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This study is part of submission (Status: ).
Analyses
Analysis 1
Analysis details
Name
Input data
9 Input object(s)
Vincetoxicum 5 8s
Vincetoxicum ETS
Vincetoxicum ITS1
Vincetoxicum ITS2
Vincetoxicum psbAtrnH
Vincetoxicum trnG
Vincetoxicum trnL
Vincetoxicum trnLF
Vincetoxicum trnTL
Analysis step
Maximum likelihood best tree --
Step details
Name
Software used
Name
Version
Algorithm
--- Please Select ---
maximum likelihood
parsimony
bayesian inference
minimum evolution
neighbor joining
UPGMA
other algorithm
Commands
geneticcode = standard linkmodels = 0 subsetspecificrates = 1 [trnG: JC] datatype = nucleotide ratematrix = 1rate statefrequencies = equal ratehetmodel = none numratecats = 1 invariantsites = none [trnL: TIM3+G] datatype = nucleotide ratematrix = (0 1 2 0 3 2) statefrequencies = estimate ratehetmodel = gamma numratecats = 4 invariantsites = none [trnL-F: TIM2] datatype = nucleotide ratematrix = (0 1 0 2 3 2) statefrequencies = estimate ratehetmodel = none numratecats = 1 invariantsites = none [trnT-L:TVM+G ] datatype = nucleotide ratematrix = (0 1 2 3 1 4) statefrequencies = estimate ratehetmodel = gamma numratecats = 4 invariantsites = none [psbA-trnH: TIM1+I+G] datatype = nucleotide ratematrix = (0 1 2 2 1 0) statefrequencies = estimate ratehetmodel = gamma numratecats = 4 invariantsites = estimate [ITS1: TVMef+G] datatype = nucleotide ratematrix = (0 1 2 3 1 4) statefrequencies = equal ratehetmodel = gamma numratecats = 4 invariantsites = none [5.8s: JC] datatype = nucleotide ratematrix = 1rate statefrequencies = equal ratehetmodel = none numratecats = 1 invariantsites = none [ITS2: HKY+I+G] datatype = nucleotide ratematrix = 2rate statefrequencies = estimate ratehetmodel = gamma numratecats = 4 invariantsites = estimate [ETS: TIM2+G] datatype = nucleotide ratematrix = (0 1 0 2 3 2) statefrequencies = estimate ratehetmodel = gamma numratecats = 4 invariantsites = none
Output data
1 Output object(s)
MLT
Input data
9 Input object(s)
Vincetoxicum 5 8s
Vincetoxicum ETS
Vincetoxicum ITS1
Vincetoxicum ITS2
Vincetoxicum psbAtrnH
Vincetoxicum trnG
Vincetoxicum trnL
Vincetoxicum trnLF
Vincetoxicum trnTL
Analysis step
Maximum likelihood bootstrap --
Step details
Name
Notes
Software used
Name
Version
Algorithm
--- Please Select ---
maximum likelihood
parsimony
bayesian inference
minimum evolution
neighbor joining
UPGMA
other algorithm
Commands
geneticcode = standard linkmodels = 0 subsetspecificrates = 1 [trnG: JC] datatype = nucleotide ratematrix = 1rate statefrequencies = equal ratehetmodel = none numratecats = 1 invariantsites = none [trnL: TIM3+G] datatype = nucleotide ratematrix = (0 1 2 0 3 2) statefrequencies = estimate ratehetmodel = gamma numratecats = 4 invariantsites = none [trnL-F: TIM2] datatype = nucleotide ratematrix = (0 1 0 2 3 2) statefrequencies = estimate ratehetmodel = none numratecats = 1 invariantsites = none [trnT-L:TVM+G ] datatype = nucleotide ratematrix = (0 1 2 3 1 4) statefrequencies = estimate ratehetmodel = gamma numratecats = 4 invariantsites = none [psbA-trnH: TIM1+I+G] datatype = nucleotide ratematrix = (0 1 2 2 1 0) statefrequencies = estimate ratehetmodel = gamma numratecats = 4 invariantsites = estimate [ITS1: TVMef+G] datatype = nucleotide ratematrix = (0 1 2 3 1 4) statefrequencies = equal ratehetmodel = gamma numratecats = 4 invariantsites = none [5.8s: JC] datatype = nucleotide ratematrix = 1rate statefrequencies = equal ratehetmodel = none numratecats = 1 invariantsites = none [ITS2: HKY+I+G] datatype = nucleotide ratematrix = 2rate statefrequencies = estimate ratehetmodel = gamma numratecats = 4 invariantsites = estimate [ETS: TIM2+G] datatype = nucleotide ratematrix = (0 1 0 2 3 2) statefrequencies = estimate ratehetmodel = gamma numratecats = 4 invariantsites = none
Output data
1 Output object(s)
ML bootstrap consensus
Analysis 2
Analysis details
Name
Input data
9 Input object(s)
Vincetoxicum 5 8s
Vincetoxicum ETS
Vincetoxicum ITS1
Vincetoxicum ITS2
Vincetoxicum psbAtrnH
Vincetoxicum trnG
Vincetoxicum trnL
Vincetoxicum trnLF
Vincetoxicum trnTL
Analysis step
Bayesian Inference --
Step details
Name
Software used
Name
Version
Algorithm
--- Please Select ---
maximum likelihood
parsimony
bayesian inference
minimum evolution
neighbor joining
UPGMA
other algorithm
Output data
1 Output object(s)
Bayesian Majority rule