@ARTICLE{TreeBASE2Ref16322,
author = {Rachel A. Levin and Nicole R. Myers and Lynn Bohs},
title = {Evolutionary relationships among the "spiny solanums" (Solanum subgenus Leptostemonum)},
year = {2006},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {American Journal of Botany},
volume = {93},
number = {},
pages = {157--169},
abstract = {Species of Solanum subgenus Leptostemonum comprise almost one third of the genus and are distributed worldwide. Members of this group are defined by their sharp epidermal prickles, thus being commonly referred to as the spiny solanums. This subgenus includes a number of economically important species such as the Old World eggplants, as well as locally cultivated New World species such as the naranjilla and cocona. Given the size and importance of this group we have examined phylogenetic relationships across subgenus Leptostemonum, including a large sampling of species from previously defined species groups within the subgenus. Evolutionary relationships were inferred using DNA sequence data from two nuclear regions [ITS and the granule-bound starch synthase gene (GBSSI or waxy)] and one chloroplast spacer region (trnS-trnG). Results suggest that Solanum subgenus Leptostemonum is monophyletic when the S. wendlandii and S. nemorense species groups are excluded. We have defined 10 well supported clades within subgenus Leptostemonum, some of which correspond to previously circumscribed species groups or sections. Most of the Old World species of subgenus Leptostemonum belong to a single species-rich clade. Spines and/or stellate hairs evolved more than once in Solanum, and floral heterandry originated multiple times within the spiny solanums.}
}
Analyses for Study 1391
Citation title:
"Evolutionary relationships among the "spiny solanums" (Solanum subgenus Leptostemonum)" .
This study was previously identified under the legacy study ID S1322
(Status: Published).
Analyses
Analysis 1
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Input data
1 Input object(s)
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1 Output object(s)
Fusarium solani ITS MLT
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1 Input object(s)
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1 Output object(s)
Fusarium solani - RPB2.5-7 ML Tree
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1 Output object(s)
Fusarium solani - RPB2.7-11 ML Tree
Analysis 4
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1 Input object(s)
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1 Output object(s)
Fusarium solani - TEF ML Tree
Analysis 5
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1 Input object(s)
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1 Output object(s)
Gliocladiopsis - ITS MLT
Analysis 6
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1 Input object(s)
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1 Output object(s)
Gliocladiopsis - RPB1 ML Tree
Analysis 7
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1 Input object(s)
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1 Output object(s)
Gliocladiopsis - TEF ML Tree
Analysis 8
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1 Input object(s)
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1 Output object(s)
Xylaria "PO" - ITS ML Tree
Analysis 9
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1 Input object(s)
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1 Output object(s)
Xylaria "HY" - ITS ML Tree
Analysis 10
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1 Input object(s)
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Hypoxylon ITS ML Tree
Analysis 11
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1 Input object(s)
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Entonaema - ITS ML Tree
Analysis 12
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1 Input object(s)
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1 Output object(s)
Nemania - ITS ML Tree
Analysis 13
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1 Input object(s)
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1 Output object(s)
Fusarium solani - MLSA ML Tree
Analysis 14
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1 Input object(s)
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1 Output object(s)
Gliocladiopsis - MLSA ML Tree
Analysis 15
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1 Input object(s)
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Allantonectria - ITS ML Tree
Analysis 16
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1 Input object(s)
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Bionectria - ITS ML Tree
Analysis 17
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1 Output object(s)
Calonectria - ITS ML Tree
Analysis 18
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1 Input object(s)
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Fusarium lateritium - ITS ML Tree
Analysis 19
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Fusarium liseola - ITS ML Tree
Analysis 20
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1 Input object(s)
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1 Output object(s)
Fusarium concolor - ITS ML Tree
Analysis 21
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1 Output object(s)
Acidobacteriaceae / Acidobacteria 16S ML Tree
Analysis 22
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Bacillales excluding Paenibacillaceae / Firmicutes 16S ML Tree
Analysis 23
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Burkholderiaceae / Betaproteobacteria 16S ML Tree
Analysis 24
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tree 1
Analysis 25
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1 Output object(s)
Chromatiales - 16S ML Tree
Analysis 26
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Comamonadaceae / Betaproteobacteria 16S ML Tree
Analysis 27
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Enterobacteriaceae / Gammaproteobacteria 16S ML Tree
Analysis 28
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1 Output object(s)
Lactobacillales / Firmicutes 16S ML Tree
Analysis 29
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Microchaetaceae + Rivulariaceae / Cyanobacteria 16S ML Tree
Analysis 30
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Micrococcales Streptomycetales Actinobacteria 16S MLT
Analysis 31
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Micromonosporales / Actinobacteria 16S ML Tree
Analysis 32
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1 Output object(s)
Negativicutes + Clostridia / Firmicutes 16S ML Tree
Analysis 33
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1 Output object(s)
Nocardiaceae / Actinobacteria 16S ML Tree
Analysis 34
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1 Input object(s)
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1 Output object(s)
Oxalobacteriaceae / Betaproteobacteria 16S ML Tree
Analysis 35
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1 Input object(s)
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1 Output object(s)
Paenibacillaceae / Firmicutes 16S ML Tree
Analysis 36
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1 Input object(s)
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1 Output object(s)
Pasteurellaceae / Gammaproteobacteria
Analysis 37
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1 Input object(s)
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1 Output object(s)
Pseudomonadales / Gammaproteobacteria 16S ML Tree
Analysis 38
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1 Input object(s)
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1 Output object(s)
Rhizobiales / Alphaproteobacteria 16S ML Tree
Analysis 39
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1 Input object(s)
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1 Output object(s)
Rhodospirillaceae - 16S ML Tree
Analysis 40
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1 Input object(s)
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1 Output object(s)
Sphingomonadaceae / Alphaproteobacteria 16S ML Tree
Analysis 41
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1 Input object(s)
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1 Output object(s)
Xanthomonadaceae / Gammaproteobacteria 16S ML Tree
Analysis 42
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1 Input object(s)
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1 Output object(s)
Chitinophagales + Cytophagales / Bacteroidetes 16S ML Tree
Citation title: "Evolutionary relationships among the "spiny solanums" (Solanum subgenus Leptostemonum)".
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