@ARTICLE{TreeBASE2Ref26027,
author = {Christine Cargill and Will E Neal and Ish Sharma and Cecile Gueidan},
title = {A preliminary molecular phylogeny of the genus Riccia L. (Ricciaceae) in Australia},
year = {2016},
keywords = {Riccia; liverworts; molecular phylogeny; Australia; Northern Territory},
doi = {10.1071/SB16018},
url = {http://},
pmid = {},
journal = {Australian Systematic Botany},
volume = {29},
number = {},
pages = {197--217},
abstract = {Several Australian Riccia taxa have been sequenced for the first time, with the majority from the monsoon tropics of the Northern Territory, north of 18 latitude. This allowed testing of several infrageneric groupings within the genus as well as morphological species concepts. Molecular data from one nuclear and four plastid markers support the genus as a monophyletic group. However, the monophyly of the two largest subgenera, subgenus Riccia and subgenus Ricciella, are not supported, with the latter being polyphyletic and well nested within subgenus Riccia. Several currently accepted species such as Riccia inflexa and Riccia lamellosa were also found to be polyphyletic. A second tree reconstruction using only trnL?F sequences allowed comparison to several taxa collected outside of Australia. This showed that some species have a truly cosmopolitan distribution, whereas others have not.}
}
Matrices for Study 19476

Citation title:
"A preliminary molecular phylogeny of the genus Riccia L. (Ricciaceae) in Australia".

Study name:
"A preliminary molecular phylogeny of the genus Riccia L. (Ricciaceae) in Australia".

