matrix ID = M3319 |
Nucleic Acid |
23 |
3897 |
|
|
|
|
M37089
|
Rhizoplaca 7 genes 13 April 2013 reduced |
|
Nucleic Acid |
199 |
4348 |
|
|
|
|
M583
|
ITS1, 5.8S, ITS2, big |
Legacy TreeBASE Matrix ID = M1483 |
Nucleic Acid |
124 |
647 |
|
|
|
|
M2681
|
atp6 all fungi |
Legacy TreeBASE Matrix ID = M652 |
Nucleic Acid |
40 |
606 |
|
|
|
|
M11162
|
g3pdh gene |
|
|
36 |
675 |
|
|
|
|
M803
|
Pleistodontes 28S rDNA+Cytb |
Legacy TreeBASE Matrix ID = M955 |
Nucleic Acid |
18 |
1420 |
|
|
|
|
M14942
|
Strobilomyces atp6 cox3 |
Nucleotide sequences of the atp6 gene and cox3 gene |
Nucleic Acid |
22 |
1196 |
|
|
|
|
M37087
|
Rhizoplaca 7 genes 23 June 2015 MELA |
|
Nucleic Acid |
444 |
4351 |
|
|
|
|
M301
|
Fig. 1 |
Legacy TreeBASE Matrix ID = M1134 |
Nucleic Acid |
57 |
1701 |
|
|
|
|
M3785
|
Sand Lizard Combined |
Legacy TreeBASE Matrix ID = M3568 |
Nucleic Acid |
31 |
2871 |
|
|
|
|
M10467
|
Pristimantis Allgenes |
COI,16S,12S,Rag1,Tyr |
Nucleic Acid |
202 |
4074 |
|
|
|
|
M884
|
cpDNA-trnK-trnL |
Legacy TreeBASE Matrix ID = M2980 |
Nucleic Acid |
28 |
2983 |
|
|
|
|
M7024
|
Colubroidea |
5-Gene Matrix for Colubroids |
Nucleic Acid |
767 |
5814 |
|
|
|
|
M3936
|
COI DNA |
Legacy TreeBASE Matrix ID = M3468 |
Nucleic Acid |
43 |
1017 |
|
|
|
|
M15669
|
Histone H3 |
partial histone H3 |
Nucleic Acid |
73 |
267 |
|
|
|
|
M4433
|
McGowenetal nrDNA B |
Legacy TreeBASE Matrix ID = M4841 |
Nucleic Acid |
91 |
13402 |
|
|
|
|
M706
|
NeilliaLFYclones |
Legacy TreeBASE Matrix ID = M1614 |
Nucleic Acid |
36 |
1779 |
|
|
|
|
M11166
|
Aco1 gene |
|
|
37 |
850 |
|
|
|
|
M231
|
Symbiodinium cp23S rDNA MP |
Legacy TreeBASE Matrix ID = M1055 |
Nucleic Acid |
20 |
1006 |
|
|
|
|
M1131
|
Fig2A |
Legacy TreeBASE Matrix ID = M2639 |
Amino Acid |
19 |
331 |
|
|
|
|
M14355
|
Pseudoxiphophorus Combined |
cytb + atp6-8 + 16S + S7 + B-actin |
Nucleic Acid |
50 |
4278 |
|
|
|
|
M13320
|
COI DNA Alignment |
|
Nucleic Acid |
44 |
1218 |
|
|
|
|
M4789
|
linn all |
Legacy TreeBASE Matrix ID = M5014 |
Nucleic Acid |
51 |
4703 |
|
|
|
|
M5991
|
EF matrix |
EF sequence alignment for isolates from Neofusicoccum parvum/N. ribis species complex |
Nucleic Acid |
42 |
265 |
|
|
|
|
M2954
|
atpB, rbcL, trnL-F |
Legacy TreeBASE Matrix ID = M3527 |
Nucleic Acid |
71 |
3388 |
|
|
|
|
M18118
|
21 nuclear genes |
21 partitions, mr bayes |
Nucleic Acid |
38 |
12469 |
|
|
|
|
M1779
|
38-genes 2 |
Legacy TreeBASE Matrix ID = M3122 |
Nucleic Acid |
15 |
10000 |
|
|
|
|
M3018
|
coding |
Legacy TreeBASE Matrix ID = M3619 |
Nucleic Acid |
31 |
7005 |
|
|
|
|
M929
|
Eucalypt ITS |
Legacy TreeBASE Matrix ID = M3020 |
Nucleic Acid |
68 |
671 |
|
|
|
|
M1512
|
18S, co1, morphology |
Legacy TreeBASE Matrix ID = M2362 |
Combination |
18 |
2720 |
|
|
|
|
M35424
|
Xylariaceae Beta-tubulin intron5 recoded |
Xylaraiceae |
Unspecified |
367 |
177 |
|
|
|
|
M3150
|
cytb ML unique haplotypes |
Legacy TreeBASE Matrix ID = M3796 |
Nucleic Acid |
33 |
707 |
|
|
|
|
M1847
|
18S |
Legacy TreeBASE Matrix ID = M3201 |
Nucleic Acid |
33 |
1830 |
|
|
|
|
M13484
|
Mantos |
|
Nucleic Acid |
106 |
1308 |
|
|
|
|
M8983
|
Dasypodidae |
|
Nucleic Acid |
13 |
6968 |
|
|
|
|
M1994
|
Gammarus Combined |
Legacy TreeBASE Matrix ID = M3349 |
Nucleic Acid |
72 |
5139 |
|
|
|
|
M1225
|
Fig. 1 |
Legacy TreeBASE Matrix ID = M2726 |
Nucleic Acid |
49 |
1739 |
|
|
|
|
M9749
|
