@ARTICLE{TreeBASE2Ref18562,
author = {J. K. Triplett and L. G. Clark},
title = {Phylogeny of the temperate bamboos (Poaceae: Bambusoideae: Bambuseae) with an emphasis on Arundinaria and allies.},
year = {2010},
keywords = {},
doi = {10.1600/036364410790862678},
url = {},
pmid = {},
journal = {Systematic Botany},
volume = {35},
number = {1},
pages = {102--120},
abstract = {The temperate bamboos are a morphologically diverse grass lineage with a complex and problematic taxonomy. We present the first robust multi-locus chloroplast phylogeny of the temperate bamboos, assess relationships among key genera with an emphasis on Arundinaria and its allies, and highlight the potential role of hybridization and reticulate evolution in this group. Utilizing a total of twelve plastid DNA regions (1 gene, 10 intergenic spacers, and 1 intron), the temperate clade was resolved to include six major lineages: Bergbamboes, the African alpine bamboos, Chimonocalamus, the Shibataea clade, the Phyllostachys clade, and the Arundinaria clade. Internal resolution varied among these six, in part reflecting sampling density and in part due to apparent evolutionary rate heterogeneity. The recovered phylogeny is largely incongruent with morphological classifications, rendering subtribes and many genera paraphyletic or polyphyletic. Some associations are consistent with existing hypotheses of intergeneric hybridization, while others may indicate convergent evolution, lineage sorting, or previously unsuspected cases of hybridization. Several robust lineages were identified within the Arundinaria clade, including the Medake subclade (Pleioblastus sensu stricto and allies), Sasa sensu stricto, Sasamorpha, and the Sinicae subclade (comprising a subset of Chinese taxa currently classified in Acidosasa, Indosasa, Pleioblastus sect. Amari, and Pseudosasa subg. Sinicae). Our analyses also recovered a monophyletic Arundinaria sensu stricto of North America, and revealed substantial divergence between A. gigantea and A. tecta.}
}
Matrix 4183 of Study 10071
Citation title:
"Phylogeny of the temperate bamboos (Poaceae: Bambusoideae: Bambuseae) with an emphasis on Arundinaria and allies.".
This study was previously identified under the legacy study ID S2411
(Status: Published).
Matrices
Title: 12 region cpDNA (MP)
Description: Legacy TreeBASE Matrix ID = M4566
Rows
Taxon Label |
Row Segments |
Characters 1?–30 |
Oryza sativa |
(none)
|
ATTTTTGCAACGTTAGCCGCAGCCTATATA |
Brachyelytrum erectum |
(none)
|
ATTTTTGCA-CATTAGCCGCAGCCTATATA |
Streptogyna americana |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Bambusa vulgaris |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Guadua angustifolia |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Neurolepis elata |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Buergersiochloa bambusoides |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Pariana radiciflora |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Sucrea maculata |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Chimonocalamus pallens |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Thamnocalamus tessellatus |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Yushania alpina |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Shibataea kumasaca |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Ferrocalamus strictus |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Chimonobambusa marmorea |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Thamnocalamus spathiflorus |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Phyllostachys aurea |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Arundinaria gigantea |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Arundinaria tecta |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Sasamorpha borealis Albostriata |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Sasa veitchii |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Acidosasa purpurea |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Indosasa sinica |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Pleioblastus maculatus |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Pseudosasa amabilis |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Pseudosasa japonica |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Pleioblastus linearis |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Pleioblastus argenteostriatus |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Pleioblastus simonii |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Semiarundinaria fastuosa |
(none)
|
ATTTTTGCA-CGTTAGCCGCAGCCTATATA |
Columns
None of the columns has a description.