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Matrix 58039 of Study 21219
Citation title: "Characterization of molecular diversity and genome-wide mapping of loci associated with resistance to stripe rust and stem rust in Ethiopian bread wheat accessions".
Study name: "Characterization of molecular diversity and genome-wide mapping of loci associated with resistance to stripe rust and stem rust in Ethiopian bread wheat accessions".
This study is part of submission 21219
(Status: Published).
Matrices
Title: Fomitiporella - ITS alignment
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Fomitiporella caryophylli KJ654543_4_LS_2_C_76_W_A | (none) | ACGAG--TTTTGAAAGC---GGAGGCT--T |
| Fomitiporella sinica LC333791_11_A | (none) | ACGAG--TTTTGAAAGC---GGAGGCT--T |
| Fomitiporella sinica LC102210_AP361 | (none) | ------------------------------ |
| Fomitiporella sinica KX181298_Cui_10139 | (none) | ACGAG--TTTTG-AAGC---GGAGGCT--T |
| Fomitiporella sinica KX181302_LWZ_20140624_5 | (none) | ACGAG--TTTTGAAAGC---GGAGGCT--T |
| Fomitiporella sinica KX181301_LWZ_20140625_2 | (none) | ACGAG--TTTTG-AAGC---GGAGGCT--T |
| Fomitiporella sinica LC333792_PP85 | (none) | ACGAG--TTTTGAAAGC---GGAGGCT--T |
| Fomitiporella sinica KJ787820_LWZ_20130809_8 | (none) | ------------------------------ |
| Fomitiporella sinica KX181300_Dai_10461 | (none) | ACGAG--TTTTGAAAGC---GGAGGCT--T |
| Fomitiporella sinica KJ769184_KS_F6 | (none) | ACGAG--TTTTGAAAGC---GGAGGCT--T |
| Fomitiporella caryophylli AY558611_CBS_448.76 | (none) | {AT}CGAG--TTTTGAAAGC---?GA{CG} |
| Fomitiporella umbrinella KF638515_Achao_50 | (none) | TAGGG--GGTTGAAGCG---GGAGGCC--T |
| Fomitiporella umbrinella KP347536_CIEFAPcc88 | (none) | ACGAG--TTTTGAAAGC---GGAGGCC--T |
| Fomitiporella umbrinella KP347537_CIEFAPcc107 | (none) | ACGAG--TTTTGAAAGC---GGAGGCC--T |
| Fomitiporella umbrinella KX181292_JV_0212.8J | (none) | ACGAG--TTTTGAAAGC---GGAGGCC--T |
| Fomitiporella umbrinella KX181291_JV_0312.26.6J | (none) | ACGAG--TTTTGAAAGC---GGAGGCC--T |
| Fomitiporella umbrinella KX181293_JV_0904.149J | (none) | ACGAG--TTTTGAAAGC---GGAGGCC--T |
| Hymenochaetaceae sp. LC327030 M2195 | (none) | ------------------------------ |
| Fomitiporella sp. 2 LM 2012 JQ038893 STEU 7147 | (none) | ------------------------------ |
| Fomitiporella sp. 2 LM 2012 JQ038894 STEU 7154 | (none) | ------------------------------ |
| Fomitiporella sp. MC 2015b KP279297 2 STE U7155 | (none) | ------------------------------ |
| Fomitiporella vietnamensis MG657332_Dai_18377 | (none) | ACGAG--TTCTGAAAGC---GGAGGCT--T |
| Fomitiporella vietnamensis MG657333_Dai_18382 | (none) | ACGAG--TTCTGAAAGC---GGAGGCT--T |
| Fomitiporella sp. CSN944 ITS4 CS30 | (none) | GCGAG--TTTTGAAAGC---GGAGGCC--T |
| Fomitiporella sp. 1 LM 2012 JQ038891 STEU 7038 | (none) | ------------------------------ |
| Fomitiporella sp. MC 2015a KP279298 STE U7799 | (none) | ------------------------------ |
| Fomitiporella sp. 1 LM 2012 JQ038892 STEU 7039 | (none) | ------------------------------ |
| Fomitiporella sp. MC 2015a KP279299 STE U7798 | (none) | ------------------------------ |
| Fomitiporella sp. MC 2015a KP279295 2 STE U7141 | (none) | ------------------------------ |