cpDNA |
atpB-rbcL + matK-trnK + rpoC1 |
Nucleic Acid |
54 |
5365 |
|
|
|
|
M40964
|
Holothuroidea Reduced Dataset Matrix |
|
Nucleic Acid |
84 |
4296 |
|
|
|
|
M1728
|
cyt b and 16S rRNA |
Legacy TreeBASE Matrix ID = M3070 |
Nucleic Acid |
76 |
1055 |
|
|
|
|
M189
|
COI-COII-EF |
Legacy TreeBASE Matrix ID = M1013 |
Nucleic Acid |
60 |
2996 |
|
|
|
|
M333
|
12s_16s rDNA |
Legacy TreeBASE Matrix ID = M1169 |
Nucleic Acid |
23 |
1945 |
|
|
|
|
M5970
|
189x3306 |
|
|
189 |
3306 |
|
|
|
|
M1129
|
Fig2C |
Legacy TreeBASE Matrix ID = M2637 |
Amino Acid |
19 |
380 |
|
|
|
|
M2830
|
|
Legacy TreeBASE Matrix ID = M778 |
Combination |
94 |
5113 |
|
|
|
|
M52683
|
Leptaxinae |
|
Nucleic Acid |
66 |
7428 |
|
|
|
|
M3153
|
cytb NJ |
Legacy TreeBASE Matrix ID = M3799 |
Nucleic Acid |
98 |
707 |
|
|
|
|
M3169
|
Mitochondrial Dataset |
Legacy TreeBASE Matrix ID = M3831 |
Nucleic Acid |
133 |
2842 |
|
|
|
|
M4387
|
Total Alignment |
Legacy TreeBASE Matrix ID = M4647 |
Nucleic Acid |
47 |
1658 |
|
|
|
|
M4694
|
5,216x35 |
Legacy TreeBASE Matrix ID = M4559 |
Amino Acid |
35 |
5216 |
|
|
|
|
M40965
|
Holothuroidea Complete Dataset |
|
Nucleic Acid |
84 |
5171 |
|
|
|
|
M1330
|
B-tub, LSU, RPB2 |
Legacy TreeBASE Matrix ID = M2133 |
Nucleic Acid |
79 |
3454 |
|
|
|
|
M21678
|
Apodanthaceae 18S 3 mar 2014 MAFFTsec edited |
|
Nucleic Acid |
28 |
1729 |
|
|
|
|
M24958
|
Cichlids FIG S3 CONCAT subset2 mrbayes |
|
Nucleic Acid |
45 |
5507 |
|
|
|
|
M6806
|
Character Matrix |
Combined morphological and molecular charcters (16S, 18S, 28S rRNA) |
Combination |
64 |
2939 |
|
|
|
|
M1344
|
18S rDNA |
Legacy TreeBASE Matrix ID = M2147 |
Nucleic Acid |
21 |
1635 |
|
|
|
|
M4418
|
ND2 ND4 Ak1 Bfib ODC |
Legacy TreeBASE Matrix ID = M4729 |
Nucleic Acid |
36 |
3525 |
|
|
|
|
M3697
|
16S |
Legacy TreeBASE Matrix ID = M825 |
Nucleic Acid |
16 |
432 |
|
|
|
|
M5235
|
New Character Matrix |
|
|
298 |
11810 |
|
|
|
|
M14302
|
Locus_31.46: Gene_FRAS1 |
Z-linked gene |
Nucleic Acid |
72 |
810 |
|
|
|
|
M4382
|
McGowenetal nrDNA A |
Legacy TreeBASE Matrix ID = M4840 |
Nucleic Acid |
91 |
15398 |
|
|
|
|
M24955
|
Cichlids FIG S3 CONCAT subset1 mrbayes |
|
Nucleic Acid |
45 |
5872 |
|
|
|
|
M15039
|
Pelican dataset |
Combined sequences |
Nucleic Acid |
19 |
4439 |
|
|
|
|
M3377
|
Wg |
Legacy TreeBASE Matrix ID = M4188 |
Nucleic Acid |
12 |
384 |
|
|
|
|
M24957
|
Cichlids FIG S3 CONCAT subset2 RAxML |
|
Nucleic Acid |
45 |
5507 |
|
|
|
|
M36887
|
Maianthemum ITS and five cpDNA sequences |
|
|
92 |
5236 |
|
|
|
|
M24949
|
Cichlids GapsAsBinary |
|
Nucleic Acid |
45 |
167 |
|
|
|
|
M2986
|
Sea anemone combined |
Legacy TreeBASE Matrix ID = M3578 |
Nucleic Acid |
49 |
8281 |
|
|
|
|
M1716
|
atpB-Aniso |
Legacy TreeBASE Matrix ID = M3057 |
Nucleic Acid |
46 |
1473 |
|
|
|
|
M4809
|
ETS g3pdh rpb2 trnLF DNA combined matrix |
Legacy TreeBASE Matrix ID = M4981 |
Nucleic Acid |
151 |
2457 |
|
|
|
|
M3927
|
atp6 + mtLSU |
Legacy TreeBASE Matrix ID = M653 |
Nucleic Acid |
26 |
933 |
|
|
|
|
M8766
|
LTA I21 |
|
Nucleic Acid |
71 |
1349 |
|
|
|
|
M2535
|
Cyphelloid25S+5.8S |
Legacy TreeBASE Matrix ID = M1903 |
Nucleic Acid |
38 |
1082 |
|
|
|
|
M1888
|
Cytochrome b |
Legacy TreeBASE Matrix ID = M3241 |
Nucleic Acid |
70 |
1140 |
|
|
|
|
M14304
|
Locus_50.99: Gene_UDP |
Z-linked gene |
Nucleic Acid |
72 |
698 |
|
|
|
|
M35431
|
