@ARTICLE{TreeBASE2Ref18741,
author = {Chodon Sass and Chelsea D. Specht},
title = {Phylogenetic estimation of the core Bromelioids with an emphasis on the genus Aechmea (Brome- liaceae).},
year = {2010},
keywords = {Aechmea; Bromeliaceae; Bromelioideae; ETS; g3pdh; Molecular phylogeny; Neotropical biogeography; rpb2},
doi = {10.1016/j.ympev.2010.01.005},
url = {},
pmid = {20064621},
journal = {Molecular Phylogenetics and Evolution},
volume = {},
number = {},
pages = {},
abstract = {We developed a phylogeny of the core Bromelioideae including Aechmea and related genera, with the specific goals of investigating the monophyly of Aechmea and its allied genera, redefining monophyletic lineages for taxonomic revision, and investigating the biogeographic history of the group. Chloroplast, nuclear ribosomal, and low copy nuclear DNA sequences from 150 species within the Bromelioideae were used to develop the phylogeny. Phylogenies constructed with the combined four gene dataset provided sufficient resolution for investigating evolutionary relationships among species. Many genera are nested within Aechmea, or are rendered para- or polyphyletic by inclusion of Aechmea species. Several genera and subgenera of Aechmea with species in disjunct geographic locations are found to be polyphyletic, divided into separate clades that reflect geographic distribution rather than morphological similarity. This suggests that certain morphological characteristics thought to be indicative of common ancestry have instead evolved multiple times in parallel (i.e. ecological conservatism), possibly indicative of local adaptations to an epiphytic habit across the range of the Bromelioideae. These apparently homoplastic morphological characters used to assign species to genera or subgenera may be useful taxonomically when geography is also taken into account. }
}
Matrices for Study 10251

Citation title:
"Phylogenetic estimation of the core Bromelioids with an emphasis on the genus Aechmea (Brome- liaceae).".

This study was previously identified under the legacy study ID S2608
(Status: Published).
Matrices
| ID |
Matrix Title |
Description |
Data type |
NTAX |
NCHAR |
Taxa |
|
|
|
|
|
M3148
|
18S NJ |
Legacy TreeBASE Matrix ID = M3794 |
Nucleic Acid |
24 |
2283 |
View Taxa
|
|
|
|
|
|
M3145
|
18S ML unique haplotypes |
Legacy TreeBASE Matrix ID = M3791 |
Nucleic Acid |
24 |
2283 |
View Taxa
|
|
|
|
|
|
M3154
|
COI NJ |
Legacy TreeBASE Matrix ID = M3800 |
Nucleic Acid |
170 |
879 |
View Taxa
|
|
|
|
|
|
M3151
|
COI ML unique haplotypes |
Legacy TreeBASE Matrix ID = M3797 |
Nucleic Acid |
56 |
879 |
View Taxa
|
|
|
|
|
|
M3153
|
cytb NJ |
Legacy TreeBASE Matrix ID = M3799 |
Nucleic Acid |
98 |
707 |
View Taxa
|
|
|
|
|
|
M3150
|
cytb ML unique haplotypes |
Legacy TreeBASE Matrix ID = M3796 |
Nucleic Acid |
33 |
707 |
View Taxa
|
|
|
|
|
|
M3143
|
RP2 ML unique haplotypes |
Legacy TreeBASE Matrix ID = M3789 |
Nucleic Acid |
27 |
602 |
View Taxa
|
|
|
|
|
|
M3146
|
RP2 NJ |
Legacy TreeBASE Matrix ID = M3792 |
Nucleic Acid |
54 |
602 |
View Taxa
|
|
|
|
|
|
M3149
|
ND4 ML unique haplotypes |
Legacy TreeBASE Matrix ID = M3795 |
Nucleic Acid |
13 |
579 |
View Taxa
|
|
|
|
|
|
M3152
|
ND4 NJ |
Legacy TreeBASE Matrix ID = M3798 |
Nucleic Acid |
41 |
579 |
View Taxa
|
|
|
|
|
|
M3147
|
EF1 NJ |
Legacy TreeBASE Matrix ID = M3793 |
Nucleic Acid |
41 |
536 |
View Taxa
|
|
|
|
|
|
M3144
|
EF1 ML unique haplotypes |
Legacy TreeBASE Matrix ID = M3790 |
Nucleic Acid |
11 |
536 |
View Taxa
|
|
|
|
|