@ARTICLE{TreeBASE2Ref20204,
author = {Nicholas A Milani and Daniel Paul Lawrence and A. Elizabeth Arnold and Hans VanEtten},
title = {Inheritance of Pisatin Demethylase (PDA) among the Fusaria and closely related taxa},
year = {2011},
keywords = {horizontal gene transfer, PDA, Fusarium},
doi = {},
url = {http://},
pmid = {},
journal = {Fungal Genetics and Biology},
volume = {},
number = {},
pages = {},
abstract = {Host specificity of plant pathogens is dictated by the presence of genes that enable the pathogen to circumvent host defenses. Upon recognition of the pathogen, plants initiate defense responses that can include the production of antimicrobial compounds such as phytoalexins. Nectria haematococca mating population VI (MPVI) is a filamentous ascomycete that contains a cluster of genes known as the pea pathogenicity (PEP) cluster in which the pisatin demethylase (PDA) gene resides. The PDA gene product is responsible for the detoxification of the phytoalexin pisatin, which is produced by the pea plant (Pisum sativum). Thus, PDA allows the fungus to colonize the host and become pathogenic. It has been proposed that the evolutionary origin of PDA and the PEP cluster is explained by a horizontal gene transfer (HGT) event. The observations supporting this hypothesis include the location of the PEP cluster which resides on a conditionally dispensable (CD) chromosome, the phylogenetically discontinuous distribution of the cluster among closely related species, and bias in GC content and codon usage as compared to other regions of the genome. The phylogenetic analyses presented here coupled with previous work provides robust support for the hypothesis of HGT of PDA and perhaps the entire PEP cluster or the whole CD chromosome between closely related fungi. }
}
Matrix 11598 of Study 12103
Citation title:
"Inheritance of Pisatin Demethylase (PDA) among the Fusaria and closely related taxa".
Study name:
"Inheritance of Pisatin Demethylase (PDA) among the Fusaria and closely related taxa".
This study is part of submission 12103
(Status: Published).
Matrices
Title: Fusarium PDA
Rows
Taxon Label |
Row Segments |
Characters 1?–30 |
Fusarium oxysporum f.sp. dianthi |
(none)
|
CCCATTGTTCGTATAGGGCCAAATCGATAC |
Fusarium oxysporum f. sp. glycines |
(none)
|
CCCATTGTTCGTATAGGGCCAAATCGATAC |
Fusarium oxysporum f.sp. lini |
(none)
|
CCCATTGTTCGTATAGGGCCCAATCGATAC |
Fusarium oxysporum f. sp. phaseoli |
(none)
|
CCCATTGTTCGTATAGGGCCGAATCGATAC |
Fusarium oxysporum f.sp. pisi DB |
(none)
|
CCCATTGTTCGTATAGGGCCGAATCGATAC |
Fusarium oxysporum f.sp. pisi F105 |
(none)
|
CCCATTGTTCGTATAGGGCCGAATCGATAC |
Fusarium oxysporum f.sp. pisi F184 |
(none)
|
GCCATCGTTCGTATAGGGCCGAATCGATAC |
Fusarium oxysporum f.sp. pisi F202 |
(none)
|
CCCATTGTTCGTATAGGGCCGAATCGATAC |
Fusarium oxysporum f.sp. pisi F28 |
(none)
|
CCCATTGTTCGTATAGGGCCGAATCGATAC |
Fusarium oxysporum f.sp. pisi F40 |
(none)
|
CCCATTGTTCGTATAGGGCCGAATCGATAC |
Fusarium oxysporum f.sp. pisi T247 |
(none)
|
CCCATTGTTTATATAGGGCCGAATCGATAC |
Nectria haematococca 156306 |
(none)
|
CCCATTGTTCGCATAGGGCCGAACCGGTAC |
Nectria haematococca 196107 |
(none)
|
GCCATCGTTCGAATAGGGCCGAGGCGGTAC |
Nectria haematococca 24111 |
(none)
|
CCCATTGTTTGCATAGGGCCGAACCGGTAC |
Nectria haematococca 5551 |
(none)
|
CCCATTGTTCGCATAGGGCCGAATCGATAC |
Nectria haematococca 6222 |
(none)
|
GCCATTGTTCGTATAGGGCCGAATCGATAC |
Nectria haematococca 9617 |
(none)
|
GCCATTGTTCGAATAGGGCCGAATCGATAC |
Nectria haematococca DB |
(none)
|
GCCATCGTTCGAATAGGACCGAGGCGGTAC |
Neocosmospora boninensis |
(none)
|
GCCATCGTTAGAATAGGACCGAGGCGATAC |
Neocosmospora tenuicristata 22155 |
(none)
|
CCCATTGTTTGCATAGGACCGAATCGATAC |
Neocosmospora vasinfecta 22425 |
(none)
|
GCCATCGTTCGTATAGGGCCGAGACGGTAC |
Neocosmospora vasinfecta 22527 |
(none)
|
GCCATTGTTCGTATAGGGCCGAACCGGTAC |
Neocosmospora vasinfecta ATCC |
(none)
|
GCCATCGTTCGAATAGGGCCGAGGCGGTAC |
Columns
None of the columns has a description.