Xylariaceae ITS2 rDNA recoded |
Xylariomycetidae |
Unspecified |
520 |
142 |
|
|
|
|
M51221
|
Chaetocerotaceae 18S-28S-rbcL-psbA-COI |
18S-28S-rbcL-psbA-COI |
Nucleic Acid |
100 |
5138 |
|
|
|
|
M5705
|
Indels |
Independantly-coded insertion/deletion events from the DNA matrix. Indels coded in Gapcoder using the simple gap coding method |
Nucleic Acid |
73 |
344 |
|
|
|
|
M180
|
4regions |
Legacy TreeBASE Matrix ID = M1001 |
Nucleic Acid |
93 |
3800 |
|
|
|
|
M16257
|
Pseudemys nuDNA |
|
Nucleic Acid |
86 |
6570 |
|
|
|
|
M3930
|
26S |
Legacy TreeBASE Matrix ID = M779 |
Nucleic Acid |
84 |
982 |
|
|
|
|
M23663
|
Guloninae-16340 |
|
Nucleic Acid |
11 |
16340 |
|
|
|
|
M3287
|
12S rRNA 393bp |
Legacy TreeBASE Matrix ID = M3955 |
Nucleic Acid |
18 |
393 |
|
|
|
|
M1781
|
62-genes 3 |
Legacy TreeBASE Matrix ID = M3124 |
Nucleic Acid |
14 |
10000 |
|
|
|
|
M2280
|
28S |
Legacy TreeBASE Matrix ID = M845 |
Nucleic Acid |
10 |
809 |
|
|
|
|
M3374
|
Combined |
Legacy TreeBASE Matrix ID = M4185 |
Nucleic Acid |
12 |
7256 |
|
|
|
|
M39087
|
Prionotinae mtDNA |
cytochrome b and cytochrome 1 |
Nucleic Acid |
58 |
1392 |
|
|
|
|
M3291
|
Arctotidinae cpDNA |
Legacy TreeBASE Matrix ID = M3959 |
Nucleic Acid |
92 |
2155 |
|
|
|
|
M1783
|
38-genes 1 |
Legacy TreeBASE Matrix ID = M3126 |
Nucleic Acid |
15 |
10000 |
|
|
|
|
M42941
|
Bonnetina and Related Tarantulas ITS-gaps |
gaps coded as characters |
Nucleic Acid |
88 |
284 |
|
|
|
|
M2490
|
Phytochrome A, B, C, E |
Legacy TreeBASE Matrix ID = M184c3x27x98c11c12c31 |
Nucleic Acid |
30 |
3264 |
|
|
|
|
M4940
|
GBlocked_Musc.nex |
Legacy TreeBASE Matrix ID = M4944 |
Nucleic Acid |
110 |
5422 |
|
|
|
|
M14354
|
Pseudoxiphophorus Cytb |
cytb |
Nucleic Acid |
101 |
1140 |
|
|
|
|
M784
|
Xylophilus COI |
Legacy TreeBASE Matrix ID = M1714 |
Nucleic Acid |
11 |
627 |
|
|
|
|
M3293
|
Arctotidinae ITS |
Legacy TreeBASE Matrix ID = M3961 |
Nucleic Acid |
93 |
688 |
|
|
|
|
M3362
|
mtDNA Concatenated |
Legacy TreeBASE Matrix ID = M4173 |
Nucleic Acid |
15 |
1380 |
|
|
|
|
M505
|
18S rRNA |
Legacy TreeBASE Matrix ID = M1386 |
Nucleic Acid |
13 |
1815 |
|
|
|
|
M932
|
18S rRNA |
Legacy TreeBASE Matrix ID = M3023 |
Nucleic Acid |
87 |
2353 |
|
|
|
|
M12807
|
Pezizomycotina: Xylonomycetes |
|
|
107 |
7259 |
|
|
|
|
M10433
|
Fig.3_16S |
16S 58 taxa; focus on Hygromiidae |
Nucleic Acid |
58 |
436 |
|
|
|
|
M5099
|
COI |
mtDNA |
Nucleic Acid |
103 |
658 |
|
|
|
|
M15667
|
28S rRNA |
28S ribosomal RNA region D1-D6 all positions |
Nucleic Acid |
73 |
1685 |
|
|
|
|
M49852
|
Pelargonium ITS alignment |
|
Nucleic Acid |
116 |
5972 |
|
|
|
|
M2355
|
LSU |
Legacy TreeBASE Matrix ID = M929 |
Nucleic Acid |
66 |
1360 |
|
|
|
|
M42940
|
Bonnetina and Related Tarantulas ITS1 |
|
Nucleic Acid |
88 |
868 |
|
|
|
|
M1072
|
rbcL atpB atpA rps4 |
Legacy TreeBASE Matrix ID = M2582 |
Nucleic Acid |
61 |
4940 |
|
|
|
|
M12306
|
NIAi3 |
third intron of the nuclear nitrate reductase gene |
Nucleic Acid |
84 |
679 |
|
|
|
|
M2728
|
vwf_cyb_12S_16S DNA |
Legacy TreeBASE Matrix ID = M2104 |
Nucleic Acid |
37 |
3669 |
|
|
|
|
M1128
|
Fig3 |
Legacy TreeBASE Matrix ID = M2636 |
Amino Acid |
20 |
1275 |
|
|
|
|
M4905
|
Allozyme data- alleles coded by presence or absence |
Legacy TreeBASE Matrix ID = M4922 |
Allozyme |
23 |
56 |
|
|
|
|
M2464
|
WAXY2 |
Legacy TreeBASE Matrix ID = M1824 |
Nucleic Acid |
44 |
