@ARTICLE{TreeBASE2Ref18487,
author = {V. Karaman-Castro and Lowell E. Urbatsch},
title = {Phylogeny of Hinterhubera Group and Related Genera (Hinterhuberinae: Astereae) Based on the nrDNA ITS and ETS Sequences},
year = {2008},
keywords = {},
doi = {10.1600/036364409790139772},
url = {},
pmid = {},
journal = {Systematic Botany},
volume = {34},
number = {4},
pages = {805--817},
abstract = {The phylogenetic relationships of six out of seven genera from the informal Hinterhubera group (Hinterhuberinae) and nine other subtribes in tribe Astereae primarily with Southern Hemisphere distributions were studied using internal and external transcribed spacer region nuclear DNA (ITS and ETS) sequence data. Bayesian and parsimony analyses were conducted on both datasets independently and combined. Topologies resulting from the ITS and combined data sets were highly congruent, while the ETS based phylogenies were poorly resolved probably due to there being fewer and a lower level of informative characters. The monophyly of the Hinterhubera group was not confirmed, as well as the monophyly of the subtribes Podocominae, Baccharidinae, Lagenophorinae, Grangeinae, and Asterinae as had been delimited by Nesom and Robinson. Instead, our results suggest a closer relationship among the taxa from similar geographic areas rather than according to their current subtribal classification. Within the Hinterhubera group, the monophyly of the genera has been confirmed. Westoniella was sister to Laennecia (Podocominae), while Hinterhubera appeared sister to Laestadia and Blakiella. The radiate Diplostephium and Guynesomia were disparately placed in the Southern Hemisphere clade and not related to the other radiate genera of Hinterhuberinae. Present analyses suggest that dioecy in Aztecaster and Baccharidinae evolved independently as hypothesized by Nesom. Archibaccharis (Baccharidinae) was sister to Plagiocheilus (Grangeinae). The analyses of ITS and ETS data, and Bayesian analysis of the combined dataset, resolved Baccharidinae nonmonophyletic. Constraint analyses forcing a monophyletic Baccharidinae, with Plagiocheilus sister to Archibaccharis, did not reject monophyly of the subtribe.}
}
Matrix 16036 of Study 9996

Citation title:
"Phylogeny of Hinterhubera Group and Related Genera (Hinterhuberinae: Astereae) Based on the nrDNA ITS and ETS Sequences".

This study was previously identified under the legacy study ID S2332
(Status: Published).
Matrices
Title: Syngnathus sequences - pipefishes
Description: cytochrome b, 12SrRNA & 16SrRNA
Download all Row Segment Metadata
Rows
Taxon Label |
Row Segments |
Characters 1?–30 |
Syngnathus abaster S23 |
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??????????TACGAAAAACCCACCCCGTT |
Syngnathus abaster SCA1 |
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??????AATTTACGAAAAACCCACCCCGTT |
Syngnathus acus S2 |
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ATGGCCAACCTACGAAAAACCCACCCCATC |
Syngnathus acus KLU83 |
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?????CAACCTACGAAAAACCCACCCCATC |
Syngnathus acus BB5 |
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?????????????????????????????? |
Syngnathus acus TH3 |
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?????????????????????????????? |
Syngnathus rostellatus S3 |
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GTGGCCAATTTACGAAAAACCCACCCCATC |
Syngnathus rostellatus KLU96 |
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???????ATTTACGAAAAACCCAACCCATC |
Syngnathus taenionotus S24 |
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ATGACCAATTTACGAAAAACTCACCCCGTT |
Syngnathus taenionotus VEN89 |
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????????TTTACGAAAAACTCACCCCGTT |
Syngnathus temminckii KB1 |
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?????????????????????????????? |
Syngnathus temminckii KO4 |
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?????????????????????????????? |
Syngnathus tenuirostris LIV8 |
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?????????????????????????????? |
Syngnathus typhle KLU1 |
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??????AATTTACGAAAAACTCACCCCGTT |
Syngnathus typhle S4 |
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ATGACCAATTTACGAAAAACTCACCCCGTT |
Syngnathus typhle S22 |
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??????????????????ACTCACCCCGTT |
Syngnathus watermeyeri T658 |
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?????????????????????????????? |
Syngnathus watermeyeri T659 |
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?????????????????????????????? |
Syngnathus exilis S64 |
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ATGGCCAACATACGAAAAACTCACCCTATC |
Syngnathus floridae S21 |
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???????????????AAAACCCATCCCATC |
Syngnathus floridae S41 |
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ATGGCTCGCCTACGAAAAACCCATCCCATC |
Syngnathus fuscus S19 |
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|
??GTTACCCCTACGAAAAACCCACCCCCTT |
Syngnathus leptorhynchus S33 |
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|
ATGGCCAACATACGAAAAACTCACCCTATC |
Syngnathus louisianae S42 |
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|
GTGGCCAACCTACGGAAAACCCATCCCATC |
Syngnathus pelagicus S111 |
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|
?????CAACCTACGGAAAACCCGCCCCATC |
Syngnathus pelagicus S112 |
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|
???????????????????????????ATC |
Syngnathus schlegeli S14 |
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|
ATGGCCAACCTCCGAAAAACCCACCCAATT |
Syngnathus schlegeli S95 |
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GTGGCCAACCTCCGAAAAACCCACCCAATT |
Syngnathus schlegeli S96 |
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ATGGCCAACCTCCGAAAAACCCACCCAATT |
Syngnathus scovelli S40 |
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ATGGCTCGCCTACGAAAAACCCACCCACTT |
Columns
None of the columns has a description.