| Fomitiporella sp. MC 2015a KP279296 2 STE U7148 | (none) | ------------------------------ |
| Fomitiporella sp. CSN1936 ITS4 CS30 | (none) | GCGAG--TCTTGAAAGC---GGAGGCC--T |
| Fomitiporella sp. PMM2086 ITS1 | (none) | ------------------------------ |
| Fomitiporella coruscans KX181296_JV_0409.6J | (none) | ACGAG--TCTTGAAAGC---AGAGGCC--T |
| Fomitiporella coruscans KX181297_JV_1207.6.1J | (none) | ------------------------------ |
| Fomitiporella coruscans KX181294_JV_1312.E2J | (none) | ACGAG--TCTTGAAAGC---AGAGGCC--T |
| Fomitiporella coruscans KX181295_JV_1407.46 | (none) | ACGAG--TCTTGAAAGC---AGAGGCC--T |
| Fomitiporella sp. 0509.114 KX181314 0509.114 | (none) | ACGAG--TTTTGAAAGC---GGGAGCT--T |
| Fomitiporella sp. Oe5 JF895466 Oe5 | (none) | ACGAG--TTTTGAAAGC---GGGAGCT--T |
| Fomitiporella sp. Oe7 JF895468 Oe7 | (none) | ACGAG--TTTTGAAAGC---GGGAGCT--T |
| Fomitiporella sp. Oe6 JF895467 Oe6 | (none) | ACGAG--TTTTGAAAGC---GGGAGCT--T |
| Fomitiporella sp. 4 LM 2012 JQ038897 STEU 7042 | (none) | ------------------------------ |
| Fomitiporella sp. 4 LM 2012 JQ038898 STEU 7043 | (none) | ------------------------------ |
| Fomitiporella sp. AM 04 KX181318 AM 04 | (none) | ACGAG--TTTTGAAAGC---GGGAGCT--T |
| Fomitiporella chinensis KX181310_Cui_11097 | (none) | ACGAG--TCTTGTACGC---AAGAGCT--T |
| Fomitiporella chinensis KJ787818_LWZ_20130916_3 | (none) | ACGAG--TCTTGTACGC---AAGAGCT--T |
| Fomitiporella chinensis KJ787817_LWZ_20130713_7 | (none) | ACGAG--TCTTGTACGC---AAGAGCT--T |
| Fomitiporella subinermis KX181308_Dai_15114 | (none) | ACGAG--TTTTGAAGGC---GAGAGTT--T |
| Fomitiporella subinermis KX181307_Dai_15131 | (none) | ACGAG--TTTTGAAGGC---GAGAGTT--T |
| Fomitiporella inermis KX181305_JV_0509.57K | (none) | ACGAG--TTTTGAAAGC---GGGAGTT--T |
| Fomitiporella inermis KX181306_JV_1009.56 | (none) | ACGAG--TTTTGAAAGC---GGGAGTT--T |
| Fomitiporella inermis KX181304_JV_1109.19A | (none) | ACGAG--TTTTGAAAGC---GGGAGTT--T |
| Rajchenbergia tenuissima KC456242_Dai_12245 | (none) | ACGAG---TCTG-AACC---GGGAGCC--T |
| Rajchenbergia tenuissima KC456243_Dai_12255 | (none) | ACGAG---TCTG-AACC---GGGAGCC--T |
| Rajchenbergia tenuissima KC456244_Dai_12365 | (none) | ACGAG---TCTGAAACC---GGGAGCC--T |
| Rajchenbergia pertenuis MG806101_PPT111 | (none) | ACGAG---TTTGAAACC---GGGAGTC--T |
| Phylloporia resupinata KJ787822_DMC_476 | (none) | ACGAG--TTTTGAAAGC---GGGAGCT--T |
| Rajchenbergia mangrovei KX181313_JV_1008.60 | (none) | ACGAG---TTTGAAACC---GGGAGCC--T |
| Fomitiporella sp. 140721 2 KX181316 140721 2 | (none) | ACGAG--TTTTGAAAGCG-GGGGAGTT--T |
| Fomitiporella sp. 140729 22 KX181317 140729 22 | (none) | ACGAG--TTTTGAAAGCG-GGGGAGTT--T |
| Fomitiporella sp. Cui 11352 KX181315 Cui 11352 | (none) | ACGAG--TTTTGAAAGC--GGGGAGTT--T |
| Fomitiporella austroasiana MG657329_Dai_16168 | (none) | AACGA--GTTTTGAAGC--GGGAGCTT--T |
| Fomitiporella austroasiana MG657328_Dai_16244 | (none) | ACGAG--TTTTGAAAGC--GGGAGCTT--T |
| Fomitiporella austroasiana MG657330_Dai_17879 | (none) | ACGAG--TTTTGAAAGC--GGGAGCTT--T |
| Arambarria cognata AY072033_1500 | (none) | ------------------------------ |
| Arambarria cognata KP347538_MR12478 | (none) | ACGAG--TTTTGAAAGCGCGGGGAGCC--T |