785 |
|
|
|
|
M4366
|
6,048x35 |
Legacy TreeBASE Matrix ID = M4558 |
Amino Acid |
35 |
6048 |
|
|
|
|
M139
|
cytochrome b |
Legacy TreeBASE Matrix ID = M1630 |
Nucleic Acid |
169 |
1140 |
|
|
|
|
M11545
|
Chenopodium trnL-F Indels |
|
Nucleic Acid |
141 |
162 |
|
|
|
|
M35415
|
Xylariaceae Alpha-actin nucleotide alignment |
Xylariaceae |
Nucleic Acid |
367 |
130 |
|
|
|
|
M44354
|
Bottlenose Dolphins Combined Partial Miogenomes, Lactalbumin and Actin Sequences |
Combined Partial Miogenomes, Lactalbumin and Actin Sequences |
Nucleic Acid |
67 |
5565 |
|
|
|
|
M35421
|
Xylariaceae Beta-tubulin intron1 recoded |
Xylaraiceae |
Unspecified |
367 |
194 |
|
|
|
|
M3149
|
ND4 ML unique haplotypes |
Legacy TreeBASE Matrix ID = M3795 |
Nucleic Acid |
13 |
579 |
|
|
|
|
M1996
|
Gammarus 28SrDNA |
Legacy TreeBASE Matrix ID = M3350 |
Nucleic Acid |
66 |
1397 |
|
|
|
|
M3403
|
CHS gene |
Legacy TreeBASE Matrix ID = M4295 |
Nucleic Acid |
49 |
1167 |
|
|
|
|
M4800
|
LSU GBlock3 38 taxa F2B |
Legacy TreeBASE Matrix ID = M4973 |
Nucleic Acid |
38 |
2259 |
|
|
|
|
M2406
|
COII Protein |
Legacy TreeBASE Matrix ID = M1768 |
Amino Acid |
31 |
228 |
|
|
|
|
M1141
|
Pinus cpDNA alignment |
Legacy TreeBASE Matrix ID = M2650 |
Nucleic Acid |
92 |
3288 |
|
|
|
|
M2350
|
16S |
Legacy TreeBASE Matrix ID = M924 |
Nucleic Acid |
30 |
573 |
|
|
|
|
M10447
|
Xylosandrus 2nd Alignment |
|
Nucleic Acid |
47 |
3496 |
|
|
|
|
M35422
|
Xylariaceae Beta-tubulin intron2 recoded |
Xylaraiceae |
Unspecified |
367 |
146 |
|
|
|
|
M14305
|
Locus_69.74: Gene_DMXL1 |
Z-linked gene |
Nucleic Acid |
72 |
612 |
|
|
|
|
M5990
|
BT matrix |
BT sequence alignment for isolates from Neofusicoccum parvum/N. ribis species complex |
Nucleic Acid |
42 |
423 |
|
|
|
|
M47039
|
Euterpeae PhyB |
|
Nucleic Acid |
51 |
883 |
|
|
|
|
M9751
|
ITS Gaps |
coded gaps of the ITS data set |
Matrix Representation |
90 |
137 |
|
|
|
|
M1104
|
combined mitochondrial (Figure 1) |
Legacy TreeBASE Matrix ID = M2610 |
Nucleic Acid |
23 |
5276 |
|
|
|
|
M1322
|
Rana 12S rDNA tRNA val 16S rDNA |
Legacy TreeBASE Matrix ID = M2053 |
Nucleic Acid |
64 |
2014 |
|
|
|
|
M40120
|
Trichomycetes small rDNA |
|
Nucleic Acid |
101 |
5119 |
|
|
|
|
M4901
|
Figure2 mitochondrial |
Legacy TreeBASE Matrix ID = M5087 |
Nucleic Acid |
39 |
1508 |
|
|
|
|
M16058
|
Data PDG Triturus |
|
Nucleic Acid |
59 |
666 |
|
|
|
|
M1778
|
38-genes 3 |
Legacy TreeBASE Matrix ID = M3121 |
Nucleic Acid |
15 |
6604 |
|
|
|
|
M51069
|
Zoopagales Trophic Lifestyles |
|
Behavior |
46 |
1 |
|
|
|
|
M36676
|
Four gene matrix for Nicrophorinae 2 |
|
Nucleic Acid |
63 |
3971 |
|
|
|
|
M14294
|
Locus_9.2: Gene_ATG4B_CHICK |
Autosomal gene |
Nucleic Acid |
72 |
997 |
|
|
|
|
M33534
|
Caucasotachea Data file 2 |
|
Nucleic Acid |
92 |
655 |
|
|
|
|
M3573
|
cytb |
Legacy TreeBASE Matrix ID = M836 |
Nucleic Acid |
27 |
384 |
|
|
|
|
M2791
|
Act Btub MAT1-2 |
Legacy TreeBASE Matrix ID = M2347 |
Nucleic Acid |
7 |
2618 |
|
|
|
|
M2225
|
12S mtDNA |
Legacy TreeBASE Matrix ID = M604 |
Nucleic Acid |
7 |
256 |
|
|
|
|
M16059
|
Data ND4 Triturus |
|
Nucleic Acid |
85 |
658 |
|
|
|
|
M145
|
Table x |
Legacy TreeBASE Matrix ID = M170c6x22x97c14c48c20 |
Nucleic Acid |
9 |
728 |
|
|
|
|
M4414
|
ND2 |
Legacy TreeBASE Matrix ID = M3077 |
Nucleic Acid |
83 |
514 |
|
|
|
|
M24956
|
Cichlids FIG S3 CONCAT subset2 garli |