This study is part of submission 19476
(Status: Published).
Matrices
ID |
Matrix Title |
Description |
Data type |
NTAX |
NCHAR |
Taxa |
|
|
|
|
M57816
|
Fig. 5 Neofusicoccum ITS TEF1 TUB2 RPB2 alignment |
|
Nucleic Acid |
208 |
1840 |
View Taxa
|
|
|
|
|
M57817
|
Fig. 6 Neofusicoccum parvum ITS TEF1 TUB2 RPB2 alignment |
|
Nucleic Acid |
75 |
1805 |
View Taxa
|
|
|
|
|
M57819
|
Fig. 8 Phaeobotryon ITS LSU TEF1 alignment |
|
Nucleic Acid |
54 |
1726 |
View Taxa
|
|
|
|
|
M57815
|
Fig. 4 Lasiodiplodia ITS TEF1 TUB2 RPB2 alignment |
|
Nucleic Acid |
148 |
1612 |
View Taxa
|
|
|
|
|
M57821
|
Fig. 10 Saccharata ITS TEF1 RPB2 alignment |
|
Nucleic Acid |
41 |
1529 |
View Taxa
|
|
|
|
|
M57813
|
Fig. 2. Diplodia ITS TEF1 TUB2 alignment |
|
Nucleic Acid |
180 |
1291 |
View Taxa
|
|
|
|
|
M57814
|
Fig. 3 Dothiorella ITS TEF1 TUB2 alignment |
|
Nucleic Acid |
123 |
1272 |
View Taxa
|
|
|
|
|
M57820
|
Fig. 9 Pseudofusicoccum TEF1 TUB2 ITS alignment |
|
Nucleic Acid |
30 |
1256 |
View Taxa
|
|
|
|
|
M57812
|
Fig. 1. Botryosphaeria ITS TEF1 TUB2 alignment |
|
Nucleic Acid |
51 |
1206 |
View Taxa
|
|
|
|
|
M57818
|
Fig. 7 Neoscytalidium ITS TEF1 TUB2 alignment |
|
Nucleic Acid |
66 |
1133 |
View Taxa
|
|
|
|
|
M57893
|
Fig. S10B Saccharata RPB2 alignment |
|
Nucleic Acid |
32 |
627 |
View Taxa
|
|
|
|
|
M57887
|
Fig. S8B Phaeobotryon LSU alignment |
|
Nucleic Acid |
44 |
556 |
View Taxa
|
|
|
|
|
M57892
|
Fig. S10A Saccharata ITS alignment |
|
Nucleic Acid |
41 |
550 |
View Taxa
|
|
|
|
|
M57874
|
Fig. S5B Neofusicoccum RPB2 alignment |
|
Nucleic Acid |
176 |
539 |
View Taxa
|
|
|
|
|
M57879
|
Fig. S6B Neofusicoccum parvum complex RPB2 alignment |
|
Nucleic Acid |
61 |
535 |
View Taxa
|
|
|
|
|
M57825
|
Fig. S2A Diplodia ITS alignment |
|
Nucleic Acid |
179 |
522 |
View Taxa
|
|
|
|
|
M57868
|
Fig. S4B Lasiodiplodia RPB2 alignment |
|
Nucleic Acid |
112 |
520 |
View Taxa
|
|
|
|
|
M57872
|
Fig. S5A Neofusicoccum ITS alignment |
|
Nucleic Acid |
208 |
510 |
View Taxa
|
|
|
|
|
M57886
|
Fig. S8A Phaeobotryon ITS alignment |
|
Nucleic Acid |
54 |
500 |
View Taxa
|
|
|
|
|
M57883
|
Fig. S7A Neoscytalidium ITS alignment |
|
Nucleic Acid |
66 |
499 |
View Taxa
|
|
|
|
|
M57889
|
Fig. S9A Pseudofusicoccum ITS alignment |
|
Nucleic Acid |
30 |
493 |
View Taxa
|
|
|
|
|
M57877
|
Fig. S6A Neofusicoccum parvum complex ITS alignment |
|
Nucleic Acid |
75 |
481 |
View Taxa
|
|
|
|
|
M57863
|
Fig. S3A Dothiorella ITS alignment |
|
Nucleic Acid |
123 |
479 |
View Taxa
|
|
|
|
|
M57822
|
Fig. S1A Botryosphaeria ITS alignment |
|
Nucleic Acid |
51 |
461 |
View Taxa
|
|
|
|
|
M57891
|
Fig. S9C Pseudofusicoccum TUB2 alignment |
|
Nucleic Acid |
23 |
427 |
View Taxa
|
|
|
|
|
M57865
|
Fig. S3C Dothiorella TUB2 alignment |
|
Nucleic Acid |
109 |
415 |
View Taxa
|
|
|
|
|
M57871
|
Fig. S4D Lasiodiplodia TUB2 alignment |
|
Nucleic Acid |
130 |
402 |
View Taxa
|
|
|
|
|
M57881
|
Fig. S6D Neofusicoccum parvum complex TUB2 alignment |
|
Nucleic Acid |
72 |
394 |
View Taxa
|
|
|
|
|
M57862
|
Fig. S2C Diplodia TUB2 alignment |
|
Nucleic Acid |
167 |
389 |
View Taxa
|
|
|
|
|
M57824
|
Fig. S1C Botryosphaeria TUB2 alignment |
|
Nucleic Acid |
44 |
387 |
View Taxa
|
|
|
|
|
M57876
|
Fig. S5D Neofusicoccum TUB2 alignment |
|
Nucleic Acid |
203 |
381 |
View Taxa
|
|
|
|
|
M57866
|
Fig. S4A Lasiodiplodia ITS alignment |
|
Nucleic Acid |
147 |
368 |
View Taxa
|
|
|
|
|
M57885
|
Fig. S7C Neoscytalidium TUB2 alignment |
|
Nucleic Acid |
65 |
358 |
View Taxa
|
|
|
|
|
M57888
|
Fig. S8C Phaeobotryon TEF1 alignment |
|
Nucleic Acid |
45 |
339 |
View Taxa
|
|
|
|
|
M57896
|
Fig. S10C Saccharata TEF1 alignment |
|
Nucleic Acid |
39 |
302 |
View Taxa
|
|
|
|
|
M57890
|
Fig. S9B Pseudofusicoccum TEF1 alignment |
|
Nucleic Acid |
30 |
295 |
View Taxa
|
|
|
|
|
M57880
|
Fig. S6C Neofusicoccum parvum complex TEF1 alignment |
|
Nucleic Acid |
71 |
281 |
View Taxa
|
|
|
|
|
M57826
|
Fig. S2B Diplodia TEF1 alignment |
|
Nucleic Acid |
174 |
276 |
View Taxa
|
|
|
|
|
M57875
|
Fig. S5C Neofusicoccum TEF1 alignment |
|
Nucleic Acid |
200 |
275 |
View Taxa
|
|
|
|
|
M57864
|
Fig. S3B Dothiorella TEF1 alignment |
|
Nucleic Acid |
121 |
269 |
View Taxa
|
|
|
|
|
M57823
|
Fig. S1B Botryosphaeria TEF1 alignment |
|
Nucleic Acid |
50 |
263 |
View Taxa
|
|
|
|
|
M57869
|
Fig. S4C Lasiodiplodia TEF1 alignment |
|
Nucleic Acid |
146 |
258 |
View Taxa
|
|
|
|
|
M57884
|
Fig. S7B Neoscytalidium TEF1 alignment |
|
Nucleic Acid |
65 |
187 |
View Taxa
|
|
|
|
|