| Arambarria cognata KY907681_CGP469 | (none) | ------------------------------ |
| Arambarria cognata KY907683_CGP473 | (none) | ------------------------------ |
| Fomitiporella sp. 3 LM 2012 JQ038896 STEU 7136 | (none) | ------------------------------ |
| Arambarria sp. KP279301 STE U7178 | (none) | ------------------------------ |
| Fomitiporella sp. 3 LM 2012 JQ038895 STEU 7147 | (none) | ------------------------------ |
| Arambarria sp. KP279300 STE U7109 | (none) | ------------------------------ |
| Inocutis dryophila AM269783_L_61_5_20_A | (none) | ACGAG--TTTTGAAAGC---GAGAGTCTGT |
| Inocutis dryophila AM269782_SP25 | (none) | ACGAG--TTTTGAAAGC---GAGAGTCTGT |
| Inocutis jamaicensis KY907684_RLG15819 | (none) | ------------------------------ |
| Fomitiporella sp. Cui 6557 KX181303 Cui 6557 | (none) | ACGAG--TTTTGAAGTCG-CAGAGGTT--T |
| Phellinotus piptadeniae KM211290_URM80322 | (none) | GCGAG--TCTTGAAGGC---GGAAGTT--T |
| Phellinotus piptadeniae KM211291_URM80345 | (none) | GCGAG--TCTTGAAGGC---GGAAGTT--T |
| Phellinotus neoaridus KM211294_URM80362 | (none) | AAAAAA----AAAAAAC--TTGGGGTT--- |
| Phellinus tremulae AM269804_243 | (none) | ATGAAT-TTTGAAAGGC---GAGGGCT--T |
| Phellinus alni AY340035_TW162 | (none) | ATGAA--TTTGAAAGGC---GAGGGCT--T |
| Fulvifomes nilgheriensis AY558633_CBS_209.36 | (none) | ATGAG---TTTGAAACC--GGGGAGCC--T |
| Fulvifomes fastuosus AY558615_CBS_213.36 | (none) | ATGAG---TTTGAAATC---GGGAGCC--T |
| Fulvifomes squamosus MF479267_CS456 | (none) | ------------GAATC---GGGAGTC--T |
| Fulvifomes robiniae AY558646_CBS_211.36 | (none) | ACGAA---CTTGAAATC---GGGAGTC--T |
| Tropicoporus drechsleri MG242439_CTES_570140 | (none) | TCGAG--TTTTTGAAGC----GAGGTT--T |
| Tropicoporus guanacastensis KP030793_JV_1408_25 | (none) | TCGAG--TTTTTGGAGC----GAGGCT--T |
| Phylloporia pectinata MH151181_113 | (none) | ACGAG--TTTTGAAATC----GGGGTC--T |
| Phylloporia tiliae MF410325_Cui_11306 | (none) | ACGAG--TTTTGAAAGC----GGAGTC--T |
| Phylloporia rattanicola MH151170_Dai18232 | (none) | ACAAG--TTTTGAAAGT----GGAGTC--T |
| Phylloporia nodostipitata KJ639057_FLOR_51153 | (none) | -------GTTTTGAAGC----GAGGCC--T |
| Phylloporia flabelliforma KU198356_MUCL_55569 | (none) | ATGAG--TTTTGAAGGT----GAGGCC--T |
| Phylloporia gabonensis KU198355_MUCL_55571 | (none) | ATGAG--TTTTGAAGGT----GAGGCC--T |
| Phylloporia homocarnica MH151195_Yuan5750 | (none) | ATGAG--CTTTGAAAGC----AGAGTC--T |
| Phylloporia oblongospora MH151197_Zhou179 | (none) | AAGAG--TTTTGAAGGC--ATCGGGTC--T |
| Sanghuangporus microcystideus JF895465_Oe4 | (none) | TCGAGCTTTTTGAAAGC----GAGACT--T |
| Fomitiporella sp. 5 LM 2012 JQ038899 STEU 7125 | (none) | ------------------------------ |
| Hymenochaetales sp. 5 LM 2012 JQ038900 STEU 7126 | (none) | ------------------------------ |
| Inocutis sp. MC 2015b KP279302 STE U7143 | (none) | ------------------------------ |
| Inocutis sp. MC 2015b KP279303 STE U7153 | (none) | ------------------------------ |
| Hymenochaetales sp. 6 LM 2012 JQ038901 STEU 7133 | (none) | ------------------------------ |
| Hymenochaetales sp. 6 LM 2012 JQ038902 STEU 7134 | (none) | ------------------------------ |
Columns
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