|
Nucleic Acid |
45 |
5507 |
|
|
|
|
M5572
|
Nerodia erythrogaster cytb nd2 cox1 |
|
Nucleic Acid |
161 |
2129 |
|
|
|
|
M1711
|
Simultaneous-Aniso |
Legacy TreeBASE Matrix ID = M3052 |
Nucleic Acid |
46 |
6431 |
|
|
|
|
M1719
|
Grues mtDNA |
Legacy TreeBASE Matrix ID = M3060 |
Nucleic Acid |
39 |
4102 |
|
|
|
|
M22612
|
Aponogetonaceae ITS1 ITS2 matK trnKi |
|
Nucleic Acid |
45 |
1746 |
|
|
|
|
M2348
|
COI |
Legacy TreeBASE Matrix ID = M922 |
Nucleic Acid |
30 |
1047 |
|
|
|
|
M35418
|
Xylariaceae ITS2 rDNA recoded |
Xylariaceae |
Unspecified |
367 |
116 |
|
|
|
|
M13338
|
Limnogonus |
|
Nucleic Acid |
55 |
2330 |
|
|
|
|
M7380
|
Rhizoplaca melanophthalma species complex |
ITS, IGS, group I intron, beta-tubulin, mcm7 |
Nucleic Acid |
153 |
2639 |
|
|
|
|
M2120
|
rDNA + Morph |
Legacy TreeBASE Matrix ID = M490 |
Combination |
20 |
2578 |
|
|
|
|
M3472
|
MAT1-2_HMG |
Legacy TreeBASE Matrix ID = M2343 |
Nucleic Acid |
41 |
1087 |
|
|
|
|
M53520
|
Astraea Plastid |
|
Nucleic Acid |
69 |
1461 |
|
|
|
|
M787
|
Combined |
Legacy TreeBASE Matrix ID = M1717 |
Nucleic Acid |
27 |
2889 |
|
|
|
|
M10184
|
Bufo bufo species group combo nuclear plus mtDNA |
Bufo bufo species group combo nuclear plus mtDNA |
Nucleic Acid |
39 |
3490 |
|
|
|
|
M4921
|
Polytrichopsida |
Legacy TreeBASE Matrix ID = M5008 |
Nucleic Acid |
120 |
6414 |
|
|
|
|
M33175
|
Vincetoxicum trnL |
|
Nucleic Acid |
140 |
932 |
|
|
|
|
M14306
|
Locus_73.07: Gene_ZNF608 |
Z-linked gene |
Nucleic Acid |
72 |
853 |
|
|
|
|
M3144
|
EF1 ML unique haplotypes |
Legacy TreeBASE Matrix ID = M3790 |
Nucleic Acid |
11 |
536 |
|
|
|
|
M782
|
Sexdentati COI |
Legacy TreeBASE Matrix ID = M1712 |
Nucleic Acid |
5 |
627 |
|
|
|
|
M4191
|
ITS + cpDNA |
Legacy TreeBASE Matrix ID = M4434 |
Combination |
110 |
3220 |
|
|
|
|
M4367
|
c-mos |
Legacy TreeBASE Matrix ID = M3075 |
Nucleic Acid |
83 |
549 |
|
|
|
|
M23894
|
Entos 159x3662 |
|
|
159 |
3662 |
|
|
|
|
M12721
|
8 plastid all |
|
|
116 |
9305 |
|
|
|
|
M14380
|
Hypericum ITS+clones alignment |
|
Nucleic Acid |
416 |
771 |
|
|
|
|
M2906
|
RAG1 ND2 PDC ND4 |
Legacy TreeBASE Matrix ID = M3474 |
Nucleic Acid |
26 |
3363 |
|
|
|
|
M6314
|
Rafflesiaceae |
|
Nucleic Acid |
29 |
6572 |
|
|
|
|
M2734
|
MAT1-2 AA 2 |
Legacy TreeBASE Matrix ID = M2344 |
Amino Acid |
7 |
232 |
|
|
|
|
M24950
|
Cichlids Fig S1 CONCAT ALL GARLI |
|
Nucleic Acid |
45 |
17545 |
|
|
|
|
M10314
|
Thryothorus Wrens cytb FGB-I4 |
|
Nucleic Acid |
67 |
1883 |
|
|
|
|
M21615
|
L Blocks |
unmasked proteins of the large ribosomal subunit |
Amino Acid |
25 |
25373 |
|
|
|
|
M1587
|
ndhF trnL-F ITS F4 |
Legacy TreeBASE Matrix ID = M2435 |
Nucleic Acid |
30 |
3471 |
|
|
|
|
M33177
|
Vincetoxicum trnTL |
|
Nucleic Acid |
140 |
1004 |
|
|
|
|
M2968
|
Figure1_CytB_NADH1_S7 |
Legacy TreeBASE Matrix ID = M3545 |
Nucleic Acid |
27 |
1822 |
|
|
|
|
M44182
|
Placental Mammals MC5R |
MC5R coding sequences |
Nucleic Acid |
115 |
1033 |
|
|
|
|
M12777
|
COII tRNA-Lys ATPase |
|
Nucleic Acid |
50 |
1010 |
|
|
|
|
M14293
|
Locus_6.1b: Gene_RasGEF1A |
Autosomal gene |
Nucleic Acid |
72 |
722 |
|
|
|
|
M33725
|
Cnidopus Mitochondrial matrix |
Only mitochondrial loci |
Nucleic Acid |
75 |
2046 |
|
|
|
|
M14763
|
Poecilia sphenops species complex ATPn90 |
|
Nucleic Acid |
90 |
852 |
|
|
|
|
M31126
|
Monilophytes, 9 gene data set |
Concatenated alignment of 5 chloroplast and 4 mitochondrial loci |
Nucleic Acid |
40 |
23666 |
|
|
|
|
M35413
|
Xylariaceae RPB2 nucleotide alignment |
Xylariaceae |
Nucleic Acid |
367 |
1026 |
|
|
|
|
M786
|
18S |
Legacy TreeBASE Matrix ID = M1716 |
Nucleic Acid |
27 |
1741 |
|
|
|
|
M13318
|
ALG11 DNA Alignment |
|
Nucleic Acid |
44 |
1119 |
|
|
|
|
M4186
|
ispG 542x25 |
Legacy TreeBASE Matrix ID = M4556 |
Nucleic Acid |
25 |
542 |
|
|
|
|
M4267
|
McGowenetal mtDNA |
Legacy TreeBASE Matrix ID = M4842 |
Nucleic Acid |
91 |
13535 |
|
|
|
|
M4798
|
Phrynobatrachus Fig. 2S |
Legacy TreeBASE Matrix ID = M4960 |
Nucleic Acid |
210 |
921 |
|
|
|
|
M2347
|
ND1 |
Legacy TreeBASE Matrix ID = M921 |
Nucleic Acid |
30 |
414 |
|
|
|
|
M400
|
12s and 16s rDNA |
Legacy TreeBASE Matrix ID = M1252 |
Nucleic Acid |
39 |
2066 |
|
|
|
|
M1457
|
AP5 extended taxon set |
Legacy TreeBASE Matrix ID = M2267 |
Nucleic Acid |
66 |
475 |
|
|
|
|
M14845
|
16S |
16S_alignment_Pectinidae |
Nucleic Acid |
22 |
665 |
|
|
|
|
M3928
|
atp6 |
Legacy TreeBASE Matrix ID = M654 |
Nucleic Acid |
31 |
639 |
|
|
|
|
M42935
|
Bonnetina and Related Tarantulas COI |
|
Nucleic Acid |
88 |
963 |
|
|
|
|
M4941
|
Cytb |
Legacy TreeBASE Matrix ID = M4968 |
Unspecified |
39 |
1143 |
|
|
|
|
M1679
|
Thamnophis trimmed NDS |
Legacy TreeBASE Matrix ID = M2922 |
Nucleic Acid |
77 |
1101 |
|
|
|
|
M3289
|
Control Region |
Legacy TreeBASE Matrix ID = M3957 |
Nucleic Acid |
7 |
956 |
|
|
|
|
M30075
|
Nylanderia Nuclear Phylogeny |
|
Nucleic Acid |
99 |
3715 |
|
|
|
|
M2656
|
ITS2 |
Legacy TreeBASE Matrix ID = M2072 |
Nucleic Acid |
53 |
655 |
|
|
|
|
M3283
|
16S Flotidae |
Legacy TreeBASE Matrix ID = M3951 |
Nucleic Acid |
18 |
568 |
|
|
|
|
M15760
|
Phyteuma |
|
Nucleic Acid |
116 |
4274 |
|
|
|
|
M24342
|
Wood-decaying fungi Multi-gene |
|
Nucleic Acid |
59 |
2697 |
|
|
|
|
M444
|
Fig2b, ITS |
Legacy TreeBASE Matrix ID = M1307 |
Nucleic Acid |
30 |
573 |
|
|
|
|
M10183
|
Bufo bufo species group nuclear DNA matrix |
Bufo bufo species group nuclear DNA matrix |
Nucleic Acid |
40 |
2251 |
|
|
|
|
M32309
|
Althenia matKndhFrbcLrpoBrpoC1phyC_MP |
matKndhFrbcLrpoBrpoC1phyC_MP |
Nucleic Acid |
14 |
4439 |
|
|
|
|
M13583
|
Betaeus 16S after GBLOCKS |
|
Nucleic Acid |
16 |
509 |
|
|
|
|
M36140
|
Chloridoid grasses125 genes |
|
Nucleic Acid |
50 |
106837 |
|
|
|
|
M2116
|
SSU |
Legacy TreeBASE Matrix ID = M487 |
Nucleic Acid |
20 |
1764 |
|
|
|
|
M5116
|
Matrix in file "Micropsectra_molecular.nex" |
COI, COII, 16s, CAD1 |
Nucleic Acid |
74 |
2701 |
|
|
|
|
M3361
|
nDNA Concatenated |
Legacy TreeBASE Matrix ID = M4172 |
Nucleic Acid |
15 |
2904 |
|
|
|
|
M24340
|
Wood-decaying fungi D1D2_multi |
|
Nucleic Acid |
59 |
528 |
|
|
|
|
M3173
|
Hypocreales |
Legacy TreeBASE Matrix ID = M3835 |
Nucleic Acid |
148 |
4936 |
|
|
|
|
M40351
|
Sticta 3-loci (mtSSU, nuLSU, RPB1) |
Combined 3-loci matrix |
Nucleic Acid |
220 |
2906 |
|
|
|
|
M10252
|
BEAST Dating Analysis Alignment |
|
Nucleic Acid |
19 |
831 |
|
|
|
|
M885
|
Morph_data |
Legacy TreeBASE Matrix ID = M2981 |
Morphological |
35 |
42 |
|
|
|
|
M1010
|
combined |
Legacy TreeBASE Matrix ID = M2516 |
Nucleic Acid |
145 |
1889 |
|
|
|
|
M1713
|
ndhF-Aniso |
Legacy TreeBASE Matrix ID = M3054 |
Nucleic Acid |
45 |
646 |
|
|
|
|
M12720
|
GBSSI |
|
|
178 |
1426 |
|
|
|
|
M2235
|
12S |
Legacy TreeBASE Matrix ID = M616 |
Nucleic Acid |
23 |
332 |
|
|
|
|
M10250
|
RAG-1 Alignment |
|
Nucleic Acid |
19 |
591 |
|
|
|
|
M4347
|
Fig. 4 Barnadesioideae |
Legacy TreeBASE Matrix ID = M4379 |
Nucleic Acid |
17 |
2320 |
|
|
|
|
M1039
|
plastid concatenated |
Legacy TreeBASE Matrix ID = M2552 |
Nucleic Acid |
18 |
2250 |
|
|
|
|
M1745
|
Fig. 1a |
Legacy TreeBASE Matrix ID = M3090 |
Nucleic Acid |
57 |
493 |
|
|
|
|
M51222
|
Chaetocerotaceae 18S-28S |
18S-28S |
Nucleic Acid |
97 |
2495 |
|
|
|
|
M36714
|
Hippocastaneae ycf1 |
|
Nucleic Acid |
30 |
816 |
|
|
|
|
M2855
|
COI |
Legacy TreeBASE Matrix ID = M2069 |
Nucleic Acid |
53 |
658 |
|
|
|
|
M12835
|
Figure 2 Matrix |
|
Nucleic Acid |
80 |
3368 |
|
|
|
|
M4561
|
fabl 291x32 |
Legacy TreeBASE Matrix ID = M4557 |
Amino Acid |
32 |
291 |
|
|
|
|
M20141
|
OCM1 DNA exc3 |
|
Nucleic Acid |
97 |
2148 |
|
|
|
|
M44234
|
Ferns-part4 |
|
Nucleic Acid |
136 |
217572 |
|
|
|
|
M1588
|
ITS F4 |
Legacy TreeBASE Matrix ID = M2436 |
Nucleic Acid |
45 |
503 |
|
|
|
|
M192
|
EF-1a |
Legacy TreeBASE Matrix ID = M1016 |
Nucleic Acid |
60 |
939 |
|
|
|
|
M2265
|
ITS2 with P2-6 |
Legacy TreeBASE Matrix ID = M759 |
Nucleic Acid |
11 |
171 |
|
|
|
|
M1860
|
ND2 Lacertids |
Legacy TreeBASE Matrix ID = M3213 |
Nucleic Acid |
58 |
602 |
|
|
|
|
M3376
|
H3 |
Legacy TreeBASE Matrix ID = M4187 |
Nucleic Acid |
12 |
327 |
|
|
|
|
M1712
|
rbcL-Aniso |
Legacy TreeBASE Matrix ID = M3053 |
Nucleic Acid |
46 |
1508 |
|
|
|
|
M3292
|
Arctotidinae totalDNA |
Legacy TreeBASE Matrix ID = M3960 |
Nucleic Acid |
93 |
2926 |
|
|
|
|
M49460
|
Pelargonium S8a Supplementary File PIE |
|
Nucleic Acid |
139 |
64388 |
|
|
|
|
M4731
|
12S and 16S rRNA for ranids |
Legacy TreeBASE Matrix ID = M4939 |
Nucleic Acid |
56 |
1338 |
|
|
|
|
M3395
|
Dacus COI 16S per |
Legacy TreeBASE Matrix ID = M4287 |
Nucleic Acid |
74 |
1770 |
|
|
|
|
M1940
|
18S |
Legacy TreeBASE Matrix ID = M3298 |
Unspecified |
21 |
1767 |
|
|
|
|
M52447
|
Orchidaceae 76sp 38mt |
|
Nucleic Acid |
76 |
33867 |
|
|
|
|
M4860
|
Riboprotein super-alignment, 62 Taxa |
Legacy TreeBASE Matrix ID = M4937 |
Amino Acid |
62 |
11544 |
|
|
|
|
M36713
|
Hippocastaneae SQD1 |
|
Nucleic Acid |
33 |
258 |
|
|
|
|
M32312
|
Althenia matkndhfrbclrpobrpoc1_Bayes |
matkndhfrbclrpobrpoc1_Bayes |
Nucleic Acid |
14 |
3776 |
|
|
|
|
M3909
|
Concatenated |
Legacy TreeBASE Matrix ID = M4255 |
Nucleic Acid |
61 |
5588 |
|
|
|
|
M12303
|
ETS |
External Transcribed Spacer |
Nucleic Acid |
86 |
389 |
|
|
|
|
M3147
|
EF1 NJ |
Legacy TreeBASE Matrix ID = M3793 |
Nucleic Acid |
41 |
536 |
|
|
|
|
M1041
|
ITS |
Legacy TreeBASE Matrix ID = M2554 |
Nucleic Acid |
60 |
528 |
|
|
|
|
M19806
|
Pythons, 11 genes |
|
Nucleic Acid |
118 |
8531 |
|
|
|
|
M16258
|
Pseudemys mtDNA |
|
Nucleic Acid |
86 |
2209 |
|
|
|
|
M3154
|
COI NJ |
Legacy TreeBASE Matrix ID = M3800 |
Nucleic Acid |
170 |
879 |
|
|
|
|
M5239
|
Pheidole 5 gene matrix |
12S, cox1, cytb, H3, LR |
Nucleic Acid |
171 |
2738 |
|
|
|
|
M3594
|
Anaxyrus boreas - Restriction Sites, Control Region, COI |
Legacy TreeBASE Matrix ID = M4161 |
Combination |
19 |
2216 |
|
|
|
|
M3145
|
18S ML unique haplotypes |
Legacy TreeBASE Matrix ID = M3791 |
Nucleic Acid |
24 |
2283 |
|
|
|
|
M24339
|
Wood-decaying fungi D1D2_all |
|
Nucleic Acid |
225 |
526 |
|
|
|
|
M764
|
cytb, R35 and 12S |
Legacy TreeBASE Matrix ID = M1693 |
Nucleic Acid |
80 |
2243 |
|
|
|
|
M35434
|
Xylariaceae beta-tubulin intron4 recoded |
Xylariomycetidae |
Unspecified |
520 |
199 |
|
|
|
|
M46809
|
Candidula Ribosomal |
|
Nucleic Acid |
62 |
1476 |
|
|
|
|
M2498
|
Phytochrome A, C |
Legacy TreeBASE Matrix ID = M185c3x27x98c11c16c06 |
Nucleic Acid |
29 |
1008 |
|
|
|
|
M6301
|
Combined |
A combined dataset of mitochondrial genomes and eight nuclear genes |
Nucleic Acid |
26 |
9133 |
|
|
|
|
M2295
|
ATPase 8, ATPase 6, and 12S |
Legacy TreeBASE Matrix ID = M861 |
Nucleic Acid |
24 |
1141 |
|
|
|
|
M25013
|
Helveticum |
|
Nucleic Acid |
14 |
3333 |
|
|
|
|
M802
|
Pleistodontes 28S rDNA+ITS2 |
Legacy TreeBASE Matrix ID = M954 |
Nucleic Acid |
20 |
1434 |
|
|
|
|
M3281
|
28S Osborn Flotidae |
Legacy TreeBASE Matrix ID = M3949 |
Nucleic Acid |
18 |
1289 |
|
|
|
|
M35426
|
Xylariaceae RPB2 |
Xylariomycetidae |
Nucleic Acid |
520 |
999 |
|
|
|
|
M11025
|
nc matrix for ML |
phyC |
Nucleic Acid |
98 |
1067 |
|
|
|
|
M1747
|
Fig. 2b |
Legacy TreeBASE Matrix ID = M3092 |
Nucleic Acid |
31 |
379 |
|
|
|
|
M1935
|
28SN |
Legacy TreeBASE Matrix ID = M3292 |
Nucleic Acid |
58 |
538 |
|
|
|
|
M4814
|
Combined mtDNA (12S and COI) data set |
Legacy TreeBASE Matrix ID = M4921 |
Nucleic Acid |
26 |
925 |
|
|
|
|
M14295
|
Locus_IRF: Gene_IRF2 |
Autosomal gene |
Nucleic Acid |
72 |
623 |
|
|
|
|
M11134
|
6 non-coding regions of the pt genome |
|
Nucleic Acid |
26 |
3655 |
|
|
|
|
M3699
|
COI |
Legacy TreeBASE Matrix ID = M827 |
Nucleic Acid |
16 |
658 |
|
|
|
|
M33180
|
Vincetoxicum 5 8s |
|
Nucleic Acid |
140 |
176 |
|
|
|
|
M1934
|
COI |
Legacy TreeBASE Matrix ID = M3291 |
Nucleic Acid |
55 |
603 |
|
|
|
|
M3360
|
all DNA Concatenated |
Legacy TreeBASE Matrix ID = M4171 |
Nucleic Acid |
15 |
4284 |
|
|
|
|
M12834
|
Figure 1 Matrix |
|
Nucleic Acid |
91 |
555 |
|
|
|
|
M7166
|
Asiloidea CAD 28S |
|
Nucleic Acid |
50 |
3517 |
|
|
|
|
M2589
|
COI |
Legacy TreeBASE Matrix ID = M680 |
Nucleic Acid |
12 |
532 |
|
|
|
|
M33181
|
Vincetoxicum ITS2 |
|
Nucleic Acid |
140 |
284 |
|
|
|
|
M4621
|
BDNF, PNN, R35, and RAG-1 nuclear genes |
Legacy TreeBASE Matrix ID = M4656 |
Nucleic Acid |
56 |
3320 |
|
|
|
|
M7805
|
Philippine slender skinks |
|
|
108 |
5885 |
|
|
|
|
M3639
|
ITS |
Legacy TreeBASE Matrix ID = M703 |
Nucleic Acid |
37 |
1499 |
|
|
|
|
M13373
|
Antilopini All Genes |
cytb, coxiii, 12S, 16S, MC1R, KCAS, SPTBN1, PRKCI, THYR |
Nucleic Acid |
40 |
8167 |
|
|
|
|
M3593
|
Anaxyrus boreas - Control Region |
Legacy TreeBASE Matrix ID = M4160 |
Nucleic Acid |
59 |
882 |
|
|
|
|
M1511
|
18S and 28S Clustal |
Legacy TreeBASE Matrix ID = M2361 |
Nucleic Acid |
30 |
4644 |
|
|
|
|
M1458
|
AP5 |
Legacy TreeBASE Matrix ID = M2268 |
Nucleic Acid |
37 |
446 |
|
|
|
|
M980
|
nrDNA ITS & cpDNA trnL intron |
Legacy TreeBASE Matrix ID = M2475 |
Nucleic Acid |
257 |
1611 |
|
|
|
|
M14287
|
Locus 2.3: Gene_MPP6 |
Autosomal gene |
Nucleic Acid |
72 |
640 |
|
|
|
|
M424
|
trnL-trnF & rps4 |
Legacy TreeBASE Matrix ID = M1278 |
Nucleic Acid |
86 |
1368 |
|
|
|
|
M2281
|
Appendix I |
Legacy TreeBASE Matrix ID = M846 |
Morphological |
12 |
13 |
|
|
|
|
M739
|
mtDNA cyt b 12S |
Legacy TreeBASE Matrix ID = M1654 |
Nucleic Acid |
18 |
3347 |
|
|
|
Studies
Matrices
Trees
Taxa
Tree Topologies
Note: the matrix records below are the ones associated with the study records from your previous tab.
